data_5HZH # _model_server_result.job_id ZmeSkx-Vk01dTpfafqifcQ _model_server_result.datetime_utc '2024-12-22 01:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5HZH # _exptl.entry_id 5HZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.62 _cell.angle_gamma 90 _cell.entry_id 5HZH _cell.length_a 36.05 _cell.length_b 74.27 _cell.length_c 58.4 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 20 A THR 17 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A OD1 ASP 155 A ASP 152 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc3 A OD2 ASP 155 A ASP 152 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc4 A OD1 ASP 215 A ASP 212 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc5 B O1G GTP . A GTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 B O3G GTP . A GTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 B O1B GTP . A GTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc8 D MG MG . A MG 403 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc9 D MG MG . A MG 403 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 183 n n PG O2G GTP sing 184 n n PG O3G GTP sing 185 n n PG O3B GTP sing 186 n n O2G HOG2 GTP sing 187 n n O3G HOG3 GTP sing 188 n n O3B PB GTP sing 189 n n PB O1B GTP doub 190 n n PB O2B GTP sing 191 n n PB O3A GTP sing 192 n n O2B HOB2 GTP sing 193 n n O3A PA GTP sing 194 n n PA O1A GTP doub 195 n n PA O2A GTP sing 196 n n PA O5' GTP sing 197 n n O2A HOA2 GTP sing 198 n n O5' C5' GTP sing 199 n n C5' C4' GTP sing 200 n n C5' H5' GTP sing 201 n n C5' "H5''" GTP sing 202 n n C4' O4' GTP sing 203 n n C4' C3' GTP sing 204 n n C4' H4' GTP sing 205 n n O4' C1' GTP sing 206 n n C3' O3' GTP sing 207 n n C3' C2' GTP sing 208 n n C3' H3' GTP sing 209 n n O3' HO3' GTP sing 210 n n C2' O2' GTP sing 211 n n C2' C1' GTP sing 212 n n C2' H2' GTP sing 213 n n O2' HO2' GTP sing 214 n n C1' N9 GTP sing 215 n n C1' H1' GTP sing 216 n n N9 C8 GTP sing 217 n y N9 C4 GTP sing 218 n y C8 N7 GTP doub 219 n y C8 H8 GTP sing 220 n n N7 C5 GTP sing 221 n y C5 C6 GTP sing 222 n n C5 C4 GTP doub 223 n y C6 O6 GTP doub 224 n n C6 N1 GTP sing 225 n n N1 C2 GTP sing 226 n n N1 HN1 GTP sing 227 n n C2 N2 GTP sing 228 n n C2 N3 GTP doub 229 n n N2 HN21 GTP sing 230 n n N2 HN22 GTP sing 231 n n N3 C4 GTP sing 232 n n # _atom_sites.entry_id 5HZH _atom_sites.fract_transf_matrix[1][1] 0.027739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002243 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 401 1722 GTP GTP . C 3 FMN A 1 402 1723 FMN FMN . D 4 MG A 1 403 1724 MG MG . E 5 CA A 1 404 1725 CA CA . F 5 CA A 1 405 1727 CA CA . G 6 HOH A 1 501 6 HOH HOH . G 6 HOH A 2 502 1 HOH HOH . G 6 HOH A 3 503 29 HOH HOH . G 6 HOH A 4 504 3 HOH HOH . G 6 HOH A 5 505 16 HOH HOH . G 6 HOH A 6 506 5 HOH HOH . G 6 HOH A 7 507 9 HOH HOH . G 6 HOH A 8 508 2 HOH HOH . G 6 HOH A 9 509 38 HOH HOH . G 6 HOH A 10 510 8 HOH HOH . G 6 HOH A 11 511 10 HOH HOH . G 6 HOH A 12 512 28 HOH HOH . G 6 HOH A 13 513 7 HOH HOH . G 6 HOH A 14 514 4 HOH HOH . G 6 HOH A 15 515 14 HOH HOH . G 6 HOH A 16 516 12 HOH HOH . G 6 HOH A 17 517 13 HOH HOH . G 6 HOH A 18 518 35 HOH HOH . G 6 HOH A 19 519 22 HOH HOH . G 6 HOH A 20 520 34 HOH HOH . G 6 HOH A 21 521 19 HOH HOH . G 6 HOH A 22 522 18 HOH HOH . G 6 HOH A 23 523 36 HOH HOH . G 6 HOH A 24 524 32 HOH HOH . G 6 HOH A 25 525 24 HOH HOH . G 6 HOH A 26 526 25 HOH HOH . G 6 HOH A 27 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 18.835 -19.454 26.888 1 49.3 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . B 2 19.588 -20.206 25.822 1 49.61 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . B 2 19.068 -20.113 28.223 1 49.89 -1 O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . B 2 19.33 -18.031 26.952 1 49.82 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . B 2 17.259 -19.48 26.527 1 65.48 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . B 2 16.724 -19.134 25.042 1 41.44 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . B 2 17.874 -18.668 24.184 1 39.56 -1 O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . B 2 15.625 -18.101 25.105 1 41.73 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . B 2 16.154 -20.503 24.425 1 31.92 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . B 2 16.388 -20.834 22.867 1 50.48 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . B 2 16.212 -19.61 21.999 1 49.57 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . B 2 17.764 -21.433 22.7 1 53.34 -1 O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . B 2 15.3 -21.971 22.538 1 44.51 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . B 2 14.385 -22.374 23.528 1 46.16 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . B 2 13.656 -23.623 23.056 1 49.5 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . B 2 12.31 -23.266 22.822 1 50.44 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . B 2 14.211 -24.127 21.734 1 51.22 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . B 2 14.953 -25.313 21.901 1 50.27 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . B 2 13.001 -24.409 20.873 1 54.37 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . B 2 12.797 -25.799 20.814 1 58.53 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . B 2 11.831 -23.748 21.582 1 51.02 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . B 2 11.334 -22.606 20.79 1 48.56 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . B 2 11.943 -21.382 20.675 1 46.86 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . B 2 11.186 -20.597 19.875 1 46.16 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . B 2 10.096 -21.297 19.484 1 45.54 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . B 2 9.013 -20.969 18.674 1 43.02 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . B 2 8.929 -19.853 18.161 1 40.89 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . B 2 8.03 -21.907 18.447 1 44.7 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . B 2 8.126 -23.159 19.022 1 45.05 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . B 2 7.175 -24.062 18.8 1 44.6 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . B 2 9.203 -23.476 19.824 1 46.66 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . B 2 10.175 -22.561 20.053 1 47.28 ? C4 GTP 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #