data_5HZH # _model_server_result.job_id PGQjA08p7BbqrgJn0qJnOQ _model_server_result.datetime_utc '2024-12-22 01:28:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5HZH # _exptl.entry_id 5HZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.62 _cell.angle_gamma 90 _cell.entry_id 5HZH _cell.length_a 36.05 _cell.length_b 74.27 _cell.length_c 58.4 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 20 A THR 17 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A OD1 ASP 155 A ASP 152 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc3 A OD2 ASP 155 A ASP 152 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc4 A OD1 ASP 215 A ASP 212 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc5 B O1G GTP . A GTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 B O3G GTP . A GTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 B O1B GTP . A GTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc8 D MG MG . A MG 403 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc9 D MG MG . A MG 403 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5HZH _atom_sites.fract_transf_matrix[1][1] 0.027739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002243 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 401 1722 GTP GTP . C 3 FMN A 1 402 1723 FMN FMN . D 4 MG A 1 403 1724 MG MG . E 5 CA A 1 404 1725 CA CA . F 5 CA A 1 405 1727 CA CA . G 6 HOH A 1 501 6 HOH HOH . G 6 HOH A 2 502 1 HOH HOH . G 6 HOH A 3 503 29 HOH HOH . G 6 HOH A 4 504 3 HOH HOH . G 6 HOH A 5 505 16 HOH HOH . G 6 HOH A 6 506 5 HOH HOH . G 6 HOH A 7 507 9 HOH HOH . G 6 HOH A 8 508 2 HOH HOH . G 6 HOH A 9 509 38 HOH HOH . G 6 HOH A 10 510 8 HOH HOH . G 6 HOH A 11 511 10 HOH HOH . G 6 HOH A 12 512 28 HOH HOH . G 6 HOH A 13 513 7 HOH HOH . G 6 HOH A 14 514 4 HOH HOH . G 6 HOH A 15 515 14 HOH HOH . G 6 HOH A 16 516 12 HOH HOH . G 6 HOH A 17 517 13 HOH HOH . G 6 HOH A 18 518 35 HOH HOH . G 6 HOH A 19 519 22 HOH HOH . G 6 HOH A 20 520 34 HOH HOH . G 6 HOH A 21 521 19 HOH HOH . G 6 HOH A 22 522 18 HOH HOH . G 6 HOH A 23 523 36 HOH HOH . G 6 HOH A 24 524 32 HOH HOH . G 6 HOH A 25 525 24 HOH HOH . G 6 HOH A 26 526 25 HOH HOH . G 6 HOH A 27 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -2.675 27.291 1.803 1 45.58 ? N1 FMN 402 A 1 HETATM 2 C C2 FMN . . . C 3 -2.808 27.811 3.074 1 47.48 ? C2 FMN 402 A 1 HETATM 3 O O2 FMN . . . C 3 -3.588 28.736 3.282 1 49.37 ? O2 FMN 402 A 1 HETATM 4 N N3 FMN . . . C 3 -2.066 27.294 4.116 1 47.81 ? N3 FMN 402 A 1 HETATM 5 C C4 FMN . . . C 3 -1.185 26.255 3.895 1 44.78 ? C4 FMN 402 A 1 HETATM 6 O O4 FMN . . . C 3 -0.523 25.795 4.821 1 40.74 ? O4 FMN 402 A 1 HETATM 7 C C4A FMN . . . C 3 -1.046 25.726 2.619 1 43.63 ? C4A FMN 402 A 1 HETATM 8 N N5 FMN . . . C 3 -0.171 24.688 2.392 1 41.85 ? N5 FMN 402 A 1 HETATM 9 C C5A FMN . . . C 3 -0.032 24.166 1.127 1 41.55 ? C5A FMN 402 A 1 HETATM 10 C C6 FMN . . . C 3 0.856 23.124 0.905 1 38.98 ? C6 FMN 402 A 1 HETATM 11 C C7 FMN . . . C 3 0.995 22.597 -0.372 1 39.64 ? C7 FMN 402 A 1 HETATM 12 C C7M FMN . . . C 3 1.956 21.47 -0.598 1 40.1 ? C7M FMN 402 A 1 HETATM 13 C C8 FMN . . . C 3 0.249 23.113 -1.428 1 41.13 ? C8 FMN 402 A 1 HETATM 14 C C8M FMN . . . C 3 0.406 22.542 -2.805 1 39.13 ? C8M FMN 402 A 1 HETATM 15 C C9 FMN . . . C 3 -0.64 24.16 -1.206 1 41.22 ? C9 FMN 402 A 1 HETATM 16 C C9A FMN . . . C 3 -0.778 24.685 0.075 1 42.98 ? C9A FMN 402 A 1 HETATM 17 N N10 FMN . . . C 3 -1.66 25.722 0.301 1 43.5 ? N10 FMN 402 A 1 HETATM 18 C C10 FMN . . . C 3 -1.795 26.248 1.57 1 44.03 ? C10 FMN 402 A 1 HETATM 19 C C1' FMN . . . C 3 -2.462 26.293 -0.827 1 44.97 ? C1' FMN 402 A 1 HETATM 20 C C2' FMN . . . C 3 -3.859 25.689 -0.877 1 47.21 ? C2' FMN 402 A 1 HETATM 21 O O2' FMN . . . C 3 -3.794 24.286 -0.753 1 47.9 ? O2' FMN 402 A 1 HETATM 22 C C3' FMN . . . C 3 -4.509 26.05 -2.205 1 49.05 ? C3' FMN 402 A 1 HETATM 23 O O3' FMN . . . C 3 -3.74 25.529 -3.265 1 49.86 ? O3' FMN 402 A 1 HETATM 24 C C4' FMN . . . C 3 -4.627 27.559 -2.362 1 50.78 ? C4' FMN 402 A 1 HETATM 25 O O4' FMN . . . C 3 -5.446 28.055 -1.331 1 52.49 ? O4' FMN 402 A 1 HETATM 26 C C5' FMN . . . C 3 -5.247 27.917 -3.702 1 51.36 ? C5' FMN 402 A 1 HETATM 27 O O5' FMN . . . C 3 -6.494 27.264 -3.758 1 53.57 ? O5' FMN 402 A 1 HETATM 28 P P FMN . . . C 3 -7.513 27.527 -4.969 1 46.24 ? P FMN 402 A 1 HETATM 29 O O1P FMN . . . C 3 -6.798 27.176 -6.251 1 53.37 ? O1P FMN 402 A 1 HETATM 30 O O2P FMN . . . C 3 -7.938 28.976 -4.968 1 43.36 -1 O2P FMN 402 A 1 HETATM 31 O O3P FMN . . . C 3 -8.714 26.63 -4.804 1 48.04 ? O3P FMN 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #