data_5HZI
#
_model_server_result.job_id            xzyOuurYVAEFqLThsiPueQ 
_model_server_result.datetime_utc      '2024-11-16 08:20:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hzi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1801}' 
#
_entry.id    5HZI 
#
_exptl.entry_id    5HZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.63 
_cell.angle_gamma         90 
_cell.entry_id            5HZI 
_cell.length_a            62.06 
_cell.length_b            111.53 
_cell.length_c            88.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     5HZI 
_atom_sites.fract_transf_matrix[1][1]    0.016113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000178 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 1801 1723 FMN FMN . 
D 2 FMN B 1 1801 1724 FMN FMN . 
E 3 HOH A 1 1901 2 HOH HOH . 
E 3 HOH A 2 1902 47 HOH HOH . 
E 3 HOH A 3 1903 51 HOH HOH . 
E 3 HOH A 4 1904 7 HOH HOH . 
E 3 HOH A 5 1905 38 HOH HOH . 
E 3 HOH A 6 1906 43 HOH HOH . 
E 3 HOH A 7 1907 1 HOH HOH . 
E 3 HOH A 8 1908 32 HOH HOH . 
E 3 HOH A 9 1909 14 HOH HOH . 
E 3 HOH A 10 1910 5 HOH HOH . 
E 3 HOH A 11 1911 46 HOH HOH . 
E 3 HOH A 12 1912 31 HOH HOH . 
E 3 HOH A 13 1913 9 HOH HOH . 
E 3 HOH A 14 1914 6 HOH HOH . 
E 3 HOH A 15 1915 12 HOH HOH . 
E 3 HOH A 16 1916 25 HOH HOH . 
E 3 HOH A 17 1917 23 HOH HOH . 
E 3 HOH A 18 1918 4 HOH HOH . 
E 3 HOH A 19 1919 36 HOH HOH . 
E 3 HOH A 20 1920 48 HOH HOH . 
E 3 HOH A 21 1921 45 HOH HOH . 
E 3 HOH A 22 1922 21 HOH HOH . 
E 3 HOH A 23 1923 8 HOH HOH . 
F 3 HOH B 1 1901 27 HOH HOH . 
F 3 HOH B 2 1902 53 HOH HOH . 
F 3 HOH B 3 1903 30 HOH HOH . 
F 3 HOH B 4 1904 37 HOH HOH . 
F 3 HOH B 5 1905 15 HOH HOH . 
F 3 HOH B 6 1906 26 HOH HOH . 
F 3 HOH B 7 1907 41 HOH HOH . 
F 3 HOH B 8 1908 34 HOH HOH . 
F 3 HOH B 9 1909 24 HOH HOH . 
F 3 HOH B 10 1910 10 HOH HOH . 
F 3 HOH B 11 1911 35 HOH HOH . 
F 3 HOH B 12 1912 39 HOH HOH . 
F 3 HOH B 13 1913 13 HOH HOH . 
F 3 HOH B 14 1914 33 HOH HOH . 
F 3 HOH B 15 1915 18 HOH HOH . 
F 3 HOH B 16 1916 52 HOH HOH . 
F 3 HOH B 17 1917 16 HOH HOH . 
F 3 HOH B 18 1918 19 HOH HOH . 
F 3 HOH B 19 1919 40 HOH HOH . 
F 3 HOH B 20 1920 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 2 8.353 -1.497 -3.019 1 56.14 ? N1 FMN 1801 B 1 
HETATM 2 C C2 FMN . . . D 2 7.048 -1.942 -3.079 1 57.17 ? C2 FMN 1801 B 1 
HETATM 3 O O2 FMN . . . D 2 6.139 -1.236 -2.648 1 64.8 ? O2 FMN 1801 B 1 
HETATM 4 N N3 FMN . . . D 2 6.76 -3.179 -3.621 1 56.05 ? N3 FMN 1801 B 1 
HETATM 5 C C4 FMN . . . D 2 7.777 -3.976 -4.105 1 56.96 ? C4 FMN 1801 B 1 
HETATM 6 O O4 FMN . . . D 2 7.52 -5.078 -4.587 1 55.16 ? O4 FMN 1801 B 1 
HETATM 7 C C4A FMN . . . D 2 9.092 -3.532 -4.046 1 56.79 ? C4A FMN 1801 B 1 
HETATM 8 N N5 FMN . . . D 2 10.112 -4.325 -4.53 1 51.41 ? N5 FMN 1801 B 1 
HETATM 9 C C5A FMN . . . D 2 11.417 -3.88 -4.472 1 47.93 ? C5A FMN 1801 B 1 
HETATM 10 C C6 FMN . . . D 2 12.445 -4.68 -4.959 1 41.98 ? C6 FMN 1801 B 1 
HETATM 11 C C7 FMN . . . D 2 13.76 -4.234 -4.9 1 44.88 ? C7 FMN 1801 B 1 
HETATM 12 C C7M FMN . . . D 2 14.868 -5.098 -5.426 1 47.43 ? C7M FMN 1801 B 1 
HETATM 13 C C8 FMN . . . D 2 14.046 -2.988 -4.354 1 46.29 ? C8 FMN 1801 B 1 
HETATM 14 C C8M FMN . . . D 2 15.463 -2.5 -4.286 1 44.25 ? C8M FMN 1801 B 1 
HETATM 15 C C9 FMN . . . D 2 13.019 -2.19 -3.867 1 44.52 ? C9 FMN 1801 B 1 
HETATM 16 C C9A FMN . . . D 2 11.704 -2.634 -3.925 1 48.83 ? C9A FMN 1801 B 1 
HETATM 17 N N10 FMN . . . D 2 10.682 -1.838 -3.446 1 55.15 ? N10 FMN 1801 B 1 
HETATM 18 C C10 FMN . . . D 2 9.378 -2.286 -3.5 1 56.02 ? C10 FMN 1801 B 1 
HETATM 19 C C1' FMN . . . D 2 10.992 -0.496 -2.848 1 62.99 ? C1' FMN 1801 B 1 
HETATM 20 C C2' FMN . . . D 2 10.855 0.624 -3.872 1 61.68 ? C2' FMN 1801 B 1 
HETATM 21 O O2' FMN . . . D 2 11.571 0.297 -5.041 1 62.92 ? O2' FMN 1801 B 1 
HETATM 22 C C3' FMN . . . D 2 11.4 1.926 -3.301 1 64.45 ? C3' FMN 1801 B 1 
HETATM 23 O O3' FMN . . . D 2 12.753 1.749 -2.946 1 65.25 ? O3' FMN 1801 B 1 
HETATM 24 C C4' FMN . . . D 2 10.61 2.352 -2.07 1 71.07 ? C4' FMN 1801 B 1 
HETATM 25 O O4' FMN . . . D 2 9.238 2.386 -2.387 1 73.45 ? O4' FMN 1801 B 1 
HETATM 26 C C5' FMN . . . D 2 11.05 3.729 -1.591 1 71.3 ? C5' FMN 1801 B 1 
HETATM 27 O O5' FMN . . . D 2 10.694 4.687 -2.561 1 71.25 ? O5' FMN 1801 B 1 
HETATM 28 P P FMN . . . D 2 11.102 6.231 -2.371 1 65.76 ? P FMN 1801 B 1 
HETATM 29 O O1P FMN . . . D 2 12.581 6.374 -2.641 1 67.16 ? O1P FMN 1801 B 1 
HETATM 30 O O2P FMN . . . D 2 10.798 6.661 -0.956 1 77.8 -1 O2P FMN 1801 B 1 
HETATM 31 O O3P FMN . . . D 2 10.323 7.086 -3.341 1 69.92 ? O3P FMN 1801 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#