data_5HZJ # _model_server_result.job_id LugIIqoFk6S_5h2-rA9bXw _model_server_result.datetime_utc '2024-11-16 08:19:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1801}' # _entry.id 5HZJ # _exptl.entry_id 5HZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.12 _cell.angle_gamma 90 _cell.entry_id 5HZJ _cell.length_a 61.65 _cell.length_b 111.17 _cell.length_c 88.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5HZJ _atom_sites.fract_transf_matrix[1][1] 0.016221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000033 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 1801 1723 FMN FMN . D 2 FMN B 1 1801 1724 FMN FMN . E 3 HOH A 1 1901 5 HOH HOH . E 3 HOH A 2 1902 77 HOH HOH . E 3 HOH A 3 1903 15 HOH HOH . E 3 HOH A 4 1904 57 HOH HOH . E 3 HOH A 5 1905 34 HOH HOH . E 3 HOH A 6 1906 2 HOH HOH . E 3 HOH A 7 1907 46 HOH HOH . E 3 HOH A 8 1908 84 HOH HOH . E 3 HOH A 9 1909 18 HOH HOH . E 3 HOH A 10 1910 48 HOH HOH . E 3 HOH A 11 1911 29 HOH HOH . E 3 HOH A 12 1912 13 HOH HOH . E 3 HOH A 13 1913 64 HOH HOH . E 3 HOH A 14 1914 8 HOH HOH . E 3 HOH A 15 1915 40 HOH HOH . E 3 HOH A 16 1916 20 HOH HOH . E 3 HOH A 17 1917 62 HOH HOH . E 3 HOH A 18 1918 38 HOH HOH . E 3 HOH A 19 1919 10 HOH HOH . E 3 HOH A 20 1920 35 HOH HOH . E 3 HOH A 21 1921 24 HOH HOH . E 3 HOH A 22 1922 41 HOH HOH . E 3 HOH A 23 1923 69 HOH HOH . E 3 HOH A 24 1924 31 HOH HOH . E 3 HOH A 25 1925 81 HOH HOH . E 3 HOH A 26 1926 42 HOH HOH . E 3 HOH A 27 1927 22 HOH HOH . E 3 HOH A 28 1928 59 HOH HOH . E 3 HOH A 29 1929 82 HOH HOH . E 3 HOH A 30 1930 83 HOH HOH . E 3 HOH A 31 1931 76 HOH HOH . E 3 HOH A 32 1932 71 HOH HOH . E 3 HOH A 33 1933 43 HOH HOH . F 3 HOH B 1 1901 50 HOH HOH . F 3 HOH B 2 1902 49 HOH HOH . F 3 HOH B 3 1903 51 HOH HOH . F 3 HOH B 4 1904 7 HOH HOH . F 3 HOH B 5 1905 58 HOH HOH . F 3 HOH B 6 1906 25 HOH HOH . F 3 HOH B 7 1907 12 HOH HOH . F 3 HOH B 8 1908 36 HOH HOH . F 3 HOH B 9 1909 1 HOH HOH . F 3 HOH B 10 1910 23 HOH HOH . F 3 HOH B 11 1911 47 HOH HOH . F 3 HOH B 12 1912 56 HOH HOH . F 3 HOH B 13 1913 78 HOH HOH . F 3 HOH B 14 1914 16 HOH HOH . F 3 HOH B 15 1915 3 HOH HOH . F 3 HOH B 16 1916 6 HOH HOH . F 3 HOH B 17 1917 67 HOH HOH . F 3 HOH B 18 1918 66 HOH HOH . F 3 HOH B 19 1919 30 HOH HOH . F 3 HOH B 20 1920 72 HOH HOH . F 3 HOH B 21 1921 21 HOH HOH . F 3 HOH B 22 1922 54 HOH HOH . F 3 HOH B 23 1923 11 HOH HOH . F 3 HOH B 24 1924 65 HOH HOH . F 3 HOH B 25 1925 63 HOH HOH . F 3 HOH B 26 1926 32 HOH HOH . F 3 HOH B 27 1927 17 HOH HOH . F 3 HOH B 28 1928 9 HOH HOH . F 3 HOH B 29 1929 28 HOH HOH . F 3 HOH B 30 1930 52 HOH HOH . F 3 HOH B 31 1931 33 HOH HOH . F 3 HOH B 32 1932 26 HOH HOH . F 3 HOH B 33 1933 88 HOH HOH . F 3 HOH B 34 1934 79 HOH HOH . F 3 HOH B 35 1935 68 HOH HOH . F 3 HOH B 36 1936 73 HOH HOH . F 3 HOH B 37 1937 53 HOH HOH . F 3 HOH B 38 1938 61 HOH HOH . F 3 HOH B 39 1939 80 HOH HOH . F 3 HOH B 40 1940 39 HOH HOH . F 3 HOH B 41 1941 37 HOH HOH . F 3 HOH B 42 1942 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 22.582 22.407 32.069 1 47.51 ? N1 FMN 1801 A 1 HETATM 2 C C2 FMN . . . C 2 23.876 22.885 32.017 1 52.01 ? C2 FMN 1801 A 1 HETATM 3 O O2 FMN . . . C 2 24.799 22.198 32.449 1 56.07 ? O2 FMN 1801 A 1 HETATM 4 N N3 FMN . . . C 2 24.137 24.132 31.484 1 46.75 ? N3 FMN 1801 A 1 HETATM 5 C C4 FMN . . . C 2 23.105 24.908 30.998 1 47.66 ? C4 FMN 1801 A 1 HETATM 6 O O4 FMN . . . C 2 23.336 26.018 30.523 1 52.63 ? O4 FMN 1801 A 1 HETATM 7 C C4A FMN . . . C 2 21.801 24.431 31.045 1 45.15 ? C4A FMN 1801 A 1 HETATM 8 N N5 FMN . . . C 2 20.767 25.205 30.558 1 37.16 ? N5 FMN 1801 A 1 HETATM 9 C C5A FMN . . . C 2 19.473 24.729 30.61 1 34.03 ? C5A FMN 1801 A 1 HETATM 10 C C6 FMN . . . C 2 18.427 25.505 30.125 1 23.2 ? C6 FMN 1801 A 1 HETATM 11 C C7 FMN . . . C 2 17.124 25.021 30.178 1 30.47 ? C7 FMN 1801 A 1 HETATM 12 C C7M FMN . . . C 2 15.993 25.856 29.658 1 37.7 ? C7M FMN 1801 A 1 HETATM 13 C C8 FMN . . . C 2 16.871 23.764 30.716 1 36.34 ? C8 FMN 1801 A 1 HETATM 14 C C8M FMN . . . C 2 15.47 23.234 30.778 1 41.12 ? C8M FMN 1801 A 1 HETATM 15 C C9 FMN . . . C 2 17.915 22.992 31.201 1 33.62 ? C9 FMN 1801 A 1 HETATM 16 C C9A FMN . . . C 2 19.217 23.472 31.148 1 35.27 ? C9A FMN 1801 A 1 HETATM 17 N N10 FMN . . . C 2 20.251 22.696 31.628 1 43.92 ? N10 FMN 1801 A 1 HETATM 18 C C10 FMN . . . C 2 21.544 23.175 31.584 1 46.57 ? C10 FMN 1801 A 1 HETATM 19 C C1' FMN . . . C 2 19.967 21.345 32.219 1 49.8 ? C1' FMN 1801 A 1 HETATM 20 C C2' FMN . . . C 2 20.167 20.226 31.203 1 49.13 ? C2' FMN 1801 A 1 HETATM 21 O O2' FMN . . . C 2 19.395 20.479 30.051 1 51.77 ? O2' FMN 1801 A 1 HETATM 22 C C3' FMN . . . C 2 19.728 18.897 31.798 1 49.99 ? C3' FMN 1801 A 1 HETATM 23 O O3' FMN . . . C 2 18.327 18.9 31.95 1 57.41 ? O3' FMN 1801 A 1 HETATM 24 C C4' FMN . . . C 2 20.389 18.658 33.15 1 59.06 ? C4' FMN 1801 A 1 HETATM 25 O O4' FMN . . . C 2 21.789 18.677 32.993 1 61.28 ? O4' FMN 1801 A 1 HETATM 26 C C5' FMN . . . C 2 19.967 17.315 33.73 1 66.45 ? C5' FMN 1801 A 1 HETATM 27 O O5' FMN . . . C 2 20.466 16.293 32.898 1 76.39 ? O5' FMN 1801 A 1 HETATM 28 P P FMN . . . C 2 19.985 14.772 33.1 1 68.13 ? P FMN 1801 A 1 HETATM 29 O O1P FMN . . . C 2 18.6 14.627 32.515 1 52.22 ? O1P FMN 1801 A 1 HETATM 30 O O2P FMN . . . C 2 19.951 14.45 34.575 1 78.03 -1 O2P FMN 1801 A 1 HETATM 31 O O3P FMN . . . C 2 20.941 13.842 32.394 1 71.8 ? O3P FMN 1801 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #