data_5HZK # _model_server_result.job_id 5kr5afbONYnY3D21b5EHng _model_server_result.datetime_utc '2024-11-16 06:55:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1801}' # _entry.id 5HZK # _exptl.entry_id 5HZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HZK _cell.length_a 112.37 _cell.length_b 119.08 _cell.length_c 131.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5HZK _atom_sites.fract_transf_matrix[1][1] 0.008899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GDP A 1 200 200 GDP GDP . F 4 FMN B 1 1801 1723 FMN FMN . G 3 GDP C 1 201 201 GDP GDP . H 4 FMN D 1 1801 1724 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 4 -9.121 -4.457 28.078 1 63.61 ? N1 FMN 1801 D 1 HETATM 2 C C2 FMN . . . H 4 -9.515 -3.134 28.122 1 61.73 ? C2 FMN 1801 D 1 HETATM 3 O O2 FMN . . . H 4 -10.24 -2.681 27.239 1 58.29 ? O2 FMN 1801 D 1 HETATM 4 N N3 FMN . . . H 4 -9.098 -2.32 29.155 1 64.6 ? N3 FMN 1801 D 1 HETATM 5 C C4 FMN . . . H 4 -8.285 -2.824 30.149 1 72.41 ? C4 FMN 1801 D 1 HETATM 6 O O4 FMN . . . H 4 -7.914 -2.096 31.069 1 78.31 ? O4 FMN 1801 D 1 HETATM 7 C C4A FMN . . . H 4 -7.885 -4.154 30.109 1 71.88 ? C4A FMN 1801 D 1 HETATM 8 N N5 FMN . . . H 4 -7.072 -4.665 31.101 1 70.55 ? N5 FMN 1801 D 1 HETATM 9 C C5A FMN . . . H 4 -6.678 -5.987 31.056 1 70.3 ? C5A FMN 1801 D 1 HETATM 10 C C6 FMN . . . H 4 -5.859 -6.5 32.053 1 70.97 ? C6 FMN 1801 D 1 HETATM 11 C C7 FMN . . . H 4 -5.461 -7.831 32.01 1 72.7 ? C7 FMN 1801 D 1 HETATM 12 C C7M FMN . . . H 4 -4.577 -8.381 33.089 1 77.18 ? C7M FMN 1801 D 1 HETATM 13 C C8 FMN . . . H 4 -5.884 -8.649 30.968 1 67.49 ? C8 FMN 1801 D 1 HETATM 14 C C8M FMN . . . H 4 -5.459 -10.087 30.914 1 66.51 ? C8M FMN 1801 D 1 HETATM 15 C C9 FMN . . . H 4 -6.701 -8.136 29.97 1 64.54 ? C9 FMN 1801 D 1 HETATM 16 C C9A FMN . . . H 4 -7.1 -6.805 30.013 1 68.06 ? C9A FMN 1801 D 1 HETATM 17 N N10 FMN . . . H 4 -7.917 -6.295 29.023 1 67.16 ? N10 FMN 1801 D 1 HETATM 18 C C10 FMN . . . H 4 -8.307 -4.971 29.066 1 67.33 ? C10 FMN 1801 D 1 HETATM 19 C C1' FMN . . . H 4 -8.368 -7.174 27.896 1 69.51 ? C1' FMN 1801 D 1 HETATM 20 C C2' FMN . . . H 4 -9.743 -7.763 28.19 1 79.6 ? C2' FMN 1801 D 1 HETATM 21 O O2' FMN . . . H 4 -9.768 -8.289 29.497 1 80.56 ? O2' FMN 1801 D 1 HETATM 22 C C3' FMN . . . H 4 -10.077 -8.865 27.191 1 90.83 ? C3' FMN 1801 D 1 HETATM 23 O O3' FMN . . . H 4 -9.06 -9.843 27.206 1 93.81 ? O3' FMN 1801 D 1 HETATM 24 C C4' FMN . . . H 4 -10.216 -8.291 25.786 1 86.23 ? C4' FMN 1801 D 1 HETATM 25 O O4' FMN . . . H 4 -11.195 -7.277 25.795 1 83.63 ? O4' FMN 1801 D 1 HETATM 26 C C5' FMN . . . H 4 -10.621 -9.371 24.791 1 78.54 ? C5' FMN 1801 D 1 HETATM 27 O O5' FMN . . . H 4 -11.932 -9.795 25.089 1 76.84 ? O5' FMN 1801 D 1 HETATM 28 P P FMN . . . H 4 -12.621 -10.979 24.246 1 93.85 ? P FMN 1801 D 1 HETATM 29 O O1P FMN . . . H 4 -11.938 -12.276 24.609 1 92.4 ? O1P FMN 1801 D 1 HETATM 30 O O2P FMN . . . H 4 -12.464 -10.705 22.768 1 94.22 -1 O2P FMN 1801 D 1 HETATM 31 O O3P FMN . . . H 4 -14.088 -11.06 24.596 1 89.81 ? O3P FMN 1801 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #