data_5HZL # _model_server_result.job_id 9Iu3mAVBCzrk4qBNRnYInw _model_server_result.datetime_utc '2024-11-05 00:41:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hzl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 5HZL # _exptl.entry_id 5HZL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HZL _cell.length_a 120.35 _cell.length_b 120.35 _cell.length_c 62.286 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 27 B GLU 27 1_555 B CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A OE1 GLU 31 B GLU 31 1_555 B CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc3 A OE2 GLU 31 B GLU 31 1_555 B CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A O GLY 35 B GLY 35 1_555 H CA CA . B CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc5 A OD1 ASP 38 B ASP 38 1_555 H CA CA . B CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc6 A OD1 ASP 40 B ASP 40 1_555 C CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 A OD1 ASP 44 B ASP 44 1_555 C CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc8 A OD2 ASP 44 B ASP 44 1_555 C CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? covale ? covale1 A C THR 53 B THR 53 1_555 A N MSE 54 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 54 B MSE 54 1_555 A N THR 55 B THR 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 143 B GLY 143 1_555 A N MSE 144 B MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C MSE 144 B MSE 144 1_555 A N GLU 145 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ASN 151 B ASN 151 1_555 A N MSE 152 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C MSE 152 B MSE 152 1_555 A N GLU 153 B GLU 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc9 A OE1 GLU 153 B GLU 153 1_555 E CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc10 A OE2 GLU 153 B GLU 153 1_555 E CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc11 A OE1 GLU 163 B GLU 163 1_555 D CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? covale ? covale7 A C TRP 166 B TRP 166 1_555 A N MSE 167 B MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 167 B MSE 167 1_555 A N ASN 168 B ASN 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C ASN 168 B ASN 168 1_555 A N MSE 169 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale10 A C MSE 169 B MSE 169 1_555 A N PRO 170 B PRO 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc12 A OD1 ASP 173 B ASP 173 1_555 F CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc13 A OE2 GLU 187 B GLU 187 1_555 D CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc14 A O GLN 194 B GLN 194 1_555 F CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc15 A OD1 ASP 258 B ASP 258 1_555 G CA CA . B CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? covale ? covale11 A C TYR 261 B TYR 261 1_555 A N MSE 262 B MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 262 B MSE 262 1_555 A N TYR 263 B TYR 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc16 C CA CA . B CA 402 1_555 J O HOH . B HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc17 H CA CA . B CA 407 1_555 J O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? metalc ? metalc18 A OD2 ASP 40 B ASP 40 1_555 E CA CA . B CA 404 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc19 A OD1 ASN 109 B ASN 109 1_555 B CA CA . B CA 401 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc20 A OE2 GLU 153 B GLU 153 1_555 C CA CA . B CA 402 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc21 A OE1 GLU 179 B GLU 179 1_555 C CA CA . B CA 402 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc22 A OE2 GLU 179 B GLU 179 1_555 C CA CA . B CA 402 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc23 B CA CA . B CA 401 1_555 J O HOH . B HOH 521 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc24 B CA CA . B CA 401 1_555 J O HOH . B HOH 507 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc25 D CA CA . B CA 403 1_555 J O HOH . B HOH 504 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc26 E CA CA . B CA 404 1_555 J O HOH . B HOH 515 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc27 E CA CA . B CA 404 1_555 J O HOH . B HOH 532 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc28 E CA CA . B CA 404 1_555 J O HOH . B HOH 516 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HZL _atom_sites.fract_transf_matrix[1][1] 0.008309 _atom_sites.fract_transf_matrix[1][2] 0.004797 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA B 1 401 1 CA CA . C 2 CA B 1 402 2 CA CA . D 2 CA B 1 403 3 CA CA . E 2 CA B 1 404 5 CA CA . F 2 CA B 1 405 6 CA CA . G 2 CA B 1 406 7 CA CA . H 2 CA B 1 407 8 CA CA . I 3 PG5 B 1 408 1 PG5 PG5 . J 4 HOH B 1 501 18 HOH HOH . J 4 HOH B 2 502 35 HOH HOH . J 4 HOH B 3 503 36 HOH HOH . J 4 HOH B 4 504 7 HOH HOH . J 4 HOH B 5 505 29 HOH HOH . J 4 HOH B 6 506 5 HOH HOH . J 4 HOH B 7 507 14 HOH HOH . J 4 HOH B 8 508 28 HOH HOH . J 4 HOH B 9 509 33 HOH HOH . J 4 HOH B 10 510 4 HOH HOH . J 4 HOH B 11 511 8 HOH HOH . J 4 HOH B 12 512 13 HOH HOH . J 4 HOH B 13 513 26 HOH HOH . J 4 HOH B 14 514 2 HOH HOH . J 4 HOH B 15 515 22 HOH HOH . J 4 HOH B 16 516 21 HOH HOH . J 4 HOH B 17 517 3 HOH HOH . J 4 HOH B 18 518 16 HOH HOH . J 4 HOH B 19 519 25 HOH HOH . J 4 HOH B 20 520 11 HOH HOH . J 4 HOH B 21 521 1 HOH HOH . J 4 HOH B 22 522 30 HOH HOH . J 4 HOH B 23 523 27 HOH HOH . J 4 HOH B 24 524 31 HOH HOH . J 4 HOH B 25 525 15 HOH HOH . J 4 HOH B 26 526 17 HOH HOH . J 4 HOH B 27 527 32 HOH HOH . J 4 HOH B 28 528 9 HOH HOH . J 4 HOH B 29 529 19 HOH HOH . J 4 HOH B 30 530 24 HOH HOH . J 4 HOH B 31 531 34 HOH HOH . J 4 HOH B 32 532 23 HOH HOH . J 4 HOH B 33 533 12 HOH HOH . J 4 HOH B 34 534 10 HOH HOH . J 4 HOH B 35 535 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PG5 . . . I 3 52.72 -13.791 -9.09 1 65.3 ? C1 PG5 408 B 1 HETATM 2 O O1 PG5 . . . I 3 53.431 -12.96 -8.161 1 67.32 ? O1 PG5 408 B 1 HETATM 3 C C2 PG5 . . . I 3 53.361 -11.546 -8.409 1 68.17 ? C2 PG5 408 B 1 HETATM 4 C C3 PG5 . . . I 3 53.996 -10.726 -7.281 1 69.61 ? C3 PG5 408 B 1 HETATM 5 O O2 PG5 . . . I 3 55.04 -9.869 -7.783 1 71.99 ? O2 PG5 408 B 1 HETATM 6 C C4 PG5 . . . I 3 54.592 -8.573 -8.202 1 71.15 ? C4 PG5 408 B 1 HETATM 7 C C5 PG5 . . . I 3 55.746 -7.756 -8.791 1 69.33 ? C5 PG5 408 B 1 HETATM 8 O O3 PG5 . . . I 3 55.331 -6.39 -8.95 1 68.22 ? O3 PG5 408 B 1 HETATM 9 C C6 PG5 . . . I 3 56.327 -5.383 -8.698 1 70.45 ? C6 PG5 408 B 1 HETATM 10 C C7 PG5 . . . I 3 55.671 -4.011 -8.485 1 72.38 ? C7 PG5 408 B 1 HETATM 11 O O4 PG5 . . . I 3 56.49 -2.94 -8.99 1 70.27 ? O4 PG5 408 B 1 HETATM 12 C C8 PG5 . . . I 3 55.763 -1.829 -9.537 1 65.83 ? C8 PG5 408 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #