data_5I03
#
_model_server_result.job_id            1DlmfWxasVLMjmhukVw1hA 
_model_server_result.datetime_utc      '2024-11-15 05:52:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i03 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5I03 
#
_exptl.entry_id    5I03 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.6 
_cell.angle_gamma         90 
_cell.entry_id            5I03 
_cell.length_a            85.14 
_cell.length_b            64.641 
_cell.length_c            71.017 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I03 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 170.28 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5I03 
_atom_sites.fract_transf_matrix[1][1]    0.011745 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00074 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01547 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 1 GOL GOL . 
C 2 GOL A 1 402 2 GOL GOL . 
D 3 ZN A 1 403 1 ZN ZN . 
E 4 EDO A 1 404 1 EDO EDO . 
F 5 NEZ A 1 405 1 NEZ N10 . 
G 6 HOH A 1 501 284 HOH HOH . 
G 6 HOH A 2 502 119 HOH HOH . 
G 6 HOH A 3 503 212 HOH HOH . 
G 6 HOH A 4 504 320 HOH HOH . 
G 6 HOH A 5 505 92 HOH HOH . 
G 6 HOH A 6 506 61 HOH HOH . 
G 6 HOH A 7 507 93 HOH HOH . 
G 6 HOH A 8 508 74 HOH HOH . 
G 6 HOH A 9 509 286 HOH HOH . 
G 6 HOH A 10 510 314 HOH HOH . 
G 6 HOH A 11 511 118 HOH HOH . 
G 6 HOH A 12 512 330 HOH HOH . 
G 6 HOH A 13 513 17 HOH HOH . 
G 6 HOH A 14 514 168 HOH HOH . 
G 6 HOH A 15 515 48 HOH HOH . 
G 6 HOH A 16 516 40 HOH HOH . 
G 6 HOH A 17 517 71 HOH HOH . 
G 6 HOH A 18 518 128 HOH HOH . 
G 6 HOH A 19 519 126 HOH HOH . 
G 6 HOH A 20 520 96 HOH HOH . 
G 6 HOH A 21 521 230 HOH HOH . 
G 6 HOH A 22 522 20 HOH HOH . 
G 6 HOH A 23 523 312 HOH HOH . 
G 6 HOH A 24 524 121 HOH HOH . 
G 6 HOH A 25 525 76 HOH HOH . 
G 6 HOH A 26 526 59 HOH HOH . 
G 6 HOH A 27 527 102 HOH HOH . 
G 6 HOH A 28 528 38 HOH HOH . 
G 6 HOH A 29 529 190 HOH HOH . 
G 6 HOH A 30 530 104 HOH HOH . 
G 6 HOH A 31 531 90 HOH HOH . 
G 6 HOH A 32 532 255 HOH HOH . 
G 6 HOH A 33 533 131 HOH HOH . 
G 6 HOH A 34 534 142 HOH HOH . 
G 6 HOH A 35 535 306 HOH HOH . 
G 6 HOH A 36 536 84 HOH HOH . 
G 6 HOH A 37 537 297 HOH HOH . 
G 6 HOH A 38 538 161 HOH HOH . 
G 6 HOH A 39 539 2 HOH HOH . 
G 6 HOH A 40 540 120 HOH HOH . 
G 6 HOH A 41 541 95 HOH HOH . 
G 6 HOH A 42 542 50 HOH HOH . 
G 6 HOH A 43 543 41 HOH HOH . 
G 6 HOH A 44 544 184 HOH HOH . 
G 6 HOH A 45 545 15 HOH HOH . 
G 6 HOH A 46 546 301 HOH HOH . 
G 6 HOH A 47 547 29 HOH HOH . 
G 6 HOH A 48 548 319 HOH HOH . 
G 6 HOH A 49 549 1 HOH HOH . 
G 6 HOH A 50 550 196 HOH HOH . 
G 6 HOH A 51 551 273 HOH HOH . 
G 6 HOH A 52 552 70 HOH HOH . 
G 6 HOH A 53 553 33 HOH HOH . 
G 6 HOH A 54 554 159 HOH HOH . 
G 6 HOH A 55 555 259 HOH HOH . 
G 6 HOH A 56 556 79 HOH HOH . 
G 6 HOH A 57 557 81 HOH HOH . 
G 6 HOH A 58 558 39 HOH HOH . 
G 6 HOH A 59 559 32 HOH HOH . 
G 6 HOH A 60 560 8 HOH HOH . 
G 6 HOH A 61 561 42 HOH HOH . 
G 6 HOH A 62 562 105 HOH HOH . 
G 6 HOH A 63 563 103 HOH HOH . 
G 6 HOH A 64 564 115 HOH HOH . 
G 6 HOH A 65 565 44 HOH HOH . 
G 6 HOH A 66 566 114 HOH HOH . 
G 6 HOH A 67 567 45 HOH HOH . 
G 6 HOH A 68 568 4 HOH HOH . 
G 6 HOH A 69 569 172 HOH HOH . 
G 6 HOH A 70 570 14 HOH HOH . 
G 6 HOH A 71 571 18 HOH HOH . 
G 6 HOH A 72 572 67 HOH HOH . 
G 6 HOH A 73 573 43 HOH HOH . 
G 6 HOH A 74 574 25 HOH HOH . 
G 6 HOH A 75 575 175 HOH HOH . 
G 6 HOH A 76 576 155 HOH HOH . 
G 6 HOH A 77 577 73 HOH HOH . 
G 6 HOH A 78 578 9 HOH HOH . 
G 6 HOH A 79 579 179 HOH HOH . 
G 6 HOH A 80 580 176 HOH HOH . 
G 6 HOH A 81 581 63 HOH HOH . 
G 6 HOH A 82 582 77 HOH HOH . 
G 6 HOH A 83 583 146 HOH HOH . 
G 6 HOH A 84 584 21 HOH HOH . 
G 6 HOH A 85 585 254 HOH HOH . 
G 6 HOH A 86 586 3 HOH HOH . 
G 6 HOH A 87 587 60 HOH HOH . 
G 6 HOH A 88 588 86 HOH HOH . 
G 6 HOH A 89 589 288 HOH HOH . 
G 6 HOH A 90 590 91 HOH HOH . 
G 6 HOH A 91 591 23 HOH HOH . 
G 6 HOH A 92 592 36 HOH HOH . 
G 6 HOH A 93 593 55 HOH HOH . 
G 6 HOH A 94 594 19 HOH HOH . 
G 6 HOH A 95 595 143 HOH HOH . 
G 6 HOH A 96 596 27 HOH HOH . 
G 6 HOH A 97 597 328 HOH HOH . 
G 6 HOH A 98 598 100 HOH HOH . 
G 6 HOH A 99 599 35 HOH HOH . 
G 6 HOH A 100 600 281 HOH HOH . 
G 6 HOH A 101 601 116 HOH HOH . 
G 6 HOH A 102 602 54 HOH HOH . 
G 6 HOH A 103 603 46 HOH HOH . 
G 6 HOH A 104 604 237 HOH HOH . 
G 6 HOH A 105 605 267 HOH HOH . 
G 6 HOH A 106 606 57 HOH HOH . 
G 6 HOH A 107 607 97 HOH HOH . 
G 6 HOH A 108 608 5 HOH HOH . 
G 6 HOH A 109 609 34 HOH HOH . 
G 6 HOH A 110 610 215 HOH HOH . 
G 6 HOH A 111 611 234 HOH HOH . 
G 6 HOH A 112 612 72 HOH HOH . 
G 6 HOH A 113 613 52 HOH HOH . 
G 6 HOH A 114 614 98 HOH HOH . 
G 6 HOH A 115 615 94 HOH HOH . 
G 6 HOH A 116 616 252 HOH HOH . 
G 6 HOH A 117 617 272 HOH HOH . 
G 6 HOH A 118 618 108 HOH HOH . 
G 6 HOH A 119 619 49 HOH HOH . 
G 6 HOH A 120 620 12 HOH HOH . 
G 6 HOH A 121 621 261 HOH HOH . 
G 6 HOH A 122 622 141 HOH HOH . 
G 6 HOH A 123 623 149 HOH HOH . 
G 6 HOH A 124 624 10 HOH HOH . 
G 6 HOH A 125 625 122 HOH HOH . 
G 6 HOH A 126 626 258 HOH HOH . 
G 6 HOH A 127 627 248 HOH HOH . 
G 6 HOH A 128 628 274 HOH HOH . 
G 6 HOH A 129 629 285 HOH HOH . 
G 6 HOH A 130 630 26 HOH HOH . 
G 6 HOH A 131 631 139 HOH HOH . 
G 6 HOH A 132 632 80 HOH HOH . 
G 6 HOH A 133 633 82 HOH HOH . 
G 6 HOH A 134 634 101 HOH HOH . 
G 6 HOH A 135 635 24 HOH HOH . 
G 6 HOH A 136 636 85 HOH HOH . 
G 6 HOH A 137 637 304 HOH HOH . 
G 6 HOH A 138 638 58 HOH HOH . 
G 6 HOH A 139 639 51 HOH HOH . 
G 6 HOH A 140 640 289 HOH HOH . 
G 6 HOH A 141 641 144 HOH HOH . 
G 6 HOH A 142 642 151 HOH HOH . 
G 6 HOH A 143 643 47 HOH HOH . 
G 6 HOH A 144 644 236 HOH HOH . 
G 6 HOH A 145 645 201 HOH HOH . 
G 6 HOH A 146 646 37 HOH HOH . 
G 6 HOH A 147 647 66 HOH HOH . 
G 6 HOH A 148 648 53 HOH HOH . 
G 6 HOH A 149 649 111 HOH HOH . 
G 6 HOH A 150 650 197 HOH HOH . 
G 6 HOH A 151 651 68 HOH HOH . 
G 6 HOH A 152 652 216 HOH HOH . 
G 6 HOH A 153 653 205 HOH HOH . 
G 6 HOH A 154 654 228 HOH HOH . 
G 6 HOH A 155 655 223 HOH HOH . 
G 6 HOH A 156 656 89 HOH HOH . 
G 6 HOH A 157 657 64 HOH HOH . 
G 6 HOH A 158 658 113 HOH HOH . 
G 6 HOH A 159 659 6 HOH HOH . 
G 6 HOH A 160 660 183 HOH HOH . 
G 6 HOH A 161 661 134 HOH HOH . 
G 6 HOH A 162 662 192 HOH HOH . 
G 6 HOH A 163 663 241 HOH HOH . 
G 6 HOH A 164 664 125 HOH HOH . 
G 6 HOH A 165 665 195 HOH HOH . 
G 6 HOH A 166 666 88 HOH HOH . 
G 6 HOH A 167 667 280 HOH HOH . 
G 6 HOH A 168 668 22 HOH HOH . 
G 6 HOH A 169 669 158 HOH HOH . 
G 6 HOH A 170 670 278 HOH HOH . 
G 6 HOH A 171 671 13 HOH HOH . 
G 6 HOH A 172 672 206 HOH HOH . 
G 6 HOH A 173 673 127 HOH HOH . 
G 6 HOH A 174 674 300 HOH HOH . 
G 6 HOH A 175 675 260 HOH HOH . 
G 6 HOH A 176 676 242 HOH HOH . 
G 6 HOH A 177 677 263 HOH HOH . 
G 6 HOH A 178 678 148 HOH HOH . 
G 6 HOH A 179 679 219 HOH HOH . 
G 6 HOH A 180 680 157 HOH HOH . 
G 6 HOH A 181 681 292 HOH HOH . 
G 6 HOH A 182 682 65 HOH HOH . 
G 6 HOH A 183 683 202 HOH HOH . 
G 6 HOH A 184 684 69 HOH HOH . 
G 6 HOH A 185 685 269 HOH HOH . 
G 6 HOH A 186 686 145 HOH HOH . 
G 6 HOH A 187 687 318 HOH HOH . 
G 6 HOH A 188 688 30 HOH HOH . 
G 6 HOH A 189 689 207 HOH HOH . 
G 6 HOH A 190 690 99 HOH HOH . 
G 6 HOH A 191 691 31 HOH HOH . 
G 6 HOH A 192 692 311 HOH HOH . 
G 6 HOH A 193 693 182 HOH HOH . 
G 6 HOH A 194 694 265 HOH HOH . 
G 6 HOH A 195 695 334 HOH HOH . 
G 6 HOH A 196 696 277 HOH HOH . 
G 6 HOH A 197 697 165 HOH HOH . 
G 6 HOH A 198 698 335 HOH HOH . 
G 6 HOH A 199 699 169 HOH HOH . 
G 6 HOH A 200 700 313 HOH HOH . 
G 6 HOH A 201 701 129 HOH HOH . 
G 6 HOH A 202 702 203 HOH HOH . 
G 6 HOH A 203 703 336 HOH HOH . 
G 6 HOH A 204 704 117 HOH HOH . 
G 6 HOH A 205 705 198 HOH HOH . 
G 6 HOH A 206 706 279 HOH HOH . 
G 6 HOH A 207 707 243 HOH HOH . 
G 6 HOH A 208 708 257 HOH HOH . 
G 6 HOH A 209 709 299 HOH HOH . 
G 6 HOH A 210 710 290 HOH HOH . 
G 6 HOH A 211 711 251 HOH HOH . 
G 6 HOH A 212 712 238 HOH HOH . 
G 6 HOH A 213 713 189 HOH HOH . 
G 6 HOH A 214 714 220 HOH HOH . 
G 6 HOH A 215 715 271 HOH HOH . 
G 6 HOH A 216 716 181 HOH HOH . 
G 6 HOH A 217 717 154 HOH HOH . 
G 6 HOH A 218 718 123 HOH HOH . 
G 6 HOH A 219 719 316 HOH HOH . 
G 6 HOH A 220 720 295 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 107.812 -0.58 35.953 1 39.61 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . C 2 107.346 -1.609 36.8 1 43.01 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . C 2 109.025 -1.1 35.19 1 31.57 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . C 2 108.612 -2.104 34.284 1 33.09 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . C 2 109.753 0.026 34.453 1 31.8 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . C 2 109.009 0.427 33.328 1 26.39 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#