data_5I04 # _model_server_result.job_id O7bkA8XolABqQeTj2ayDAg _model_server_result.datetime_utc '2024-12-29 14:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 5I04 # _exptl.entry_id 5I04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5I04 _cell.length_a 114.15 _cell.length_b 114.15 _cell.length_c 120.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC X 1 MAL 2 n B GLC 2 B 2 GLC X 1 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 379 A CYS 430 1_555 A SG CYS 556 A CYS 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 402 A CYS 453 1_555 A SG CYS 531 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 451 A ASN 502 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 291 n n C1 C2 PGE sing 292 n n C1 H1 PGE sing 293 n n C1 H12 PGE sing 294 n n O1 HO1 PGE sing 295 n n C2 O2 PGE sing 296 n n C2 H2 PGE sing 297 n n C2 H22 PGE sing 298 n n O2 C3 PGE sing 299 n n C3 C4 PGE sing 300 n n C3 H3 PGE sing 301 n n C3 H32 PGE sing 302 n n C4 O3 PGE sing 303 n n C4 H4 PGE sing 304 n n C4 H42 PGE sing 305 n n O4 C6 PGE sing 306 n n O4 HO4 PGE sing 307 n n C6 C5 PGE sing 308 n n C6 H6 PGE sing 309 n n C6 H62 PGE sing 310 n n C5 O3 PGE sing 311 n n C5 H5 PGE sing 312 n n C5 H52 PGE sing 313 n n # _atom_sites.entry_id 5I04 _atom_sites.fract_transf_matrix[1][1] 0.00876 _atom_sites.fract_transf_matrix[1][2] 0.005058 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 1000 NAG NAG . D 4 PGE A 1 803 2 PGE PGE . E 4 PGE A 1 804 3 PGE PGE . F 4 PGE A 1 805 4 PGE PGE . G 5 HOH A 1 901 9 HOH HOH . G 5 HOH A 2 902 16 HOH HOH . G 5 HOH A 3 903 13 HOH HOH . G 5 HOH A 4 904 21 HOH HOH . G 5 HOH A 5 905 1 HOH HOH . G 5 HOH A 6 906 5 HOH HOH . G 5 HOH A 7 907 15 HOH HOH . G 5 HOH A 8 908 6 HOH HOH . G 5 HOH A 9 909 7 HOH HOH . G 5 HOH A 10 910 26 HOH HOH . G 5 HOH A 11 911 17 HOH HOH . G 5 HOH A 12 912 2 HOH HOH . G 5 HOH A 13 913 8 HOH HOH . G 5 HOH A 14 914 11 HOH HOH . G 5 HOH A 15 915 4 HOH HOH . G 5 HOH A 16 916 22 HOH HOH . G 5 HOH A 17 917 12 HOH HOH . G 5 HOH A 18 918 10 HOH HOH . G 5 HOH A 19 919 18 HOH HOH . G 5 HOH A 20 920 14 HOH HOH . G 5 HOH A 21 921 24 HOH HOH . G 5 HOH A 22 922 23 HOH HOH . G 5 HOH A 23 923 3 HOH HOH . G 5 HOH A 24 924 20 HOH HOH . G 5 HOH A 25 925 25 HOH HOH . G 5 HOH A 26 926 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . E 4 77.177 30.082 73.405 1 111.01 ? C1 PGE 804 A 1 HETATM 2 O O1 PGE . . . E 4 78.166 29.096 73.663 1 115.85 ? O1 PGE 804 A 1 HETATM 3 C C2 PGE . . . E 4 76.746 30.731 74.705 1 108.78 ? C2 PGE 804 A 1 HETATM 4 O O2 PGE . . . E 4 77.537 31.877 74.962 1 110.03 ? O2 PGE 804 A 1 HETATM 5 C C3 PGE . . . E 4 76.793 33.055 75.223 1 106.22 ? C3 PGE 804 A 1 HETATM 6 C C4 PGE . . . E 4 77.628 34.01 76.054 1 108.27 ? C4 PGE 804 A 1 HETATM 7 O O4 PGE . . . E 4 81.811 35.209 75.021 1 130.98 ? O4 PGE 804 A 1 HETATM 8 C C6 PGE . . . E 4 81.247 34.47 76.096 1 128.56 ? C6 PGE 804 A 1 HETATM 9 C C5 PGE . . . E 4 79.804 34.891 76.29 1 121.52 ? C5 PGE 804 A 1 HETATM 10 O O3 PGE . . . E 4 78.958 34.011 75.577 1 116.51 ? O3 PGE 804 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #