data_5I05 # _model_server_result.job_id ADpsIb_3cJOMQqZwtM_9eg _model_server_result.datetime_utc '2024-11-04 23:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 5I05 # _exptl.entry_id 5I05 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I05 _cell.length_a 71.06 _cell.length_b 71.06 _cell.length_c 145.67 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_454 -x-1/2,y,-z-1/4 -1 0 0 0 1 0 0 0 -1 -35.53 0 -36.4175 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 73 A CYS 73 1_555 A SG CYS 73 A CYS 73 5_454 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5I05 _atom_sites.fract_transf_matrix[1][1] 0.014073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 900 900 GOL GOL . C 2 GOL A 1 901 901 GOL GOL . D 3 HOH A 1 1001 23 HOH HOH . D 3 HOH A 2 1002 43 HOH HOH . D 3 HOH A 3 1003 1 HOH HOH . D 3 HOH A 4 1004 14 HOH HOH . D 3 HOH A 5 1005 6 HOH HOH . D 3 HOH A 6 1006 27 HOH HOH . D 3 HOH A 7 1007 20 HOH HOH . D 3 HOH A 8 1008 4 HOH HOH . D 3 HOH A 9 1009 22 HOH HOH . D 3 HOH A 10 1010 36 HOH HOH . D 3 HOH A 11 1011 9 HOH HOH . D 3 HOH A 12 1012 28 HOH HOH . D 3 HOH A 13 1013 21 HOH HOH . D 3 HOH A 14 1014 13 HOH HOH . D 3 HOH A 15 1015 10 HOH HOH . D 3 HOH A 16 1016 49 HOH HOH . D 3 HOH A 17 1017 25 HOH HOH . D 3 HOH A 18 1018 8 HOH HOH . D 3 HOH A 19 1019 31 HOH HOH . D 3 HOH A 20 1020 2 HOH HOH . D 3 HOH A 21 1021 26 HOH HOH . D 3 HOH A 22 1022 7 HOH HOH . D 3 HOH A 23 1023 5 HOH HOH . D 3 HOH A 24 1024 15 HOH HOH . D 3 HOH A 25 1025 32 HOH HOH . D 3 HOH A 26 1026 3 HOH HOH . D 3 HOH A 27 1027 38 HOH HOH . D 3 HOH A 28 1028 48 HOH HOH . D 3 HOH A 29 1029 30 HOH HOH . D 3 HOH A 30 1030 35 HOH HOH . D 3 HOH A 31 1031 37 HOH HOH . D 3 HOH A 32 1032 51 HOH HOH . D 3 HOH A 33 1033 33 HOH HOH . D 3 HOH A 34 1034 24 HOH HOH . D 3 HOH A 35 1035 18 HOH HOH . D 3 HOH A 36 1036 46 HOH HOH . D 3 HOH A 37 1037 19 HOH HOH . D 3 HOH A 38 1038 45 HOH HOH . D 3 HOH A 39 1039 40 HOH HOH . D 3 HOH A 40 1040 39 HOH HOH . D 3 HOH A 41 1041 47 HOH HOH . D 3 HOH A 42 1042 42 HOH HOH . D 3 HOH A 43 1043 50 HOH HOH . D 3 HOH A 44 1044 44 HOH HOH . D 3 HOH A 45 1045 41 HOH HOH . D 3 HOH A 46 1046 11 HOH HOH . D 3 HOH A 47 1047 52 HOH HOH . D 3 HOH A 48 1048 34 HOH HOH . D 3 HOH A 49 1049 17 HOH HOH . D 3 HOH A 50 1050 16 HOH HOH . D 3 HOH A 51 1051 29 HOH HOH . D 3 HOH A 52 1052 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 0.522 -2.583 -31.185 0.93 33.93 ? C1 GOL 900 A 1 HETATM 2 O O1 GOL . . . B 2 -0.013 -1.655 -32.1 0.93 34.54 ? O1 GOL 900 A 1 HETATM 3 C C2 GOL . . . B 2 1.256 -1.874 -30.049 0.93 38.69 ? C2 GOL 900 A 1 HETATM 4 O O2 GOL . . . B 2 1.059 -2.58 -28.846 0.93 67.62 ? O2 GOL 900 A 1 HETATM 5 C C3 GOL . . . B 2 2.751 -1.816 -30.33 0.93 68.57 ? C3 GOL 900 A 1 HETATM 6 O O3 GOL . . . B 2 3.087 -0.614 -30.961 0.93 43.17 ? O3 GOL 900 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #