data_5I06 # _model_server_result.job_id R-LZ3rmtLy8wPiMs7DGu3A _model_server_result.datetime_utc '2024-11-15 00:36:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5I06 # _exptl.entry_id 5I06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.85 _cell.angle_gamma 90 _cell.entry_id 5I06 _cell.length_a 84.852 _cell.length_b 64.915 _cell.length_c 71.174 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 169.704 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 5I06 _atom_sites.fract_transf_matrix[1][1] 0.011785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 E89 A 1 402 0 E89 EMF . D 4 GOL A 1 403 1 GOL GOL . E 4 GOL A 1 404 2 GOL GOL . F 4 GOL A 1 405 4 GOL GOL . G 5 EDO A 1 406 1 EDO EDO . H 6 PGE A 1 407 1 PGE PGE . I 7 HOH A 1 501 219 HOH HOH . I 7 HOH A 2 502 279 HOH HOH . I 7 HOH A 3 503 236 HOH HOH . I 7 HOH A 4 504 129 HOH HOH . I 7 HOH A 5 505 355 HOH HOH . I 7 HOH A 6 506 294 HOH HOH . I 7 HOH A 7 507 75 HOH HOH . I 7 HOH A 8 508 413 HOH HOH . I 7 HOH A 9 509 47 HOH HOH . I 7 HOH A 10 510 403 HOH HOH . I 7 HOH A 11 511 27 HOH HOH . I 7 HOH A 12 512 90 HOH HOH . I 7 HOH A 13 513 112 HOH HOH . I 7 HOH A 14 514 48 HOH HOH . I 7 HOH A 15 515 104 HOH HOH . I 7 HOH A 16 516 200 HOH HOH . I 7 HOH A 17 517 120 HOH HOH . I 7 HOH A 18 518 40 HOH HOH . I 7 HOH A 19 519 168 HOH HOH . I 7 HOH A 20 520 241 HOH HOH . I 7 HOH A 21 521 358 HOH HOH . I 7 HOH A 22 522 56 HOH HOH . I 7 HOH A 23 523 12 HOH HOH . I 7 HOH A 24 524 20 HOH HOH . I 7 HOH A 25 525 88 HOH HOH . I 7 HOH A 26 526 228 HOH HOH . I 7 HOH A 27 527 42 HOH HOH . I 7 HOH A 28 528 248 HOH HOH . I 7 HOH A 29 529 124 HOH HOH . I 7 HOH A 30 530 81 HOH HOH . I 7 HOH A 31 531 70 HOH HOH . I 7 HOH A 32 532 92 HOH HOH . I 7 HOH A 33 533 58 HOH HOH . I 7 HOH A 34 534 204 HOH HOH . I 7 HOH A 35 535 17 HOH HOH . I 7 HOH A 36 536 72 HOH HOH . I 7 HOH A 37 537 339 HOH HOH . I 7 HOH A 38 538 35 HOH HOH . I 7 HOH A 39 539 46 HOH HOH . I 7 HOH A 40 540 31 HOH HOH . I 7 HOH A 41 541 239 HOH HOH . I 7 HOH A 42 542 76 HOH HOH . I 7 HOH A 43 543 44 HOH HOH . I 7 HOH A 44 544 116 HOH HOH . I 7 HOH A 45 545 79 HOH HOH . I 7 HOH A 46 546 143 HOH HOH . I 7 HOH A 47 547 117 HOH HOH . I 7 HOH A 48 548 108 HOH HOH . I 7 HOH A 49 549 158 HOH HOH . I 7 HOH A 50 550 53 HOH HOH . I 7 HOH A 51 551 123 HOH HOH . I 7 HOH A 52 552 28 HOH HOH . I 7 HOH A 53 553 139 HOH HOH . I 7 HOH A 54 554 5 HOH HOH . I 7 HOH A 55 555 84 HOH HOH . I 7 HOH A 56 556 150 HOH HOH . I 7 HOH A 57 557 62 HOH HOH . I 7 HOH A 58 558 9 HOH HOH . I 7 HOH A 59 559 49 HOH HOH . I 7 HOH A 60 560 102 HOH HOH . I 7 HOH A 61 561 146 HOH HOH . I 7 HOH A 62 562 132 HOH HOH . I 7 HOH A 63 563 140 HOH HOH . I 7 HOH A 64 564 57 HOH HOH . I 7 HOH A 65 565 3 HOH HOH . I 7 HOH A 66 566 164 HOH HOH . I 7 HOH A 67 567 41 HOH HOH . I 7 HOH A 68 568 22 HOH HOH . I 7 HOH A 69 569 103 HOH HOH . I 7 HOH A 70 570 55 HOH HOH . I 7 HOH A 71 571 45 HOH HOH . I 7 HOH A 72 572 67 HOH HOH . I 7 HOH A 73 573 65 HOH HOH . I 7 HOH A 74 574 321 HOH HOH . I 7 HOH A 75 575 141 HOH HOH . I 7 HOH A 76 576 50 HOH HOH . I 7 HOH A 77 577 23 HOH HOH . I 7 HOH A 78 578 80 HOH HOH . I 7 HOH A 79 579 19 HOH HOH . I 7 HOH A 80 580 25 HOH HOH . I 7 HOH A 81 581 10 HOH HOH . I 7 HOH A 82 582 43 HOH HOH . I 7 HOH A 83 583 11 HOH HOH . I 7 HOH A 84 584 202 HOH HOH . I 7 HOH A 85 585 18 HOH HOH . I 7 HOH A 86 586 138 HOH HOH . I 7 HOH A 87 587 238 HOH HOH . I 7 HOH A 88 588 201 HOH HOH . I 7 HOH A 89 589 161 HOH HOH . I 7 HOH A 90 590 100 HOH HOH . I 7 HOH A 91 591 21 HOH HOH . I 7 HOH A 92 592 26 HOH HOH . I 7 HOH A 93 593 107 HOH HOH . I 7 HOH A 94 594 14 HOH HOH . I 7 HOH A 95 595 85 HOH HOH . I 7 HOH A 96 596 34 HOH HOH . I 7 HOH A 97 597 52 HOH HOH . I 7 HOH A 98 598 122 HOH HOH . I 7 HOH A 99 599 2 HOH HOH . I 7 HOH A 100 600 142 HOH HOH . I 7 HOH A 101 601 118 HOH HOH . I 7 HOH A 102 602 15 HOH HOH . I 7 HOH A 103 603 336 HOH HOH . I 7 HOH A 104 604 252 HOH HOH . I 7 HOH A 105 605 167 HOH HOH . I 7 HOH A 106 606 32 HOH HOH . I 7 HOH A 107 607 136 HOH HOH . I 7 HOH A 108 608 99 HOH HOH . I 7 HOH A 109 609 95 HOH HOH . I 7 HOH A 110 610 163 HOH HOH . I 7 HOH A 111 611 227 HOH HOH . I 7 HOH A 112 612 240 HOH HOH . I 7 HOH A 113 613 295 HOH HOH . I 7 HOH A 114 614 7 HOH HOH . I 7 HOH A 115 615 71 HOH HOH . I 7 HOH A 116 616 8 HOH HOH . I 7 HOH A 117 617 187 HOH HOH . I 7 HOH A 118 618 316 HOH HOH . I 7 HOH A 119 619 54 HOH HOH . I 7 HOH A 120 620 91 HOH HOH . I 7 HOH A 121 621 77 HOH HOH . I 7 HOH A 122 622 69 HOH HOH . I 7 HOH A 123 623 82 HOH HOH . I 7 HOH A 124 624 73 HOH HOH . I 7 HOH A 125 625 101 HOH HOH . I 7 HOH A 126 626 128 HOH HOH . I 7 HOH A 127 627 78 HOH HOH . I 7 HOH A 128 628 37 HOH HOH . I 7 HOH A 129 629 97 HOH HOH . I 7 HOH A 130 630 29 HOH HOH . I 7 HOH A 131 631 110 HOH HOH . I 7 HOH A 132 632 39 HOH HOH . I 7 HOH A 133 633 6 HOH HOH . I 7 HOH A 134 634 121 HOH HOH . I 7 HOH A 135 635 380 HOH HOH . I 7 HOH A 136 636 59 HOH HOH . I 7 HOH A 137 637 51 HOH HOH . I 7 HOH A 138 638 259 HOH HOH . I 7 HOH A 139 639 4 HOH HOH . I 7 HOH A 140 640 190 HOH HOH . I 7 HOH A 141 641 155 HOH HOH . I 7 HOH A 142 642 199 HOH HOH . I 7 HOH A 143 643 16 HOH HOH . I 7 HOH A 144 644 36 HOH HOH . I 7 HOH A 145 645 247 HOH HOH . I 7 HOH A 146 646 242 HOH HOH . I 7 HOH A 147 647 176 HOH HOH . I 7 HOH A 148 648 74 HOH HOH . I 7 HOH A 149 649 159 HOH HOH . I 7 HOH A 150 650 61 HOH HOH . I 7 HOH A 151 651 149 HOH HOH . I 7 HOH A 152 652 93 HOH HOH . I 7 HOH A 153 653 63 HOH HOH . I 7 HOH A 154 654 182 HOH HOH . I 7 HOH A 155 655 257 HOH HOH . I 7 HOH A 156 656 225 HOH HOH . I 7 HOH A 157 657 224 HOH HOH . I 7 HOH A 158 658 348 HOH HOH . I 7 HOH A 159 659 38 HOH HOH . I 7 HOH A 160 660 196 HOH HOH . I 7 HOH A 161 661 160 HOH HOH . I 7 HOH A 162 662 322 HOH HOH . I 7 HOH A 163 663 212 HOH HOH . I 7 HOH A 164 664 209 HOH HOH . I 7 HOH A 165 665 283 HOH HOH . I 7 HOH A 166 666 106 HOH HOH . I 7 HOH A 167 667 235 HOH HOH . I 7 HOH A 168 668 125 HOH HOH . I 7 HOH A 169 669 296 HOH HOH . I 7 HOH A 170 670 270 HOH HOH . I 7 HOH A 171 671 362 HOH HOH . I 7 HOH A 172 672 319 HOH HOH . I 7 HOH A 173 673 385 HOH HOH . I 7 HOH A 174 674 60 HOH HOH . I 7 HOH A 175 675 147 HOH HOH . I 7 HOH A 176 676 130 HOH HOH . I 7 HOH A 177 677 135 HOH HOH . I 7 HOH A 178 678 427 HOH HOH . I 7 HOH A 179 679 87 HOH HOH . I 7 HOH A 180 680 207 HOH HOH . I 7 HOH A 181 681 410 HOH HOH . I 7 HOH A 182 682 114 HOH HOH . I 7 HOH A 183 683 251 HOH HOH . I 7 HOH A 184 684 191 HOH HOH . I 7 HOH A 185 685 133 HOH HOH . I 7 HOH A 186 686 432 HOH HOH . I 7 HOH A 187 687 261 HOH HOH . I 7 HOH A 188 688 105 HOH HOH . I 7 HOH A 189 689 311 HOH HOH . I 7 HOH A 190 690 151 HOH HOH . I 7 HOH A 191 691 284 HOH HOH . I 7 HOH A 192 692 33 HOH HOH . I 7 HOH A 193 693 137 HOH HOH . I 7 HOH A 194 694 30 HOH HOH . I 7 HOH A 195 695 154 HOH HOH . I 7 HOH A 196 696 387 HOH HOH . I 7 HOH A 197 697 24 HOH HOH . I 7 HOH A 198 698 272 HOH HOH . I 7 HOH A 199 699 64 HOH HOH . I 7 HOH A 200 700 245 HOH HOH . I 7 HOH A 201 701 195 HOH HOH . I 7 HOH A 202 702 345 HOH HOH . I 7 HOH A 203 703 208 HOH HOH . I 7 HOH A 204 704 173 HOH HOH . I 7 HOH A 205 705 297 HOH HOH . I 7 HOH A 206 706 293 HOH HOH . I 7 HOH A 207 707 211 HOH HOH . I 7 HOH A 208 708 66 HOH HOH . I 7 HOH A 209 709 13 HOH HOH . I 7 HOH A 210 710 113 HOH HOH . I 7 HOH A 211 711 174 HOH HOH . I 7 HOH A 212 712 126 HOH HOH . I 7 HOH A 213 713 327 HOH HOH . I 7 HOH A 214 714 180 HOH HOH . I 7 HOH A 215 715 165 HOH HOH . I 7 HOH A 216 716 244 HOH HOH . I 7 HOH A 217 717 378 HOH HOH . I 7 HOH A 218 718 271 HOH HOH . I 7 HOH A 219 719 153 HOH HOH . I 7 HOH A 220 720 303 HOH HOH . I 7 HOH A 221 721 232 HOH HOH . I 7 HOH A 222 722 162 HOH HOH . I 7 HOH A 223 723 285 HOH HOH . I 7 HOH A 224 724 365 HOH HOH . I 7 HOH A 225 725 216 HOH HOH . I 7 HOH A 226 726 289 HOH HOH . I 7 HOH A 227 727 416 HOH HOH . I 7 HOH A 228 728 292 HOH HOH . I 7 HOH A 229 729 96 HOH HOH . I 7 HOH A 230 730 183 HOH HOH . I 7 HOH A 231 731 363 HOH HOH . I 7 HOH A 232 732 425 HOH HOH . I 7 HOH A 233 733 371 HOH HOH . I 7 HOH A 234 734 166 HOH HOH . I 7 HOH A 235 735 192 HOH HOH . I 7 HOH A 236 736 134 HOH HOH . I 7 HOH A 237 737 98 HOH HOH . I 7 HOH A 238 738 305 HOH HOH . I 7 HOH A 239 739 288 HOH HOH . I 7 HOH A 240 740 353 HOH HOH . I 7 HOH A 241 741 313 HOH HOH . I 7 HOH A 242 742 275 HOH HOH . I 7 HOH A 243 743 298 HOH HOH . I 7 HOH A 244 744 390 HOH HOH . I 7 HOH A 245 745 215 HOH HOH . I 7 HOH A 246 746 210 HOH HOH . I 7 HOH A 247 747 171 HOH HOH . I 7 HOH A 248 748 291 HOH HOH . I 7 HOH A 249 749 419 HOH HOH . I 7 HOH A 250 750 83 HOH HOH . I 7 HOH A 251 751 282 HOH HOH . I 7 HOH A 252 752 206 HOH HOH . I 7 HOH A 253 753 148 HOH HOH . I 7 HOH A 254 754 144 HOH HOH . I 7 HOH A 255 755 157 HOH HOH . I 7 HOH A 256 756 299 HOH HOH . I 7 HOH A 257 757 356 HOH HOH . I 7 HOH A 258 758 389 HOH HOH . I 7 HOH A 259 759 318 HOH HOH . I 7 HOH A 260 760 109 HOH HOH . I 7 HOH A 261 761 119 HOH HOH . I 7 HOH A 262 762 354 HOH HOH . I 7 HOH A 263 763 152 HOH HOH . I 7 HOH A 264 764 145 HOH HOH . I 7 HOH A 265 765 172 HOH HOH . I 7 HOH A 266 766 360 HOH HOH . I 7 HOH A 267 767 179 HOH HOH . I 7 HOH A 268 768 188 HOH HOH . I 7 HOH A 269 769 264 HOH HOH . I 7 HOH A 270 770 175 HOH HOH . I 7 HOH A 271 771 374 HOH HOH . I 7 HOH A 272 772 328 HOH HOH . I 7 HOH A 273 773 434 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 86.016 2.625 11.829 1 41.87 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 85.532 1.864 10.743 1 42.77 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 86.081 4.093 11.431 1 41.33 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 87.138 4.277 10.51 1 39.5 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 84.757 4.513 10.801 1 40.79 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 84.876 5.8 10.234 1 39.95 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #