data_5I0N # _model_server_result.job_id 7LAktbGlOkxuhmEWA7TMVw _model_server_result.datetime_utc '2024-11-05 14:49:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5I0N # _exptl.entry_id 5I0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I0N _cell.length_a 78.882 _cell.length_b 102.028 _cell.length_c 78.929 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 401 A ASN 313 1_555 D CA CA . A CA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A OD2 ASP 434 A ASP 346 1_555 D CA CA . A CA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 A OD1 ASP 434 A ASP 346 1_555 E CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc4 A OD2 ASP 434 A ASP 346 1_555 E CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 B O2G ATP . A ATP 1201 1_555 D CA CA . A CA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B O3G ATP . A ATP 1201 1_555 D CA CA . A CA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc7 B O1A ATP . A ATP 1201 1_555 D CA CA . A CA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc8 B O2G ATP . A ATP 1201 1_555 E CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc9 B O2B ATP . A ATP 1201 1_555 E CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc10 D CA CA . A CA 1203 1_555 F O HOH . A HOH 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc11 D CA CA . A CA 1203 1_555 F O HOH . A HOH 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc12 E CA CA . A CA 1204 1_555 F O HOH . A HOH 1354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc13 E CA CA . A CA 1204 1_555 F O HOH . A HOH 1478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc14 E CA CA . A CA 1204 1_555 F O HOH . A HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5I0N _atom_sites.fract_transf_matrix[1][1] 0.012677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1201 1 ATP ATP . C 2 ATP A 1 1202 2 ATP ATP . D 3 CA A 1 1203 1 CA CA . E 3 CA A 1 1204 2 CA CA . F 4 HOH A 1 1301 157 HOH HOH . F 4 HOH A 2 1302 182 HOH HOH . F 4 HOH A 3 1303 174 HOH HOH . F 4 HOH A 4 1304 198 HOH HOH . F 4 HOH A 5 1305 158 HOH HOH . F 4 HOH A 6 1306 206 HOH HOH . F 4 HOH A 7 1307 205 HOH HOH . F 4 HOH A 8 1308 199 HOH HOH . F 4 HOH A 9 1309 185 HOH HOH . F 4 HOH A 10 1310 119 HOH HOH . F 4 HOH A 11 1311 134 HOH HOH . F 4 HOH A 12 1312 143 HOH HOH . F 4 HOH A 13 1313 183 HOH HOH . F 4 HOH A 14 1314 175 HOH HOH . F 4 HOH A 15 1315 169 HOH HOH . F 4 HOH A 16 1316 155 HOH HOH . F 4 HOH A 17 1317 195 HOH HOH . F 4 HOH A 18 1318 209 HOH HOH . F 4 HOH A 19 1319 167 HOH HOH . F 4 HOH A 20 1320 150 HOH HOH . F 4 HOH A 21 1321 118 HOH HOH . F 4 HOH A 22 1322 2 HOH HOH . F 4 HOH A 23 1323 95 HOH HOH . F 4 HOH A 24 1324 4 HOH HOH . F 4 HOH A 25 1325 63 HOH HOH . F 4 HOH A 26 1326 217 HOH HOH . F 4 HOH A 27 1327 86 HOH HOH . F 4 HOH A 28 1328 10 HOH HOH . F 4 HOH A 29 1329 148 HOH HOH . F 4 HOH A 30 1330 168 HOH HOH . F 4 HOH A 31 1331 215 HOH HOH . F 4 HOH A 32 1332 131 HOH HOH . F 4 HOH A 33 1333 196 HOH HOH . F 4 HOH A 34 1334 165 HOH HOH . F 4 HOH A 35 1335 166 HOH HOH . F 4 HOH A 36 1336 193 HOH HOH . F 4 HOH A 37 1337 116 HOH HOH . F 4 HOH A 38 1338 213 HOH HOH . F 4 HOH A 39 1339 136 HOH HOH . F 4 HOH A 40 1340 85 HOH HOH . F 4 HOH A 41 1341 200 HOH HOH . F 4 HOH A 42 1342 170 HOH HOH . F 4 HOH A 43 1343 35 HOH HOH . F 4 HOH A 44 1344 212 HOH HOH . F 4 HOH A 45 1345 138 HOH HOH . F 4 HOH A 46 1346 34 HOH HOH . F 4 HOH A 47 1347 129 HOH HOH . F 4 HOH A 48 1348 98 HOH HOH . F 4 HOH A 49 1349 13 HOH HOH . F 4 HOH A 50 1350 172 HOH HOH . F 4 HOH A 51 1351 96 HOH HOH . F 4 HOH A 52 1352 219 HOH HOH . F 4 HOH A 53 1353 78 HOH HOH . F 4 HOH A 54 1354 173 HOH HOH . F 4 HOH A 55 1355 54 HOH HOH . F 4 HOH A 56 1356 41 HOH HOH . F 4 HOH A 57 1357 180 HOH HOH . F 4 HOH A 58 1358 103 HOH HOH . F 4 HOH A 59 1359 191 HOH HOH . F 4 HOH A 60 1360 144 HOH HOH . F 4 HOH A 61 1361 1 HOH HOH . F 4 HOH A 62 1362 159 HOH HOH . F 4 HOH A 63 1363 14 HOH HOH . F 4 HOH A 64 1364 37 HOH HOH . F 4 HOH A 65 1365 142 HOH HOH . F 4 HOH A 66 1366 121 HOH HOH . F 4 HOH A 67 1367 16 HOH HOH . F 4 HOH A 68 1368 11 HOH HOH . F 4 HOH A 69 1369 187 HOH HOH . F 4 HOH A 70 1370 26 HOH HOH . F 4 HOH A 71 1371 84 HOH HOH . F 4 HOH A 72 1372 88 HOH HOH . F 4 HOH A 73 1373 106 HOH HOH . F 4 HOH A 74 1374 76 HOH HOH . F 4 HOH A 75 1375 27 HOH HOH . F 4 HOH A 76 1376 32 HOH HOH . F 4 HOH A 77 1377 97 HOH HOH . F 4 HOH A 78 1378 21 HOH HOH . F 4 HOH A 79 1379 107 HOH HOH . F 4 HOH A 80 1380 29 HOH HOH . F 4 HOH A 81 1381 56 HOH HOH . F 4 HOH A 82 1382 181 HOH HOH . F 4 HOH A 83 1383 23 HOH HOH . F 4 HOH A 84 1384 156 HOH HOH . F 4 HOH A 85 1385 49 HOH HOH . F 4 HOH A 86 1386 111 HOH HOH . F 4 HOH A 87 1387 45 HOH HOH . F 4 HOH A 88 1388 17 HOH HOH . F 4 HOH A 89 1389 8 HOH HOH . F 4 HOH A 90 1390 24 HOH HOH . F 4 HOH A 91 1391 60 HOH HOH . F 4 HOH A 92 1392 15 HOH HOH . F 4 HOH A 93 1393 154 HOH HOH . F 4 HOH A 94 1394 124 HOH HOH . F 4 HOH A 95 1395 22 HOH HOH . F 4 HOH A 96 1396 44 HOH HOH . F 4 HOH A 97 1397 64 HOH HOH . F 4 HOH A 98 1398 43 HOH HOH . F 4 HOH A 99 1399 139 HOH HOH . F 4 HOH A 100 1400 20 HOH HOH . F 4 HOH A 101 1401 42 HOH HOH . F 4 HOH A 102 1402 110 HOH HOH . F 4 HOH A 103 1403 186 HOH HOH . F 4 HOH A 104 1404 67 HOH HOH . F 4 HOH A 105 1405 47 HOH HOH . F 4 HOH A 106 1406 149 HOH HOH . F 4 HOH A 107 1407 83 HOH HOH . F 4 HOH A 108 1408 99 HOH HOH . F 4 HOH A 109 1409 93 HOH HOH . F 4 HOH A 110 1410 94 HOH HOH . F 4 HOH A 111 1411 7 HOH HOH . F 4 HOH A 112 1412 53 HOH HOH . F 4 HOH A 113 1413 30 HOH HOH . F 4 HOH A 114 1414 9 HOH HOH . F 4 HOH A 115 1415 202 HOH HOH . F 4 HOH A 116 1416 105 HOH HOH . F 4 HOH A 117 1417 163 HOH HOH . F 4 HOH A 118 1418 36 HOH HOH . F 4 HOH A 119 1419 132 HOH HOH . F 4 HOH A 120 1420 178 HOH HOH . F 4 HOH A 121 1421 90 HOH HOH . F 4 HOH A 122 1422 39 HOH HOH . F 4 HOH A 123 1423 125 HOH HOH . F 4 HOH A 124 1424 151 HOH HOH . F 4 HOH A 125 1425 74 HOH HOH . F 4 HOH A 126 1426 71 HOH HOH . F 4 HOH A 127 1427 55 HOH HOH . F 4 HOH A 128 1428 179 HOH HOH . F 4 HOH A 129 1429 50 HOH HOH . F 4 HOH A 130 1430 177 HOH HOH . F 4 HOH A 131 1431 104 HOH HOH . F 4 HOH A 132 1432 77 HOH HOH . F 4 HOH A 133 1433 102 HOH HOH . F 4 HOH A 134 1434 222 HOH HOH . F 4 HOH A 135 1435 152 HOH HOH . F 4 HOH A 136 1436 68 HOH HOH . F 4 HOH A 137 1437 194 HOH HOH . F 4 HOH A 138 1438 5 HOH HOH . F 4 HOH A 139 1439 147 HOH HOH . F 4 HOH A 140 1440 18 HOH HOH . F 4 HOH A 141 1441 141 HOH HOH . F 4 HOH A 142 1442 127 HOH HOH . F 4 HOH A 143 1443 115 HOH HOH . F 4 HOH A 144 1444 25 HOH HOH . F 4 HOH A 145 1445 221 HOH HOH . F 4 HOH A 146 1446 197 HOH HOH . F 4 HOH A 147 1447 79 HOH HOH . F 4 HOH A 148 1448 101 HOH HOH . F 4 HOH A 149 1449 6 HOH HOH . F 4 HOH A 150 1450 146 HOH HOH . F 4 HOH A 151 1451 75 HOH HOH . F 4 HOH A 152 1452 33 HOH HOH . F 4 HOH A 153 1453 220 HOH HOH . F 4 HOH A 154 1454 123 HOH HOH . F 4 HOH A 155 1455 126 HOH HOH . F 4 HOH A 156 1456 140 HOH HOH . F 4 HOH A 157 1457 19 HOH HOH . F 4 HOH A 158 1458 108 HOH HOH . F 4 HOH A 159 1459 82 HOH HOH . F 4 HOH A 160 1460 91 HOH HOH . F 4 HOH A 161 1461 192 HOH HOH . F 4 HOH A 162 1462 160 HOH HOH . F 4 HOH A 163 1463 72 HOH HOH . F 4 HOH A 164 1464 66 HOH HOH . F 4 HOH A 165 1465 31 HOH HOH . F 4 HOH A 166 1466 122 HOH HOH . F 4 HOH A 167 1467 51 HOH HOH . F 4 HOH A 168 1468 161 HOH HOH . F 4 HOH A 169 1469 214 HOH HOH . F 4 HOH A 170 1470 117 HOH HOH . F 4 HOH A 171 1471 112 HOH HOH . F 4 HOH A 172 1472 73 HOH HOH . F 4 HOH A 173 1473 80 HOH HOH . F 4 HOH A 174 1474 120 HOH HOH . F 4 HOH A 175 1475 109 HOH HOH . F 4 HOH A 176 1476 52 HOH HOH . F 4 HOH A 177 1477 40 HOH HOH . F 4 HOH A 178 1478 89 HOH HOH . F 4 HOH A 179 1479 113 HOH HOH . F 4 HOH A 180 1480 100 HOH HOH . F 4 HOH A 181 1481 162 HOH HOH . F 4 HOH A 182 1482 59 HOH HOH . F 4 HOH A 183 1483 216 HOH HOH . F 4 HOH A 184 1484 65 HOH HOH . F 4 HOH A 185 1485 135 HOH HOH . F 4 HOH A 186 1486 48 HOH HOH . F 4 HOH A 187 1487 133 HOH HOH . F 4 HOH A 188 1488 28 HOH HOH . F 4 HOH A 189 1489 207 HOH HOH . F 4 HOH A 190 1490 203 HOH HOH . F 4 HOH A 191 1491 190 HOH HOH . F 4 HOH A 192 1492 184 HOH HOH . F 4 HOH A 193 1493 210 HOH HOH . F 4 HOH A 194 1494 189 HOH HOH . F 4 HOH A 195 1495 114 HOH HOH . F 4 HOH A 196 1496 3 HOH HOH . F 4 HOH A 197 1497 38 HOH HOH . F 4 HOH A 198 1498 201 HOH HOH . F 4 HOH A 199 1499 211 HOH HOH . F 4 HOH A 200 1500 188 HOH HOH . F 4 HOH A 201 1501 164 HOH HOH . F 4 HOH A 202 1502 58 HOH HOH . F 4 HOH A 203 1503 12 HOH HOH . F 4 HOH A 204 1504 171 HOH HOH . F 4 HOH A 205 1505 62 HOH HOH . F 4 HOH A 206 1506 176 HOH HOH . F 4 HOH A 207 1507 46 HOH HOH . F 4 HOH A 208 1508 208 HOH HOH . F 4 HOH A 209 1509 145 HOH HOH . F 4 HOH A 210 1510 128 HOH HOH . F 4 HOH A 211 1511 61 HOH HOH . F 4 HOH A 212 1512 130 HOH HOH . F 4 HOH A 213 1513 204 HOH HOH . F 4 HOH A 214 1514 153 HOH HOH . F 4 HOH A 215 1515 57 HOH HOH . F 4 HOH A 216 1516 92 HOH HOH . F 4 HOH A 217 1517 81 HOH HOH . F 4 HOH A 218 1518 87 HOH HOH . F 4 HOH A 219 1519 137 HOH HOH . F 4 HOH A 220 1520 70 HOH HOH . F 4 HOH A 221 1521 69 HOH HOH . F 4 HOH A 222 1522 218 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.523 _atom_site.Cartn_y 26.768 _atom_site.Cartn_z 7.984 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #