data_5I12
#
_model_server_result.job_id            cS_nggG7JXXzaqHo0L6Q9A 
_model_server_result.datetime_utc      '2024-11-27 08:05:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":308}' 
#
_entry.id    5I12 
#
_exptl.entry_id    5I12 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5I12 
_cell.length_a            39.56 
_cell.length_b            39.56 
_cell.length_c            163.55 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 19 A ASP 131 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc2 A O ASP 53 A ASP 165 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc3 A NE2 HIS 63 A HIS 175 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc4 A OD2 ASP 65 A ASP 177 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc5 A OD1 ASP 70 A ASP 182 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc6 A O GLY 71 A GLY 183 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 A O ASP 73 A ASP 185 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc8 A O LEU 75 A LEU 187 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc9 A NE2 HIS 78 A HIS 190 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc10 A O GLY 85 A GLY 197 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc11 A O GLN 87 A GLN 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc12 A OD1 ASP 89 A ASP 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc13 A ND1 HIS 91 A HIS 203 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc14 A OD2 ASP 93 A ASP 205 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc15 A O ASP 94 A ASP 206 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc16 A OD1 ASP 94 A ASP 206 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc17 A OE2 GLU 96 A GLU 208 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc18 A O GLU 96 A GLU 208 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc19 A NE2 HIS 114 A HIS 226 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc20 A NE2 HIS 118 A HIS 230 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc21 A NE2 HIS 124 A HIS 236 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc22 B ZN ZN . A ZN 301 1_555 G O98 H27 . A H27 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc23 E CA CA . A CA 304 1_555 K O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc24 E CA CA . A CA 304 1_555 K O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc25 F CA CA . A CA 305 1_555 K O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc26 F CA CA . A CA 305 1_555 K O HOH . A HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 70 n n 
S C1 DMS sing 71 n n 
S C2 DMS sing 72 n n 
C1 H11 DMS sing 73 n n 
C1 H12 DMS sing 74 n n 
C1 H13 DMS sing 75 n n 
C2 H21 DMS sing 76 n n 
C2 H22 DMS sing 77 n n 
C2 H23 DMS sing 78 n n 
#
_atom_sites.entry_id                     5I12 
_atom_sites.fract_transf_matrix[1][1]    0.025278 
_atom_sites.fract_transf_matrix[1][2]    0.014594 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029189 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006114 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 3 CA A 1 303 303 CA CA . 
E 3 CA A 1 304 304 CA CA . 
F 3 CA A 1 305 305 CA CA . 
G 4 H27 A 1 306 306 H27 H27 . 
H 5 EDO A 1 307 307 EDO EDO . 
I 6 DMS A 1 308 308 DMS DMS . 
J 7 GOL A 1 309 309 GOL GOL . 
K 8 HOH A 1 401 401 HOH HOH . 
K 8 HOH A 2 402 402 HOH HOH . 
K 8 HOH A 3 403 403 HOH HOH . 
K 8 HOH A 4 404 404 HOH HOH . 
K 8 HOH A 5 405 405 HOH HOH . 
K 8 HOH A 6 406 406 HOH HOH . 
K 8 HOH A 7 407 407 HOH HOH . 
K 8 HOH A 8 408 408 HOH HOH . 
K 8 HOH A 9 409 409 HOH HOH . 
K 8 HOH A 10 410 410 HOH HOH . 
K 8 HOH A 11 411 411 HOH HOH . 
K 8 HOH A 12 412 412 HOH HOH . 
K 8 HOH A 13 413 413 HOH HOH . 
K 8 HOH A 14 414 414 HOH HOH . 
K 8 HOH A 15 415 415 HOH HOH . 
K 8 HOH A 16 416 416 HOH HOH . 
K 8 HOH A 17 417 417 HOH HOH . 
K 8 HOH A 18 418 418 HOH HOH . 
K 8 HOH A 19 419 419 HOH HOH . 
K 8 HOH A 20 420 420 HOH HOH . 
K 8 HOH A 21 421 421 HOH HOH . 
K 8 HOH A 22 422 422 HOH HOH . 
K 8 HOH A 23 423 423 HOH HOH . 
K 8 HOH A 24 424 424 HOH HOH . 
K 8 HOH A 25 425 425 HOH HOH . 
K 8 HOH A 26 426 426 HOH HOH . 
K 8 HOH A 27 427 427 HOH HOH . 
K 8 HOH A 28 428 428 HOH HOH . 
K 8 HOH A 29 429 429 HOH HOH . 
K 8 HOH A 30 430 430 HOH HOH . 
K 8 HOH A 31 431 431 HOH HOH . 
K 8 HOH A 32 432 432 HOH HOH . 
K 8 HOH A 33 433 433 HOH HOH . 
K 8 HOH A 34 434 434 HOH HOH . 
K 8 HOH A 35 435 435 HOH HOH . 
K 8 HOH A 36 436 436 HOH HOH . 
K 8 HOH A 37 437 437 HOH HOH . 
K 8 HOH A 38 438 438 HOH HOH . 
K 8 HOH A 39 439 439 HOH HOH . 
K 8 HOH A 40 440 441 HOH HOH . 
K 8 HOH A 41 441 442 HOH HOH . 
K 8 HOH A 42 442 443 HOH HOH . 
K 8 HOH A 43 443 444 HOH HOH . 
K 8 HOH A 44 444 445 HOH HOH . 
K 8 HOH A 45 445 446 HOH HOH . 
K 8 HOH A 46 446 447 HOH HOH . 
K 8 HOH A 47 447 440 HOH HOH . 
K 8 HOH A 48 448 448 HOH HOH . 
K 8 HOH A 49 449 449 HOH HOH . 
K 8 HOH A 50 450 450 HOH HOH . 
K 8 HOH A 51 451 451 HOH HOH . 
K 8 HOH A 52 452 452 HOH HOH . 
K 8 HOH A 53 453 453 HOH HOH . 
K 8 HOH A 54 454 454 HOH HOH . 
K 8 HOH A 55 455 455 HOH HOH . 
K 8 HOH A 56 456 456 HOH HOH . 
K 8 HOH A 57 457 457 HOH HOH . 
K 8 HOH A 58 458 458 HOH HOH . 
K 8 HOH A 59 459 459 HOH HOH . 
K 8 HOH A 60 460 460 HOH HOH . 
K 8 HOH A 61 461 461 HOH HOH . 
K 8 HOH A 62 462 462 HOH HOH . 
K 8 HOH A 63 463 463 HOH HOH . 
K 8 HOH A 64 464 464 HOH HOH . 
K 8 HOH A 65 465 465 HOH HOH . 
K 8 HOH A 66 466 466 HOH HOH . 
K 8 HOH A 67 467 467 HOH HOH . 
K 8 HOH A 68 468 468 HOH HOH . 
K 8 HOH A 69 469 469 HOH HOH . 
K 8 HOH A 70 470 470 HOH HOH . 
K 8 HOH A 71 471 471 HOH HOH . 
K 8 HOH A 72 472 472 HOH HOH . 
K 8 HOH A 73 473 473 HOH HOH . 
K 8 HOH A 74 474 474 HOH HOH . 
K 8 HOH A 75 475 475 HOH HOH . 
K 8 HOH A 76 476 476 HOH HOH . 
K 8 HOH A 77 477 477 HOH HOH . 
K 8 HOH A 78 478 478 HOH HOH . 
K 8 HOH A 79 479 479 HOH HOH . 
K 8 HOH A 80 480 480 HOH HOH . 
K 8 HOH A 81 481 481 HOH HOH . 
K 8 HOH A 82 482 482 HOH HOH . 
K 8 HOH A 83 483 483 HOH HOH . 
K 8 HOH A 84 484 484 HOH HOH . 
K 8 HOH A 85 485 485 HOH HOH . 
K 8 HOH A 86 486 486 HOH HOH . 
K 8 HOH A 87 487 487 HOH HOH . 
K 8 HOH A 88 488 488 HOH HOH . 
K 8 HOH A 89 489 489 HOH HOH . 
K 8 HOH A 90 490 490 HOH HOH . 
K 8 HOH A 91 491 491 HOH HOH . 
K 8 HOH A 92 492 492 HOH HOH . 
K 8 HOH A 93 493 493 HOH HOH . 
K 8 HOH A 94 494 494 HOH HOH . 
K 8 HOH A 95 495 495 HOH HOH . 
K 8 HOH A 96 496 496 HOH HOH . 
K 8 HOH A 97 497 497 HOH HOH . 
K 8 HOH A 98 498 498 HOH HOH . 
K 8 HOH A 99 499 499 HOH HOH . 
K 8 HOH A 100 500 500 HOH HOH . 
K 8 HOH A 101 501 501 HOH HOH . 
K 8 HOH A 102 502 502 HOH HOH . 
K 8 HOH A 103 503 503 HOH HOH . 
K 8 HOH A 104 504 504 HOH HOH . 
K 8 HOH A 105 505 505 HOH HOH . 
K 8 HOH A 106 506 506 HOH HOH . 
K 8 HOH A 107 507 507 HOH HOH . 
K 8 HOH A 108 508 508 HOH HOH . 
K 8 HOH A 109 509 509 HOH HOH . 
K 8 HOH A 110 510 510 HOH HOH . 
K 8 HOH A 111 511 511 HOH HOH . 
K 8 HOH A 112 512 512 HOH HOH . 
K 8 HOH A 113 513 513 HOH HOH . 
K 8 HOH A 114 514 514 HOH HOH . 
K 8 HOH A 115 515 515 HOH HOH . 
K 8 HOH A 116 516 516 HOH HOH . 
K 8 HOH A 117 517 517 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . I 6 24.514 -19.356 11.182 1 102.21 ? S DMS 308 A 1 
HETATM 2 O O DMS . . . I 6 24.617 -17.931 10.748 1 102.76 ? O DMS 308 A 1 
HETATM 3 C C1 DMS . . . I 6 23.186 -20.149 10.238 1 39.71 ? C1 DMS 308 A 1 
HETATM 4 C C2 DMS . . . I 6 25.947 -20.269 10.55 1 62.72 ? C2 DMS 308 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#