data_5I1J # _model_server_result.job_id bvEdZhzJKxHCFIiuEfGwjA _model_server_result.datetime_utc '2024-11-21 23:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 5I1J # _exptl.entry_id 5I1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I1J _cell.length_a 64.14 _cell.length_b 73.83 _cell.length_c 102.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 214 L CYS 214 1_555 B SG CYS 222 H CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 B SG CYS 146 H CYS 146 1_555 B SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5I1J _atom_sites.fract_transf_matrix[1][1] 0.015591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 901 901 GOL GOL . D 4 HOH L 1 1001 32 HOH HOH . D 4 HOH L 2 1002 31 HOH HOH . D 4 HOH L 3 1003 88 HOH HOH . D 4 HOH L 4 1004 167 HOH HOH . D 4 HOH L 5 1005 144 HOH HOH . D 4 HOH L 6 1006 26 HOH HOH . D 4 HOH L 7 1007 79 HOH HOH . D 4 HOH L 8 1008 51 HOH HOH . D 4 HOH L 9 1009 112 HOH HOH . D 4 HOH L 10 1010 44 HOH HOH . D 4 HOH L 11 1011 117 HOH HOH . D 4 HOH L 12 1012 17 HOH HOH . D 4 HOH L 13 1013 102 HOH HOH . D 4 HOH L 14 1014 52 HOH HOH . D 4 HOH L 15 1015 34 HOH HOH . D 4 HOH L 16 1016 87 HOH HOH . D 4 HOH L 17 1017 73 HOH HOH . D 4 HOH L 18 1018 2 HOH HOH . D 4 HOH L 19 1019 35 HOH HOH . D 4 HOH L 20 1020 127 HOH HOH . D 4 HOH L 21 1021 153 HOH HOH . D 4 HOH L 22 1022 10 HOH HOH . D 4 HOH L 23 1023 194 HOH HOH . D 4 HOH L 24 1024 101 HOH HOH . D 4 HOH L 25 1025 5 HOH HOH . D 4 HOH L 26 1026 62 HOH HOH . D 4 HOH L 27 1027 20 HOH HOH . D 4 HOH L 28 1028 158 HOH HOH . D 4 HOH L 29 1029 48 HOH HOH . D 4 HOH L 30 1030 54 HOH HOH . D 4 HOH L 31 1031 13 HOH HOH . D 4 HOH L 32 1032 19 HOH HOH . D 4 HOH L 33 1033 106 HOH HOH . D 4 HOH L 34 1034 163 HOH HOH . D 4 HOH L 35 1035 119 HOH HOH . D 4 HOH L 36 1036 23 HOH HOH . D 4 HOH L 37 1037 42 HOH HOH . D 4 HOH L 38 1038 24 HOH HOH . D 4 HOH L 39 1039 84 HOH HOH . D 4 HOH L 40 1040 59 HOH HOH . D 4 HOH L 41 1041 16 HOH HOH . D 4 HOH L 42 1042 154 HOH HOH . D 4 HOH L 43 1043 3 HOH HOH . D 4 HOH L 44 1044 92 HOH HOH . D 4 HOH L 45 1045 166 HOH HOH . D 4 HOH L 46 1046 174 HOH HOH . D 4 HOH L 47 1047 67 HOH HOH . D 4 HOH L 48 1048 71 HOH HOH . D 4 HOH L 49 1049 56 HOH HOH . D 4 HOH L 50 1050 85 HOH HOH . D 4 HOH L 51 1051 43 HOH HOH . D 4 HOH L 52 1052 86 HOH HOH . D 4 HOH L 53 1053 185 HOH HOH . D 4 HOH L 54 1054 77 HOH HOH . D 4 HOH L 55 1055 146 HOH HOH . D 4 HOH L 56 1056 100 HOH HOH . D 4 HOH L 57 1057 98 HOH HOH . D 4 HOH L 58 1058 28 HOH HOH . D 4 HOH L 59 1059 121 HOH HOH . D 4 HOH L 60 1060 172 HOH HOH . D 4 HOH L 61 1061 39 HOH HOH . D 4 HOH L 62 1062 80 HOH HOH . D 4 HOH L 63 1063 152 HOH HOH . D 4 HOH L 64 1064 179 HOH HOH . D 4 HOH L 65 1065 45 HOH HOH . D 4 HOH L 66 1066 134 HOH HOH . D 4 HOH L 67 1067 25 HOH HOH . D 4 HOH L 68 1068 21 HOH HOH . D 4 HOH L 69 1069 109 HOH HOH . D 4 HOH L 70 1070 137 HOH HOH . D 4 HOH L 71 1071 173 HOH HOH . D 4 HOH L 72 1072 129 HOH HOH . D 4 HOH L 73 1073 70 HOH HOH . D 4 HOH L 74 1074 74 HOH HOH . D 4 HOH L 75 1075 47 HOH HOH . D 4 HOH L 76 1076 149 HOH HOH . D 4 HOH L 77 1077 181 HOH HOH . D 4 HOH L 78 1078 11 HOH HOH . D 4 HOH L 79 1079 168 HOH HOH . D 4 HOH L 80 1080 196 HOH HOH . D 4 HOH L 81 1081 27 HOH HOH . D 4 HOH L 82 1082 122 HOH HOH . D 4 HOH L 83 1083 114 HOH HOH . D 4 HOH L 84 1084 135 HOH HOH . D 4 HOH L 85 1085 61 HOH HOH . D 4 HOH L 86 1086 162 HOH HOH . D 4 HOH L 87 1087 193 HOH HOH . D 4 HOH L 88 1088 170 HOH HOH . D 4 HOH L 89 1089 4 HOH HOH . D 4 HOH L 90 1090 65 HOH HOH . D 4 HOH L 91 1091 116 HOH HOH . D 4 HOH L 92 1092 190 HOH HOH . D 4 HOH L 93 1093 184 HOH HOH . D 4 HOH L 94 1094 192 HOH HOH . D 4 HOH L 95 1095 93 HOH HOH . D 4 HOH L 96 1096 124 HOH HOH . D 4 HOH L 97 1097 58 HOH HOH . D 4 HOH L 98 1098 148 HOH HOH . D 4 HOH L 99 1099 120 HOH HOH . D 4 HOH L 100 1100 142 HOH HOH . D 4 HOH L 101 1101 136 HOH HOH . D 4 HOH L 102 1102 105 HOH HOH . D 4 HOH L 103 1103 186 HOH HOH . D 4 HOH L 104 1104 97 HOH HOH . D 4 HOH L 105 1105 183 HOH HOH . D 4 HOH L 106 1106 195 HOH HOH . D 4 HOH L 107 1107 82 HOH HOH . D 4 HOH L 108 1108 63 HOH HOH . D 4 HOH L 109 1109 111 HOH HOH . D 4 HOH L 110 1110 83 HOH HOH . D 4 HOH L 111 1111 12 HOH HOH . D 4 HOH L 112 1112 141 HOH HOH . D 4 HOH L 113 1113 55 HOH HOH . D 4 HOH L 114 1114 89 HOH HOH . D 4 HOH L 115 1115 155 HOH HOH . D 4 HOH L 116 1116 157 HOH HOH . E 4 HOH H 1 301 33 HOH HOH . E 4 HOH H 2 302 75 HOH HOH . E 4 HOH H 3 303 22 HOH HOH . E 4 HOH H 4 304 107 HOH HOH . E 4 HOH H 5 305 8 HOH HOH . E 4 HOH H 6 306 18 HOH HOH . E 4 HOH H 7 307 171 HOH HOH . E 4 HOH H 8 308 7 HOH HOH . E 4 HOH H 9 309 110 HOH HOH . E 4 HOH H 10 310 76 HOH HOH . E 4 HOH H 11 311 9 HOH HOH . E 4 HOH H 12 312 126 HOH HOH . E 4 HOH H 13 313 41 HOH HOH . E 4 HOH H 14 314 15 HOH HOH . E 4 HOH H 15 315 169 HOH HOH . E 4 HOH H 16 316 50 HOH HOH . E 4 HOH H 17 317 138 HOH HOH . E 4 HOH H 18 318 147 HOH HOH . E 4 HOH H 19 319 49 HOH HOH . E 4 HOH H 20 320 160 HOH HOH . E 4 HOH H 21 321 81 HOH HOH . E 4 HOH H 22 322 68 HOH HOH . E 4 HOH H 23 323 94 HOH HOH . E 4 HOH H 24 324 176 HOH HOH . E 4 HOH H 25 325 115 HOH HOH . E 4 HOH H 26 326 40 HOH HOH . E 4 HOH H 27 327 60 HOH HOH . E 4 HOH H 28 328 191 HOH HOH . E 4 HOH H 29 329 133 HOH HOH . E 4 HOH H 30 330 37 HOH HOH . E 4 HOH H 31 331 180 HOH HOH . E 4 HOH H 32 332 187 HOH HOH . E 4 HOH H 33 333 38 HOH HOH . E 4 HOH H 34 334 132 HOH HOH . E 4 HOH H 35 335 57 HOH HOH . E 4 HOH H 36 336 145 HOH HOH . E 4 HOH H 37 337 46 HOH HOH . E 4 HOH H 38 338 123 HOH HOH . E 4 HOH H 39 339 36 HOH HOH . E 4 HOH H 40 340 189 HOH HOH . E 4 HOH H 41 341 29 HOH HOH . E 4 HOH H 42 342 64 HOH HOH . E 4 HOH H 43 343 53 HOH HOH . E 4 HOH H 44 344 151 HOH HOH . E 4 HOH H 45 345 30 HOH HOH . E 4 HOH H 46 346 139 HOH HOH . E 4 HOH H 47 347 90 HOH HOH . E 4 HOH H 48 348 14 HOH HOH . E 4 HOH H 49 349 1 HOH HOH . E 4 HOH H 50 350 104 HOH HOH . E 4 HOH H 51 351 113 HOH HOH . E 4 HOH H 52 352 161 HOH HOH . E 4 HOH H 53 353 6 HOH HOH . E 4 HOH H 54 354 131 HOH HOH . E 4 HOH H 55 355 143 HOH HOH . E 4 HOH H 56 356 188 HOH HOH . E 4 HOH H 57 357 72 HOH HOH . E 4 HOH H 58 358 175 HOH HOH . E 4 HOH H 59 359 91 HOH HOH . E 4 HOH H 60 360 177 HOH HOH . E 4 HOH H 61 361 69 HOH HOH . E 4 HOH H 62 362 118 HOH HOH . E 4 HOH H 63 363 99 HOH HOH . E 4 HOH H 64 364 78 HOH HOH . E 4 HOH H 65 365 164 HOH HOH . E 4 HOH H 66 366 182 HOH HOH . E 4 HOH H 67 367 108 HOH HOH . E 4 HOH H 68 368 66 HOH HOH . E 4 HOH H 69 369 165 HOH HOH . E 4 HOH H 70 370 96 HOH HOH . E 4 HOH H 71 371 128 HOH HOH . E 4 HOH H 72 372 103 HOH HOH . E 4 HOH H 73 373 95 HOH HOH . E 4 HOH H 74 374 178 HOH HOH . E 4 HOH H 75 375 150 HOH HOH . E 4 HOH H 76 376 125 HOH HOH . E 4 HOH H 77 377 156 HOH HOH . E 4 HOH H 78 378 140 HOH HOH . E 4 HOH H 79 379 130 HOH HOH . E 4 HOH H 80 380 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 13.19 25.936 5.204 1 36.94 ? C1 GOL 901 L 1 HETATM 2 O O1 GOL . . . C 3 12.996 27.311 4.97 1 53.54 ? O1 GOL 901 L 1 HETATM 3 C C2 GOL . . . C 3 13.941 25.342 4.02 1 41.46 ? C2 GOL 901 L 1 HETATM 4 O O2 GOL . . . C 3 13.011 24.762 3.132 1 69.47 ? O2 GOL 901 L 1 HETATM 5 C C3 GOL . . . C 3 14.889 24.265 4.526 1 52.38 ? C3 GOL 901 L 1 HETATM 6 O O3 GOL . . . C 3 14.138 23.188 5.044 1 62.08 ? O3 GOL 901 L 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #