data_5I20
#
_model_server_result.job_id            M9qYlf6qaJTl6VgolfOUrQ 
_model_server_result.datetime_utc      '2024-11-21 14:46:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":304}' 
#
_entry.id    5I20 
#
_exptl.entry_id    5I20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    23 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.46 
_cell.angle_gamma         90 
_cell.entry_id            5I20 
_cell.length_a            105.84 
_cell.length_b            84.65 
_cell.length_c            112.25 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K 1 1 
B,L,M,N,O,P,EA 2 1 
C,Q,R,S,FA 3 1 
D,T,U,V,W,X,GA 4 1 
E,Y,Z,AA,BA,CA,DA,HA 5 1 
F 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 237 n n 
C10 C9 OLC doub 238 n n 
C10 C11 OLC sing 239 n n 
C9 C8 OLC sing 240 n n 
C17 C16 OLC sing 241 z n 
C11 C12 OLC sing 242 n n 
C8 C7 OLC sing 243 n n 
C24 C22 OLC sing 244 n n 
C24 O25 OLC sing 245 n n 
C16 C15 OLC sing 246 n n 
C12 C13 OLC sing 247 n n 
C7 C6 OLC sing 248 n n 
C15 C14 OLC sing 249 n n 
C13 C14 OLC sing 250 n n 
C6 C5 OLC sing 251 n n 
C5 C4 OLC sing 252 n n 
C4 C3 OLC sing 253 n n 
C3 C2 OLC sing 254 n n 
C2 C1 OLC sing 255 n n 
C21 C22 OLC sing 256 n n 
C21 O20 OLC sing 257 n n 
C1 O19 OLC doub 258 n n 
C1 O20 OLC sing 259 n n 
C22 O23 OLC sing 260 n n 
C18 H18 OLC sing 261 n n 
C18 H18A OLC sing 262 n n 
C18 H18B OLC sing 263 n n 
C10 H10 OLC sing 264 n n 
C9 H9 OLC sing 265 n n 
C17 H17 OLC sing 266 n n 
C17 H17A OLC sing 267 n n 
C11 H11 OLC sing 268 n n 
C11 H11A OLC sing 269 n n 
C8 H8 OLC sing 270 n n 
C8 H8A OLC sing 271 n n 
C24 H24 OLC sing 272 n n 
C24 H24A OLC sing 273 n n 
C16 H16 OLC sing 274 n n 
C16 H16A OLC sing 275 n n 
C12 H12 OLC sing 276 n n 
C12 H12A OLC sing 277 n n 
C7 H7 OLC sing 278 n n 
C7 H7A OLC sing 279 n n 
C15 H15 OLC sing 280 n n 
C15 H15A OLC sing 281 n n 
C13 H13 OLC sing 282 n n 
C13 H13A OLC sing 283 n n 
C6 H6 OLC sing 284 n n 
C6 H6A OLC sing 285 n n 
C14 H14 OLC sing 286 n n 
C14 H14A OLC sing 287 n n 
C5 H5 OLC sing 288 n n 
C5 H5A OLC sing 289 n n 
C4 H4 OLC sing 290 n n 
C4 H4A OLC sing 291 n n 
C3 H3 OLC sing 292 n n 
C3 H3A OLC sing 293 n n 
C2 H2 OLC sing 294 n n 
C2 H2A OLC sing 295 n n 
C21 H21 OLC sing 296 n n 
C21 H21A OLC sing 297 n n 
C22 H22 OLC sing 298 n n 
O25 HO25 OLC sing 299 n n 
O23 HO23 OLC sing 300 n n 
#
_atom_sites.entry_id                     5I20 
_atom_sites.fract_transf_matrix[1][1]    0.009448 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009392 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 OLC A 1 301 1 OLC OLC . 
H 2 OLC A 1 302 7 OLC OLC . 
I 2 OLC A 1 303 9 OLC OLC . 
J 2 OLC A 1 304 30 OLC OLC . 
K 3 SO4 A 1 305 1 SO4 SO4 . 
L 2 OLC B 1 301 4 OLC OLC . 
M 2 OLC B 1 302 8 OLC OLC . 
N 2 OLC B 1 303 10 OLC OLC . 
O 2 OLC B 1 304 22 OLC OLC . 
P 2 OLC B 1 305 26 OLC OLC . 
Q 2 OLC C 1 301 11 OLC OLC . 
R 2 OLC C 1 302 27 OLC OLC . 
S 2 OLC C 1 303 31 OLC OLC . 
T 2 OLC D 1 301 12 OLC OLC . 
U 2 OLC D 1 302 19 OLC OLC . 
V 2 OLC D 1 303 24 OLC OLC . 
W 2 OLC D 1 304 25 OLC OLC . 
X 2 OLC D 1 305 28 OLC OLC . 
Y 2 OLC E 1 301 2 OLC OLC . 
Z 2 OLC E 1 302 3 OLC OLC . 
AA 2 OLC E 1 303 13 OLC OLC . 
BA 2 OLC E 1 304 17 OLC OLC . 
CA 2 OLC E 1 305 18 OLC OLC . 
DA 2 OLC E 1 306 29 OLC OLC . 
EA 4 HOH B 1 401 4 HOH HOH . 
EA 4 HOH B 2 402 9 HOH HOH . 
EA 4 HOH B 3 403 6 HOH HOH . 
EA 4 HOH B 4 404 1 HOH HOH . 
FA 4 HOH C 1 401 8 HOH HOH . 
FA 4 HOH C 2 402 2 HOH HOH . 
FA 4 HOH C 3 403 10 HOH HOH . 
GA 4 HOH D 1 401 3 HOH HOH . 
GA 4 HOH D 2 402 12 HOH HOH . 
HA 4 HOH E 1 401 11 HOH HOH . 
HA 4 HOH E 2 402 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . J 2 121.437 58.217 59.477 1 68.95 ? C10 OLC 304 A 1 
HETATM 2 C C9 OLC . . . J 2 122.479 58.899 58.654 1 66.97 ? C9 OLC 304 A 1 
HETATM 3 C C11 OLC . . . J 2 120.832 58.932 60.638 1 68.5 ? C11 OLC 304 A 1 
HETATM 4 C C8 OLC . . . J 2 122.825 60.321 58.944 1 68.16 ? C8 OLC 304 A 1 
HETATM 5 C C7 OLC . . . J 2 124.287 60.534 58.739 1 66.93 ? C7 OLC 304 A 1 
HETATM 6 C C6 OLC . . . J 2 124.618 60.438 57.288 1 65.38 ? C6 OLC 304 A 1 
HETATM 7 C C5 OLC . . . J 2 125.468 61.6 56.902 1 64.87 ? C5 OLC 304 A 1 
HETATM 8 C C4 OLC . . . J 2 126.707 61.126 56.219 1 65.03 ? C4 OLC 304 A 1 
HETATM 9 C C3 OLC . . . J 2 127.202 62.207 55.318 1 68.22 ? C3 OLC 304 A 1 
HETATM 10 C C2 OLC . . . J 2 128.654 62.012 55.044 1 72.55 ? C2 OLC 304 A 1 
HETATM 11 C C1 OLC . . . J 2 129.031 62.754 53.807 1 77.12 ? C1 OLC 304 A 1 
HETATM 12 O O19 OLC . . . J 2 130.17 62.405 53.121 1 79.07 ? O19 OLC 304 A 1 
HETATM 13 O O20 OLC . . . J 2 128.3 63.633 53.373 1 78.03 ? O20 OLC 304 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           50 
_model_server_stats.create_model_time_ms    77 
_model_server_stats.query_time_ms           776 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           13 
#