data_5I2B # _model_server_result.job_id lqNGxJQdfhdnYp64NK4CNQ _model_server_result.datetime_utc '2024-12-27 02:11:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5I2B # _exptl.entry_id 5I2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I2B _cell.length_a 38.59 _cell.length_b 70.25 _cell.length_c 140.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 38.59 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 107 A CYS 99 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A NE2 HIS 149 A HIS 141 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A NE2 HIS 153 A HIS 145 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 B ZN ZN . A ZN 201 1_555 C O4 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 B ZN ZN . A ZN 201 1_555 C O2 BB2 . A BB2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 5I2B _atom_sites.fract_transf_matrix[1][1] 0.025913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 201 ZN ZN . C 3 BB2 A 1 202 301 BB2 BB2 . D 4 EDO A 1 203 401 EDO EDO . E 4 EDO A 1 204 402 EDO EDO . F 4 EDO A 1 205 403 EDO EDO . G 4 EDO A 1 206 404 EDO EDO . H 4 EDO A 1 207 405 EDO EDO . I 5 HOH A 1 301 137 HOH HOH . I 5 HOH A 2 302 152 HOH HOH . I 5 HOH A 3 303 189 HOH HOH . I 5 HOH A 4 304 155 HOH HOH . I 5 HOH A 5 305 11 HOH HOH . I 5 HOH A 6 306 87 HOH HOH . I 5 HOH A 7 307 179 HOH HOH . I 5 HOH A 8 308 83 HOH HOH . I 5 HOH A 9 309 107 HOH HOH . I 5 HOH A 10 310 7 HOH HOH . I 5 HOH A 11 311 182 HOH HOH . I 5 HOH A 12 312 20 HOH HOH . I 5 HOH A 13 313 57 HOH HOH . I 5 HOH A 14 314 89 HOH HOH . I 5 HOH A 15 315 149 HOH HOH . I 5 HOH A 16 316 38 HOH HOH . I 5 HOH A 17 317 110 HOH HOH . I 5 HOH A 18 318 50 HOH HOH . I 5 HOH A 19 319 53 HOH HOH . I 5 HOH A 20 320 31 HOH HOH . I 5 HOH A 21 321 59 HOH HOH . I 5 HOH A 22 322 52 HOH HOH . I 5 HOH A 23 323 3 HOH HOH . I 5 HOH A 24 324 93 HOH HOH . I 5 HOH A 25 325 158 HOH HOH . I 5 HOH A 26 326 74 HOH HOH . I 5 HOH A 27 327 28 HOH HOH . I 5 HOH A 28 328 125 HOH HOH . I 5 HOH A 29 329 23 HOH HOH . I 5 HOH A 30 330 63 HOH HOH . I 5 HOH A 31 331 17 HOH HOH . I 5 HOH A 32 332 175 HOH HOH . I 5 HOH A 33 333 126 HOH HOH . I 5 HOH A 34 334 96 HOH HOH . I 5 HOH A 35 335 5 HOH HOH . I 5 HOH A 36 336 27 HOH HOH . I 5 HOH A 37 337 24 HOH HOH . I 5 HOH A 38 338 10 HOH HOH . I 5 HOH A 39 339 76 HOH HOH . I 5 HOH A 40 340 32 HOH HOH . I 5 HOH A 41 341 22 HOH HOH . I 5 HOH A 42 342 55 HOH HOH . I 5 HOH A 43 343 54 HOH HOH . I 5 HOH A 44 344 160 HOH HOH . I 5 HOH A 45 345 18 HOH HOH . I 5 HOH A 46 346 40 HOH HOH . I 5 HOH A 47 347 61 HOH HOH . I 5 HOH A 48 348 154 HOH HOH . I 5 HOH A 49 349 19 HOH HOH . I 5 HOH A 50 350 14 HOH HOH . I 5 HOH A 51 351 25 HOH HOH . I 5 HOH A 52 352 51 HOH HOH . I 5 HOH A 53 353 190 HOH HOH . I 5 HOH A 54 354 37 HOH HOH . I 5 HOH A 55 355 21 HOH HOH . I 5 HOH A 56 356 70 HOH HOH . I 5 HOH A 57 357 104 HOH HOH . I 5 HOH A 58 358 94 HOH HOH . I 5 HOH A 59 359 4 HOH HOH . I 5 HOH A 60 360 6 HOH HOH . I 5 HOH A 61 361 101 HOH HOH . I 5 HOH A 62 362 102 HOH HOH . I 5 HOH A 63 363 159 HOH HOH . I 5 HOH A 64 364 79 HOH HOH . I 5 HOH A 65 365 43 HOH HOH . I 5 HOH A 66 366 81 HOH HOH . I 5 HOH A 67 367 26 HOH HOH . I 5 HOH A 68 368 46 HOH HOH . I 5 HOH A 69 369 9 HOH HOH . I 5 HOH A 70 370 95 HOH HOH . I 5 HOH A 71 371 85 HOH HOH . I 5 HOH A 72 372 171 HOH HOH . I 5 HOH A 73 373 13 HOH HOH . I 5 HOH A 74 374 114 HOH HOH . I 5 HOH A 75 375 176 HOH HOH . I 5 HOH A 76 376 15 HOH HOH . I 5 HOH A 77 377 44 HOH HOH . I 5 HOH A 78 378 48 HOH HOH . I 5 HOH A 79 379 191 HOH HOH . I 5 HOH A 80 380 77 HOH HOH . I 5 HOH A 81 381 16 HOH HOH . I 5 HOH A 82 382 188 HOH HOH . I 5 HOH A 83 383 117 HOH HOH . I 5 HOH A 84 384 131 HOH HOH . I 5 HOH A 85 385 8 HOH HOH . I 5 HOH A 86 386 2 HOH HOH . I 5 HOH A 87 387 99 HOH HOH . I 5 HOH A 88 388 141 HOH HOH . I 5 HOH A 89 389 90 HOH HOH . I 5 HOH A 90 390 97 HOH HOH . I 5 HOH A 91 391 78 HOH HOH . I 5 HOH A 92 392 98 HOH HOH . I 5 HOH A 93 393 36 HOH HOH . I 5 HOH A 94 394 45 HOH HOH . I 5 HOH A 95 395 29 HOH HOH . I 5 HOH A 96 396 34 HOH HOH . I 5 HOH A 97 397 164 HOH HOH . I 5 HOH A 98 398 80 HOH HOH . I 5 HOH A 99 399 122 HOH HOH . I 5 HOH A 100 400 56 HOH HOH . I 5 HOH A 101 401 49 HOH HOH . I 5 HOH A 102 402 42 HOH HOH . I 5 HOH A 103 403 192 HOH HOH . I 5 HOH A 104 404 156 HOH HOH . I 5 HOH A 105 405 39 HOH HOH . I 5 HOH A 106 406 187 HOH HOH . I 5 HOH A 107 407 60 HOH HOH . I 5 HOH A 108 408 161 HOH HOH . I 5 HOH A 109 409 142 HOH HOH . I 5 HOH A 110 410 143 HOH HOH . I 5 HOH A 111 411 132 HOH HOH . I 5 HOH A 112 412 157 HOH HOH . I 5 HOH A 113 413 193 HOH HOH . I 5 HOH A 114 414 136 HOH HOH . I 5 HOH A 115 415 113 HOH HOH . I 5 HOH A 116 416 123 HOH HOH . I 5 HOH A 117 417 82 HOH HOH . I 5 HOH A 118 418 194 HOH HOH . I 5 HOH A 119 419 153 HOH HOH . I 5 HOH A 120 420 73 HOH HOH . I 5 HOH A 121 421 170 HOH HOH . I 5 HOH A 122 422 12 HOH HOH . I 5 HOH A 123 423 118 HOH HOH . I 5 HOH A 124 424 108 HOH HOH . I 5 HOH A 125 425 100 HOH HOH . I 5 HOH A 126 426 130 HOH HOH . I 5 HOH A 127 427 166 HOH HOH . I 5 HOH A 128 428 86 HOH HOH . I 5 HOH A 129 429 134 HOH HOH . I 5 HOH A 130 430 163 HOH HOH . I 5 HOH A 131 431 30 HOH HOH . I 5 HOH A 132 432 58 HOH HOH . I 5 HOH A 133 433 116 HOH HOH . I 5 HOH A 134 434 167 HOH HOH . I 5 HOH A 135 435 92 HOH HOH . I 5 HOH A 136 436 133 HOH HOH . I 5 HOH A 137 437 121 HOH HOH . I 5 HOH A 138 438 127 HOH HOH . I 5 HOH A 139 439 84 HOH HOH . I 5 HOH A 140 440 138 HOH HOH . I 5 HOH A 141 441 148 HOH HOH . I 5 HOH A 142 442 106 HOH HOH . I 5 HOH A 143 443 162 HOH HOH . I 5 HOH A 144 444 124 HOH HOH . I 5 HOH A 145 445 103 HOH HOH . I 5 HOH A 146 446 112 HOH HOH . I 5 HOH A 147 447 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 38.807 86.349 25.763 1 58.23 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 4 37.717 85.783 25.019 1 58.19 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 4 38.34 87.548 26.587 1 58.06 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 4 38.147 88.683 25.737 1 58.28 ? O2 EDO 205 A 1 HETATM 5 H H11 EDO . . . F 4 39.593 86.665 25.074 1 69.87 ? H11 EDO 205 A 1 HETATM 6 H H12 EDO . . . F 4 39.227 85.591 26.427 1 69.87 ? H12 EDO 205 A 1 HETATM 7 H HO1 EDO . . . F 4 38.034 85.028 24.506 1 69.83 ? HO1 EDO 205 A 1 HETATM 8 H H21 EDO . . . F 4 39.085 87.782 27.35 1 69.67 ? H21 EDO 205 A 1 HETATM 9 H H22 EDO . . . F 4 37.402 87.304 27.092 1 69.67 ? H22 EDO 205 A 1 HETATM 10 H HO2 EDO . . . F 4 37.852 89.436 26.266 1 69.93 ? HO2 EDO 205 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 10 #