data_5I2E # _model_server_result.job_id wDqcuzeheCKXDDzs7kFGPg _model_server_result.datetime_utc '2024-12-18 02:11:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5I2E # _exptl.entry_id 5I2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.536 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.73 _cell.angle_gamma 90 _cell.entry_id 5I2E _cell.length_a 76.767 _cell.length_b 46.345 _cell.length_c 63.932 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H23 N7 O7 S' _chem_comp.formula_weight 541.536 _chem_comp.id 67D _chem_comp.mon_nstd_flag . _chem_comp.name 3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N2 67D sing 1 n y C3 C7 67D doub 2 n y N2 C6 67D doub 3 n y C7 N1 67D sing 4 n y C6 N1 67D sing 5 n y C6 C5 67D sing 6 n y N1 C2 67D sing 7 n y C5 N7 67D sing 8 n y C5 C4 67D doub 9 n y N7 C8 67D doub 10 n y C2 N3 67D doub 11 n y C4 N3 67D sing 12 n y C4 N9 67D sing 13 n y C8 N9 67D sing 14 n y N9 C1' 67D sing 15 n n C1' C2' 67D sing 16 n n C1' O4' 67D sing 17 n n O2' C2' 67D sing 18 n n C2' C3' 67D sing 19 n n O4' C4' 67D sing 20 n n C3' C4' 67D sing 21 n n C3' O3' 67D sing 22 n n C4' C5' 67D sing 23 n n C5' O5' 67D sing 24 n n O13 C9 67D doub 25 n n O5' S 67D sing 26 n n O3P S 67D doub 27 n n C23 N22 67D sing 28 n y C23 C19 67D doub 29 n y S N 67D sing 30 n n S O2P 67D doub 31 n n C11 C19 67D sing 32 n n C11 C10 67D sing 33 n n C9 N 67D sing 34 n n C9 C10 67D sing 35 n n N22 C21 67D sing 36 n y C19 C20 67D sing 37 n y C21 C20 67D doub 38 n y C21 C36 67D sing 39 n y C20 C39 67D sing 40 n y C36 C37 67D doub 41 n y C39 C38 67D doub 42 n y C37 C38 67D sing 43 n y N H1 67D sing 44 n n C7 H2 67D sing 45 n n C3 H3 67D sing 46 n n C2 H4 67D sing 47 n n C8 H5 67D sing 48 n n C11 H6 67D sing 49 n n C11 H7 67D sing 50 n n C10 H8 67D sing 51 n n C10 H9 67D sing 52 n n C1' H10 67D sing 53 n n C2' H11 67D sing 54 n n O2' H12 67D sing 55 n n C3' H13 67D sing 56 n n O3' H14 67D sing 57 n n C4' H15 67D sing 58 n n C5' H16 67D sing 59 n n C5' H17 67D sing 60 n n N22 H18 67D sing 61 n n C23 H19 67D sing 62 n n C36 H20 67D sing 63 n n C37 H21 67D sing 64 n n C38 H22 67D sing 65 n n C39 H23 67D sing 66 n n # _atom_sites.entry_id 5I2E _atom_sites.fract_transf_matrix[1][1] 0.013026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001077 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 67D A 1 201 1 67D 854 . D 3 GOL B 1 201 1 GOL GOL . E 4 HOH A 1 301 52 HOH HOH . E 4 HOH A 2 302 58 HOH HOH . E 4 HOH A 3 303 23 HOH HOH . E 4 HOH A 4 304 19 HOH HOH . E 4 HOH A 5 305 34 HOH HOH . E 4 HOH A 6 306 85 HOH HOH . E 4 HOH A 7 307 51 HOH HOH . E 4 HOH A 8 308 55 HOH HOH . E 4 HOH A 9 309 75 HOH HOH . E 4 HOH A 10 310 77 HOH HOH . E 4 HOH A 11 311 80 HOH HOH . E 4 HOH A 12 312 33 HOH HOH . E 4 HOH A 13 313 79 HOH HOH . E 4 HOH A 14 314 10 HOH HOH . E 4 HOH A 15 315 69 HOH HOH . E 4 HOH A 16 316 21 HOH HOH . E 4 HOH A 17 317 32 HOH HOH . E 4 HOH A 18 318 39 HOH HOH . E 4 HOH A 19 319 20 HOH HOH . E 4 HOH A 20 320 88 HOH HOH . E 4 HOH A 21 321 53 HOH HOH . E 4 HOH A 22 322 30 HOH HOH . E 4 HOH A 23 323 26 HOH HOH . E 4 HOH A 24 324 98 HOH HOH . E 4 HOH A 25 325 68 HOH HOH . E 4 HOH A 26 326 62 HOH HOH . E 4 HOH A 27 327 9 HOH HOH . E 4 HOH A 28 328 37 HOH HOH . E 4 HOH A 29 329 92 HOH HOH . E 4 HOH A 30 330 5 HOH HOH . E 4 HOH A 31 331 12 HOH HOH . E 4 HOH A 32 332 101 HOH HOH . E 4 HOH A 33 333 72 HOH HOH . E 4 HOH A 34 334 65 HOH HOH . E 4 HOH A 35 335 60 HOH HOH . E 4 HOH A 36 336 87 HOH HOH . E 4 HOH A 37 337 96 HOH HOH . E 4 HOH A 38 338 40 HOH HOH . E 4 HOH A 39 339 86 HOH HOH . E 4 HOH A 40 340 56 HOH HOH . E 4 HOH A 41 341 81 HOH HOH . E 4 HOH A 42 342 97 HOH HOH . E 4 HOH A 43 343 105 HOH HOH . E 4 HOH A 44 344 116 HOH HOH . E 4 HOH A 45 345 24 HOH HOH . E 4 HOH A 46 346 45 HOH HOH . E 4 HOH A 47 347 28 HOH HOH . E 4 HOH A 48 348 89 HOH HOH . E 4 HOH A 49 349 63 HOH HOH . E 4 HOH A 50 350 61 HOH HOH . E 4 HOH A 51 351 11 HOH HOH . E 4 HOH A 52 352 103 HOH HOH . E 4 HOH A 53 353 76 HOH HOH . F 4 HOH B 1 301 36 HOH HOH . F 4 HOH B 2 302 83 HOH HOH . F 4 HOH B 3 303 93 HOH HOH . F 4 HOH B 4 304 110 HOH HOH . F 4 HOH B 5 305 43 HOH HOH . F 4 HOH B 6 306 111 HOH HOH . F 4 HOH B 7 307 78 HOH HOH . F 4 HOH B 8 308 64 HOH HOH . F 4 HOH B 9 309 25 HOH HOH . F 4 HOH B 10 310 44 HOH HOH . F 4 HOH B 11 311 74 HOH HOH . F 4 HOH B 12 312 91 HOH HOH . F 4 HOH B 13 313 107 HOH HOH . F 4 HOH B 14 314 57 HOH HOH . F 4 HOH B 15 315 14 HOH HOH . F 4 HOH B 16 316 31 HOH HOH . F 4 HOH B 17 317 35 HOH HOH . F 4 HOH B 18 318 16 HOH HOH . F 4 HOH B 19 319 59 HOH HOH . F 4 HOH B 20 320 15 HOH HOH . F 4 HOH B 21 321 22 HOH HOH . F 4 HOH B 22 322 47 HOH HOH . F 4 HOH B 23 323 113 HOH HOH . F 4 HOH B 24 324 29 HOH HOH . F 4 HOH B 25 325 99 HOH HOH . F 4 HOH B 26 326 50 HOH HOH . F 4 HOH B 27 327 13 HOH HOH . F 4 HOH B 28 328 73 HOH HOH . F 4 HOH B 29 329 18 HOH HOH . F 4 HOH B 30 330 84 HOH HOH . F 4 HOH B 31 331 54 HOH HOH . F 4 HOH B 32 332 3 HOH HOH . F 4 HOH B 33 333 70 HOH HOH . F 4 HOH B 34 334 17 HOH HOH . F 4 HOH B 35 335 42 HOH HOH . F 4 HOH B 36 336 41 HOH HOH . F 4 HOH B 37 337 2 HOH HOH . F 4 HOH B 38 338 46 HOH HOH . F 4 HOH B 39 339 104 HOH HOH . F 4 HOH B 40 340 71 HOH HOH . F 4 HOH B 41 341 38 HOH HOH . F 4 HOH B 42 342 95 HOH HOH . F 4 HOH B 43 343 106 HOH HOH . F 4 HOH B 44 344 115 HOH HOH . F 4 HOH B 45 345 27 HOH HOH . F 4 HOH B 46 346 48 HOH HOH . F 4 HOH B 47 347 49 HOH HOH . F 4 HOH B 48 348 114 HOH HOH . F 4 HOH B 49 349 67 HOH HOH . F 4 HOH B 50 350 90 HOH HOH . F 4 HOH B 51 351 109 HOH HOH . F 4 HOH B 52 352 102 HOH HOH . F 4 HOH B 53 353 112 HOH HOH . F 4 HOH B 54 354 66 HOH HOH . F 4 HOH B 55 355 108 HOH HOH . F 4 HOH B 56 356 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S 67D . . . C 2 -30.982 3.947 -23.852 1 29.53 ? S 67D 201 A 1 HETATM 2 N N 67D . . . C 2 -31.79 5.074 -23.071 1 46.61 ? N 67D 201 A 1 HETATM 3 C C7 67D . . . C 2 -25.616 4.316 -34.86 1 23.12 ? C7 67D 201 A 1 HETATM 4 C C6 67D . . . C 2 -27.427 4.458 -33.764 1 23.37 ? C6 67D 201 A 1 HETATM 5 C C5 67D . . . C 2 -28.299 4.691 -32.61 1 24.24 ? C5 67D 201 A 1 HETATM 6 C C4 67D . . . C 2 -27.671 5.079 -31.369 1 20.95 ? C4 67D 201 A 1 HETATM 7 C C3 67D . . . C 2 -26.695 4.017 -35.691 1 23.21 ? C3 67D 201 A 1 HETATM 8 C C2 67D . . . C 2 -25.571 4.952 -32.456 1 21.43 ? C2 67D 201 A 1 HETATM 9 C C8 67D . . . C 2 -29.851 4.946 -31.183 1 25.86 ? C8 67D 201 A 1 HETATM 10 C C9 67D . . . C 2 -31.966 6.213 -23.707 1 36.78 ? C9 67D 201 A 1 HETATM 11 C C11 67D . . . C 2 -32.255 8.616 -23.805 1 46.52 ? C11 67D 201 A 1 HETATM 12 C C10 67D . . . C 2 -31.825 7.472 -22.901 1 36.18 ? C10 67D 201 A 1 HETATM 13 N N1 67D . . . C 2 -26.11 4.586 -33.646 1 22 ? N1 67D 201 A 1 HETATM 14 N N3 67D . . . C 2 -26.314 5.183 -31.346 1 23.11 ? N3 67D 201 A 1 HETATM 15 N N7 67D . . . C 2 -29.635 4.619 -32.495 1 23.35 ? N7 67D 201 A 1 HETATM 16 N N9 67D . . . C 2 -28.689 5.223 -30.532 1 22.89 ? N9 67D 201 A 1 HETATM 17 C C1' 67D . . . C 2 -28.471 5.597 -29.136 1 22.13 ? C1' 67D 201 A 1 HETATM 18 O O4' 67D . . . C 2 -28.781 4.505 -28.32 1 21.73 ? O4' 67D 201 A 1 HETATM 19 C C2' 67D . . . C 2 -29.346 6.728 -28.608 1 21.9 ? C2' 67D 201 A 1 HETATM 20 O O2' 67D . . . C 2 -28.904 7.995 -29.052 1 21.58 ? O2' 67D 201 A 1 HETATM 21 C C3' 67D . . . C 2 -29.254 6.497 -27.088 1 23.33 ? C3' 67D 201 A 1 HETATM 22 O O3' 67D . . . C 2 -28.186 7.267 -26.528 1 21.52 ? O3' 67D 201 A 1 HETATM 23 C C4' 67D . . . C 2 -28.934 4.996 -26.967 1 21.22 ? C4' 67D 201 A 1 HETATM 24 C C5' 67D . . . C 2 -29.96 4.174 -26.235 1 23.08 ? C5' 67D 201 A 1 HETATM 25 O O5' 67D . . . C 2 -30 4.562 -24.859 1 23.21 ? O5' 67D 201 A 1 HETATM 26 O O2P 67D . . . C 2 -30.233 3.299 -22.822 1 31.32 ? O2P 67D 201 A 1 HETATM 27 O O3P 67D . . . C 2 -31.848 3.009 -24.524 1 24.11 ? O3P 67D 201 A 1 HETATM 28 N N2 67D . . . C 2 -27.854 4.109 -34.989 1 27.59 ? N2 67D 201 A 1 HETATM 29 O O13 67D . . . C 2 -32.199 6.25 -24.896 1 40.1 ? O13 67D 201 A 1 HETATM 30 C C19 67D . . . C 2 -33.435 9.388 -23.261 1 49.8 ? C19 67D 201 A 1 HETATM 31 C C20 67D . . . C 2 -33.933 9.535 -21.865 1 38.52 ? C20 67D 201 A 1 HETATM 32 C C21 67D . . . C 2 -35.109 10.424 -21.972 1 49.18 ? C21 67D 201 A 1 HETATM 33 N N22 67D . . . C 2 -35.26 10.741 -23.271 1 61.09 ? N22 67D 201 A 1 HETATM 34 C C23 67D . . . C 2 -34.3 10.154 -24.037 1 50.61 ? C23 67D 201 A 1 HETATM 35 C C36 67D . . . C 2 -35.803 10.759 -20.819 1 45.46 ? C36 67D 201 A 1 HETATM 36 C C37 67D . . . C 2 -35.369 10.248 -19.603 1 39.26 ? C37 67D 201 A 1 HETATM 37 C C38 67D . . . C 2 -34.252 9.419 -19.504 1 28.14 ? C38 67D 201 A 1 HETATM 38 C C39 67D . . . C 2 -33.523 9.042 -20.626 1 32.14 ? C39 67D 201 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #