data_5I2E
#
_model_server_result.job_id            ZJOhEiMRWEB2RWXhmC88Mw 
_model_server_result.datetime_utc      '2024-11-24 00:13:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i2e 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5I2E 
#
_exptl.entry_id    5I2E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.73 
_cell.angle_gamma         90 
_cell.entry_id            5I2E 
_cell.length_a            76.767 
_cell.length_b            46.345 
_cell.length_c            63.932 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5I2E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 195 n n 
C1 C2 GOL sing 196 n n 
C1 H11 GOL sing 197 n n 
C1 H12 GOL sing 198 n n 
O1 HO1 GOL sing 199 n n 
C2 O2 GOL sing 200 n n 
C2 C3 GOL sing 201 n n 
C2 H2 GOL sing 202 n n 
O2 HO2 GOL sing 203 n n 
C3 O3 GOL sing 204 n n 
C3 H31 GOL sing 205 n n 
C3 H32 GOL sing 206 n n 
O3 HO3 GOL sing 207 n n 
#
_atom_sites.entry_id                     5I2E 
_atom_sites.fract_transf_matrix[1][1]    0.013026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001077 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021577 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 67D A 1 201 1 67D 854 . 
D 3 GOL B 1 201 1 GOL GOL . 
E 4 HOH A 1 301 52 HOH HOH . 
E 4 HOH A 2 302 58 HOH HOH . 
E 4 HOH A 3 303 23 HOH HOH . 
E 4 HOH A 4 304 19 HOH HOH . 
E 4 HOH A 5 305 34 HOH HOH . 
E 4 HOH A 6 306 85 HOH HOH . 
E 4 HOH A 7 307 51 HOH HOH . 
E 4 HOH A 8 308 55 HOH HOH . 
E 4 HOH A 9 309 75 HOH HOH . 
E 4 HOH A 10 310 77 HOH HOH . 
E 4 HOH A 11 311 80 HOH HOH . 
E 4 HOH A 12 312 33 HOH HOH . 
E 4 HOH A 13 313 79 HOH HOH . 
E 4 HOH A 14 314 10 HOH HOH . 
E 4 HOH A 15 315 69 HOH HOH . 
E 4 HOH A 16 316 21 HOH HOH . 
E 4 HOH A 17 317 32 HOH HOH . 
E 4 HOH A 18 318 39 HOH HOH . 
E 4 HOH A 19 319 20 HOH HOH . 
E 4 HOH A 20 320 88 HOH HOH . 
E 4 HOH A 21 321 53 HOH HOH . 
E 4 HOH A 22 322 30 HOH HOH . 
E 4 HOH A 23 323 26 HOH HOH . 
E 4 HOH A 24 324 98 HOH HOH . 
E 4 HOH A 25 325 68 HOH HOH . 
E 4 HOH A 26 326 62 HOH HOH . 
E 4 HOH A 27 327 9 HOH HOH . 
E 4 HOH A 28 328 37 HOH HOH . 
E 4 HOH A 29 329 92 HOH HOH . 
E 4 HOH A 30 330 5 HOH HOH . 
E 4 HOH A 31 331 12 HOH HOH . 
E 4 HOH A 32 332 101 HOH HOH . 
E 4 HOH A 33 333 72 HOH HOH . 
E 4 HOH A 34 334 65 HOH HOH . 
E 4 HOH A 35 335 60 HOH HOH . 
E 4 HOH A 36 336 87 HOH HOH . 
E 4 HOH A 37 337 96 HOH HOH . 
E 4 HOH A 38 338 40 HOH HOH . 
E 4 HOH A 39 339 86 HOH HOH . 
E 4 HOH A 40 340 56 HOH HOH . 
E 4 HOH A 41 341 81 HOH HOH . 
E 4 HOH A 42 342 97 HOH HOH . 
E 4 HOH A 43 343 105 HOH HOH . 
E 4 HOH A 44 344 116 HOH HOH . 
E 4 HOH A 45 345 24 HOH HOH . 
E 4 HOH A 46 346 45 HOH HOH . 
E 4 HOH A 47 347 28 HOH HOH . 
E 4 HOH A 48 348 89 HOH HOH . 
E 4 HOH A 49 349 63 HOH HOH . 
E 4 HOH A 50 350 61 HOH HOH . 
E 4 HOH A 51 351 11 HOH HOH . 
E 4 HOH A 52 352 103 HOH HOH . 
E 4 HOH A 53 353 76 HOH HOH . 
F 4 HOH B 1 301 36 HOH HOH . 
F 4 HOH B 2 302 83 HOH HOH . 
F 4 HOH B 3 303 93 HOH HOH . 
F 4 HOH B 4 304 110 HOH HOH . 
F 4 HOH B 5 305 43 HOH HOH . 
F 4 HOH B 6 306 111 HOH HOH . 
F 4 HOH B 7 307 78 HOH HOH . 
F 4 HOH B 8 308 64 HOH HOH . 
F 4 HOH B 9 309 25 HOH HOH . 
F 4 HOH B 10 310 44 HOH HOH . 
F 4 HOH B 11 311 74 HOH HOH . 
F 4 HOH B 12 312 91 HOH HOH . 
F 4 HOH B 13 313 107 HOH HOH . 
F 4 HOH B 14 314 57 HOH HOH . 
F 4 HOH B 15 315 14 HOH HOH . 
F 4 HOH B 16 316 31 HOH HOH . 
F 4 HOH B 17 317 35 HOH HOH . 
F 4 HOH B 18 318 16 HOH HOH . 
F 4 HOH B 19 319 59 HOH HOH . 
F 4 HOH B 20 320 15 HOH HOH . 
F 4 HOH B 21 321 22 HOH HOH . 
F 4 HOH B 22 322 47 HOH HOH . 
F 4 HOH B 23 323 113 HOH HOH . 
F 4 HOH B 24 324 29 HOH HOH . 
F 4 HOH B 25 325 99 HOH HOH . 
F 4 HOH B 26 326 50 HOH HOH . 
F 4 HOH B 27 327 13 HOH HOH . 
F 4 HOH B 28 328 73 HOH HOH . 
F 4 HOH B 29 329 18 HOH HOH . 
F 4 HOH B 30 330 84 HOH HOH . 
F 4 HOH B 31 331 54 HOH HOH . 
F 4 HOH B 32 332 3 HOH HOH . 
F 4 HOH B 33 333 70 HOH HOH . 
F 4 HOH B 34 334 17 HOH HOH . 
F 4 HOH B 35 335 42 HOH HOH . 
F 4 HOH B 36 336 41 HOH HOH . 
F 4 HOH B 37 337 2 HOH HOH . 
F 4 HOH B 38 338 46 HOH HOH . 
F 4 HOH B 39 339 104 HOH HOH . 
F 4 HOH B 40 340 71 HOH HOH . 
F 4 HOH B 41 341 38 HOH HOH . 
F 4 HOH B 42 342 95 HOH HOH . 
F 4 HOH B 43 343 106 HOH HOH . 
F 4 HOH B 44 344 115 HOH HOH . 
F 4 HOH B 45 345 27 HOH HOH . 
F 4 HOH B 46 346 48 HOH HOH . 
F 4 HOH B 47 347 49 HOH HOH . 
F 4 HOH B 48 348 114 HOH HOH . 
F 4 HOH B 49 349 67 HOH HOH . 
F 4 HOH B 50 350 90 HOH HOH . 
F 4 HOH B 51 351 109 HOH HOH . 
F 4 HOH B 52 352 102 HOH HOH . 
F 4 HOH B 53 353 112 HOH HOH . 
F 4 HOH B 54 354 66 HOH HOH . 
F 4 HOH B 55 355 108 HOH HOH . 
F 4 HOH B 56 356 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -20.865 12.745 -7.794 1 30.8 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . D 3 -19.853 13.679 -8.121 1 23.93 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . D 3 -20.569 12.06 -6.457 1 31.45 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . D 3 -20.733 12.975 -5.399 1 37.27 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . D 3 -21.517 10.884 -6.263 1 34.92 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . D 3 -21.238 10.215 -5.052 1 43.48 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
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