data_5I2F # _model_server_result.job_id 3Y76Nmcn837fBbuEeuwrUQ _model_server_result.datetime_utc '2024-11-21 23:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 5I2F # _exptl.entry_id 5I2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.44 _cell.angle_gamma 90 _cell.entry_id 5I2F _cell.length_a 77.493 _cell.length_b 46.314 _cell.length_c 64.073 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 154 n n C1 C2 EDO sing 155 n n C1 H11 EDO sing 156 n n C1 H12 EDO sing 157 n n O1 HO1 EDO sing 158 n n C2 O2 EDO sing 159 n n C2 H21 EDO sing 160 n n C2 H22 EDO sing 161 n n O2 HO2 EDO sing 162 n n # _atom_sites.entry_id 5I2F _atom_sites.fract_transf_matrix[1][1] 0.012904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO B 1 201 127 EDO EDO . D 3 BS5 A 1 201 127 BS5 BS5 . E 2 EDO A 1 202 128 EDO EDO . F 4 HOH B 1 301 152 HOH HOH . F 4 HOH B 2 302 156 HOH HOH . F 4 HOH B 3 303 194 HOH HOH . F 4 HOH B 4 304 149 HOH HOH . F 4 HOH B 5 305 183 HOH HOH . F 4 HOH B 6 306 180 HOH HOH . F 4 HOH B 7 307 168 HOH HOH . F 4 HOH B 8 308 138 HOH HOH . F 4 HOH B 9 309 218 HOH HOH . F 4 HOH B 10 310 131 HOH HOH . F 4 HOH B 11 311 229 HOH HOH . F 4 HOH B 12 312 132 HOH HOH . F 4 HOH B 13 313 136 HOH HOH . F 4 HOH B 14 314 198 HOH HOH . F 4 HOH B 15 315 144 HOH HOH . F 4 HOH B 16 316 195 HOH HOH . F 4 HOH B 17 317 153 HOH HOH . F 4 HOH B 18 318 188 HOH HOH . F 4 HOH B 19 319 207 HOH HOH . F 4 HOH B 20 320 128 HOH HOH . F 4 HOH B 21 321 154 HOH HOH . F 4 HOH B 22 322 175 HOH HOH . F 4 HOH B 23 323 161 HOH HOH . F 4 HOH B 24 324 141 HOH HOH . F 4 HOH B 25 325 142 HOH HOH . F 4 HOH B 26 326 146 HOH HOH . F 4 HOH B 27 327 172 HOH HOH . F 4 HOH B 28 328 202 HOH HOH . F 4 HOH B 29 329 139 HOH HOH . F 4 HOH B 30 330 216 HOH HOH . F 4 HOH B 31 331 189 HOH HOH . F 4 HOH B 32 332 181 HOH HOH . F 4 HOH B 33 333 148 HOH HOH . F 4 HOH B 34 334 220 HOH HOH . F 4 HOH B 35 335 135 HOH HOH . F 4 HOH B 36 336 197 HOH HOH . F 4 HOH B 37 337 133 HOH HOH . F 4 HOH B 38 338 242 HOH HOH . F 4 HOH B 39 339 214 HOH HOH . F 4 HOH B 40 340 143 HOH HOH . F 4 HOH B 41 341 178 HOH HOH . F 4 HOH B 42 342 185 HOH HOH . F 4 HOH B 43 343 170 HOH HOH . F 4 HOH B 44 344 137 HOH HOH . F 4 HOH B 45 345 176 HOH HOH . F 4 HOH B 46 346 151 HOH HOH . F 4 HOH B 47 347 130 HOH HOH . F 4 HOH B 48 348 190 HOH HOH . F 4 HOH B 49 349 134 HOH HOH . F 4 HOH B 50 350 231 HOH HOH . F 4 HOH B 51 351 150 HOH HOH . F 4 HOH B 52 352 184 HOH HOH . F 4 HOH B 53 353 199 HOH HOH . F 4 HOH B 54 354 206 HOH HOH . F 4 HOH B 55 355 155 HOH HOH . F 4 HOH B 56 356 223 HOH HOH . F 4 HOH B 57 357 235 HOH HOH . F 4 HOH B 58 358 145 HOH HOH . F 4 HOH B 59 359 230 HOH HOH . F 4 HOH B 60 360 204 HOH HOH . F 4 HOH B 61 361 237 HOH HOH . F 4 HOH B 62 362 173 HOH HOH . F 4 HOH B 63 363 147 HOH HOH . F 4 HOH B 64 364 205 HOH HOH . F 4 HOH B 65 365 158 HOH HOH . F 4 HOH B 66 366 246 HOH HOH . F 4 HOH B 67 367 196 HOH HOH . F 4 HOH B 68 368 160 HOH HOH . F 4 HOH B 69 369 222 HOH HOH . F 4 HOH B 70 370 192 HOH HOH . F 4 HOH B 71 371 129 HOH HOH . F 4 HOH B 72 372 159 HOH HOH . F 4 HOH B 73 373 179 HOH HOH . F 4 HOH B 74 374 171 HOH HOH . F 4 HOH B 75 375 187 HOH HOH . F 4 HOH B 76 376 238 HOH HOH . F 4 HOH B 77 377 165 HOH HOH . F 4 HOH B 78 378 201 HOH HOH . F 4 HOH B 79 379 166 HOH HOH . F 4 HOH B 80 380 245 HOH HOH . F 4 HOH B 81 381 249 HOH HOH . F 4 HOH B 82 382 253 HOH HOH . F 4 HOH B 83 383 239 HOH HOH . F 4 HOH B 84 384 243 HOH HOH . F 4 HOH B 85 385 248 HOH HOH . F 4 HOH B 86 386 164 HOH HOH . F 4 HOH B 87 387 157 HOH HOH . F 4 HOH B 88 388 215 HOH HOH . F 4 HOH B 89 389 140 HOH HOH . F 4 HOH B 90 390 212 HOH HOH . F 4 HOH B 91 391 210 HOH HOH . F 4 HOH B 92 392 186 HOH HOH . F 4 HOH B 93 393 211 HOH HOH . F 4 HOH B 94 394 153 HOH HOH . F 4 HOH B 95 395 236 HOH HOH . F 4 HOH B 96 396 244 HOH HOH . F 4 HOH B 97 397 232 HOH HOH . F 4 HOH B 98 398 234 HOH HOH . F 4 HOH B 99 399 240 HOH HOH . F 4 HOH B 100 400 191 HOH HOH . F 4 HOH B 101 401 182 HOH HOH . F 4 HOH B 102 402 177 HOH HOH . F 4 HOH B 103 403 217 HOH HOH . F 4 HOH B 104 404 174 HOH HOH . F 4 HOH B 105 405 167 HOH HOH . F 4 HOH B 106 406 209 HOH HOH . F 4 HOH B 107 407 226 HOH HOH . F 4 HOH B 108 408 250 HOH HOH . F 4 HOH B 109 409 208 HOH HOH . F 4 HOH B 110 410 219 HOH HOH . F 4 HOH B 111 411 162 HOH HOH . F 4 HOH B 112 412 203 HOH HOH . F 4 HOH B 113 413 227 HOH HOH . F 4 HOH B 114 414 247 HOH HOH . F 4 HOH B 115 415 200 HOH HOH . F 4 HOH B 116 416 163 HOH HOH . F 4 HOH B 117 417 233 HOH HOH . F 4 HOH B 118 418 241 HOH HOH . F 4 HOH B 119 419 225 HOH HOH . F 4 HOH B 120 420 221 HOH HOH . F 4 HOH B 121 421 224 HOH HOH . F 4 HOH B 122 422 252 HOH HOH . F 4 HOH B 123 423 193 HOH HOH . F 4 HOH B 124 424 251 HOH HOH . F 4 HOH B 125 425 169 HOH HOH . G 4 HOH A 1 301 238 HOH HOH . G 4 HOH A 2 302 217 HOH HOH . G 4 HOH A 3 303 226 HOH HOH . G 4 HOH A 4 304 186 HOH HOH . G 4 HOH A 5 305 258 HOH HOH . G 4 HOH A 6 306 214 HOH HOH . G 4 HOH A 7 307 206 HOH HOH . G 4 HOH A 8 308 142 HOH HOH . G 4 HOH A 9 309 241 HOH HOH . G 4 HOH A 10 310 157 HOH HOH . G 4 HOH A 11 311 163 HOH HOH . G 4 HOH A 12 312 227 HOH HOH . G 4 HOH A 13 313 135 HOH HOH . G 4 HOH A 14 314 143 HOH HOH . G 4 HOH A 15 315 140 HOH HOH . G 4 HOH A 16 316 166 HOH HOH . G 4 HOH A 17 317 204 HOH HOH . G 4 HOH A 18 318 137 HOH HOH . G 4 HOH A 19 319 146 HOH HOH . G 4 HOH A 20 320 145 HOH HOH . G 4 HOH A 21 321 151 HOH HOH . G 4 HOH A 22 322 216 HOH HOH . G 4 HOH A 23 323 213 HOH HOH . G 4 HOH A 24 324 252 HOH HOH . G 4 HOH A 25 325 188 HOH HOH . G 4 HOH A 26 326 161 HOH HOH . G 4 HOH A 27 327 177 HOH HOH . G 4 HOH A 28 328 183 HOH HOH . G 4 HOH A 29 329 131 HOH HOH . G 4 HOH A 30 330 202 HOH HOH . G 4 HOH A 31 331 147 HOH HOH . G 4 HOH A 32 332 132 HOH HOH . G 4 HOH A 33 333 154 HOH HOH . G 4 HOH A 34 334 155 HOH HOH . G 4 HOH A 35 335 160 HOH HOH . G 4 HOH A 36 336 159 HOH HOH . G 4 HOH A 37 337 182 HOH HOH . G 4 HOH A 38 338 141 HOH HOH . G 4 HOH A 39 339 134 HOH HOH . G 4 HOH A 40 340 181 HOH HOH . G 4 HOH A 41 341 259 HOH HOH . G 4 HOH A 42 342 136 HOH HOH . G 4 HOH A 43 343 138 HOH HOH . G 4 HOH A 44 344 247 HOH HOH . G 4 HOH A 45 345 205 HOH HOH . G 4 HOH A 46 346 245 HOH HOH . G 4 HOH A 47 347 189 HOH HOH . G 4 HOH A 48 348 164 HOH HOH . G 4 HOH A 49 349 176 HOH HOH . G 4 HOH A 50 350 191 HOH HOH . G 4 HOH A 51 351 144 HOH HOH . G 4 HOH A 52 352 149 HOH HOH . G 4 HOH A 53 353 171 HOH HOH . G 4 HOH A 54 354 175 HOH HOH . G 4 HOH A 55 355 228 HOH HOH . G 4 HOH A 56 356 170 HOH HOH . G 4 HOH A 57 357 229 HOH HOH . G 4 HOH A 58 358 133 HOH HOH . G 4 HOH A 59 359 223 HOH HOH . G 4 HOH A 60 360 198 HOH HOH . G 4 HOH A 61 361 150 HOH HOH . G 4 HOH A 62 362 240 HOH HOH . G 4 HOH A 63 363 130 HOH HOH . G 4 HOH A 64 364 219 HOH HOH . G 4 HOH A 65 365 243 HOH HOH . G 4 HOH A 66 366 192 HOH HOH . G 4 HOH A 67 367 148 HOH HOH . G 4 HOH A 68 368 235 HOH HOH . G 4 HOH A 69 369 199 HOH HOH . G 4 HOH A 70 370 168 HOH HOH . G 4 HOH A 71 371 162 HOH HOH . G 4 HOH A 72 372 158 HOH HOH . G 4 HOH A 73 373 190 HOH HOH . G 4 HOH A 74 374 209 HOH HOH . G 4 HOH A 75 375 197 HOH HOH . G 4 HOH A 76 376 152 HOH HOH . G 4 HOH A 77 377 222 HOH HOH . G 4 HOH A 78 378 246 HOH HOH . G 4 HOH A 79 379 172 HOH HOH . G 4 HOH A 80 380 251 HOH HOH . G 4 HOH A 81 381 179 HOH HOH . G 4 HOH A 82 382 178 HOH HOH . G 4 HOH A 83 383 139 HOH HOH . G 4 HOH A 84 384 200 HOH HOH . G 4 HOH A 85 385 194 HOH HOH . G 4 HOH A 86 386 185 HOH HOH . G 4 HOH A 87 387 234 HOH HOH . G 4 HOH A 88 388 201 HOH HOH . G 4 HOH A 89 389 184 HOH HOH . G 4 HOH A 90 390 224 HOH HOH . G 4 HOH A 91 391 225 HOH HOH . G 4 HOH A 92 392 203 HOH HOH . G 4 HOH A 93 393 174 HOH HOH . G 4 HOH A 94 394 195 HOH HOH . G 4 HOH A 95 395 261 HOH HOH . G 4 HOH A 96 396 233 HOH HOH . G 4 HOH A 97 397 231 HOH HOH . G 4 HOH A 98 398 169 HOH HOH . G 4 HOH A 99 399 167 HOH HOH . G 4 HOH A 100 400 239 HOH HOH . G 4 HOH A 101 401 193 HOH HOH . G 4 HOH A 102 402 207 HOH HOH . G 4 HOH A 103 403 220 HOH HOH . G 4 HOH A 104 404 256 HOH HOH . G 4 HOH A 105 405 210 HOH HOH . G 4 HOH A 106 406 248 HOH HOH . G 4 HOH A 107 407 257 HOH HOH . G 4 HOH A 108 408 129 HOH HOH . G 4 HOH A 109 409 253 HOH HOH . G 4 HOH A 110 410 187 HOH HOH . G 4 HOH A 111 411 221 HOH HOH . G 4 HOH A 112 412 156 HOH HOH . G 4 HOH A 113 413 249 HOH HOH . G 4 HOH A 114 414 211 HOH HOH . G 4 HOH A 115 415 260 HOH HOH . G 4 HOH A 116 416 236 HOH HOH . G 4 HOH A 117 417 255 HOH HOH . G 4 HOH A 118 418 228 HOH HOH . G 4 HOH A 119 419 250 HOH HOH . G 4 HOH A 120 420 180 HOH HOH . G 4 HOH A 121 421 262 HOH HOH . G 4 HOH A 122 422 213 HOH HOH . G 4 HOH A 123 423 232 HOH HOH . G 4 HOH A 124 424 212 HOH HOH . G 4 HOH A 125 425 254 HOH HOH . G 4 HOH A 126 426 165 HOH HOH . G 4 HOH A 127 427 218 HOH HOH . G 4 HOH A 128 428 230 HOH HOH . G 4 HOH A 129 429 215 HOH HOH . G 4 HOH A 130 430 244 HOH HOH . G 4 HOH A 131 431 242 HOH HOH . G 4 HOH A 132 432 173 HOH HOH . G 4 HOH A 133 433 208 HOH HOH . G 4 HOH A 134 434 196 HOH HOH . G 4 HOH A 135 435 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 -29.267 -13.054 -30.353 1 15.84 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . E 2 -29.057 -13.686 -29.092 1 20.36 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . E 2 -30.693 -13.367 -30.786 1 30.88 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . E 2 -30.842 -13.19 -32.195 1 39.99 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 1090 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #