data_5I2K # _model_server_result.job_id C0GeZLzqehJ_V1zmtvMU1Q _model_server_result.datetime_utc '2024-11-24 00:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5I2K # _exptl.entry_id 5I2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I2K _cell.length_a 55.655 _cell.length_b 89.329 _cell.length_c 119.447 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 29 B CYS 29 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 45 B CYS 45 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 B SG CYS 237 B CYS 237 1_555 B SG CYS 291 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 167 n n N H GLY sing 168 n n N H2 GLY sing 169 n n CA C GLY sing 170 n n CA HA2 GLY sing 171 n n CA HA3 GLY sing 172 n n C O GLY doub 173 n n C OXT GLY sing 174 n n OXT HXT GLY sing 175 n n # _atom_sites.entry_id 5I2K _atom_sites.fract_transf_matrix[1][1] 0.017968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLU A 1 301 1 GLU GLU . D 4 GLY B 1 301 1 GLY GLY . E 5 67H B 1 302 1 67H DRG . F 6 HOH A 1 401 11 HOH HOH . F 6 HOH A 2 402 3 HOH HOH . F 6 HOH A 3 403 31 HOH HOH . F 6 HOH A 4 404 7 HOH HOH . F 6 HOH A 5 405 21 HOH HOH . F 6 HOH A 6 406 12 HOH HOH . F 6 HOH A 7 407 5 HOH HOH . F 6 HOH A 8 408 33 HOH HOH . F 6 HOH A 9 409 23 HOH HOH . F 6 HOH A 10 410 47 HOH HOH . F 6 HOH A 11 411 24 HOH HOH . F 6 HOH A 12 412 50 HOH HOH . F 6 HOH A 13 413 51 HOH HOH . F 6 HOH A 14 414 14 HOH HOH . F 6 HOH A 15 415 32 HOH HOH . F 6 HOH A 16 416 9 HOH HOH . F 6 HOH A 17 417 46 HOH HOH . F 6 HOH A 18 418 1 HOH HOH . F 6 HOH A 19 419 52 HOH HOH . F 6 HOH A 20 420 45 HOH HOH . F 6 HOH A 21 421 18 HOH HOH . F 6 HOH A 22 422 19 HOH HOH . F 6 HOH A 23 423 49 HOH HOH . F 6 HOH A 24 424 13 HOH HOH . F 6 HOH A 25 425 53 HOH HOH . F 6 HOH A 26 426 17 HOH HOH . F 6 HOH A 27 427 38 HOH HOH . F 6 HOH A 28 428 35 HOH HOH . F 6 HOH A 29 429 26 HOH HOH . G 6 HOH B 1 401 6 HOH HOH . G 6 HOH B 2 402 16 HOH HOH . G 6 HOH B 3 403 10 HOH HOH . G 6 HOH B 4 404 20 HOH HOH . G 6 HOH B 5 405 44 HOH HOH . G 6 HOH B 6 406 8 HOH HOH . G 6 HOH B 7 407 4 HOH HOH . G 6 HOH B 8 408 30 HOH HOH . G 6 HOH B 9 409 34 HOH HOH . G 6 HOH B 10 410 25 HOH HOH . G 6 HOH B 11 411 15 HOH HOH . G 6 HOH B 12 412 48 HOH HOH . G 6 HOH B 13 413 42 HOH HOH . G 6 HOH B 14 414 2 HOH HOH . G 6 HOH B 15 415 29 HOH HOH . G 6 HOH B 16 416 27 HOH HOH . G 6 HOH B 17 417 36 HOH HOH . G 6 HOH B 18 418 40 HOH HOH . G 6 HOH B 19 419 43 HOH HOH . G 6 HOH B 20 420 54 HOH HOH . G 6 HOH B 21 421 22 HOH HOH . G 6 HOH B 22 422 55 HOH HOH . G 6 HOH B 23 423 41 HOH HOH . G 6 HOH B 24 424 39 HOH HOH . G 6 HOH B 25 425 37 HOH HOH . G 6 HOH B 26 426 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . D 4 -9.074 -12.007 38.666 1 38.48 ? N GLY 301 B 1 HETATM 2 C CA GLY . . . D 4 -9.604 -10.901 39.447 1 39.62 ? CA GLY 301 B 1 HETATM 3 C C GLY . . . D 4 -9.025 -9.577 38.963 1 44.55 ? C GLY 301 B 1 HETATM 4 O O GLY . . . D 4 -8.638 -9.472 37.777 1 46.4 ? O GLY 301 B 1 HETATM 5 O OXT GLY . . . D 4 -8.925 -8.657 39.792 1 51.19 ? OXT GLY 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #