data_5I35 # _model_server_result.job_id xh_CUhKH_mKzQM7KZGEBtA _model_server_result.datetime_utc '2025-02-05 14:10:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 5I35 # _exptl.entry_id 5I35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.69 _cell.angle_gamma 90 _cell.entry_id 5I35 _cell.length_a 150.05 _cell.length_b 59.12 _cell.length_c 51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 25 A GLN 279 1_555 A N MSE 26 A MSE 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 26 A MSE 280 1_555 A N LEU 27 A LEU 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C PHE 52 A PHE 306 1_555 A N MSE 53 A MSE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 53 A MSE 307 1_555 A N PRO 54 A PRO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 A C GLN 57 A GLN 311 1_555 A N MSE 58 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 58 A MSE 312 1_555 A N MSE 59 A MSE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale7 A C MSE 59 A MSE 313 1_555 A N LYS 60 A LYS 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 A C ARG 94 A ARG 348 1_555 A N MSE 95 A MSE 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale9 A C MSE 95 A MSE 349 1_555 A N LYS 96 A LYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C ALA 102 A ALA 356 1_555 A N MSE 103 A MSE 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 A C MSE 103 A MSE 357 1_555 A N LYS 104 A LYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 A C LEU 121 A LEU 375 1_555 A N MSE 122 A MSE 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale13 A C MSE 122 A MSE 376 1_555 A N ALA 123 A ALA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C ASN 126 A ASN 380 1_555 A N MSE 127 A MSE 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C MSE 127 A MSE 381 1_555 A N SER 128 A SER 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 A C ASN 129 A ASN 383 1_555 A N MSE 130 A MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale17 A C MSE 130 A MSE 384 1_555 A N LEU 131 A LEU 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 A C PHE 230 A PHE 484 1_555 A N MSE 231 A MSE 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale19 A C MSE 231 A MSE 485 1_555 A N GLN 232 A GLN 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale20 A C GLU 289 A GLU 543 1_555 A N MSE 290 A MSE 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 A C MSE 290 A MSE 544 1_555 A N LYS 291 A LYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale22 A C VAL 300 A VAL 554 1_555 A N MSE 301 A MSE 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale23 A C MSE 301 A MSE 555 1_555 A N GLU 302 A GLU 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale24 A C VAL 339 A VAL 593 1_555 A N MSE 340 A MSE 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale25 A C MSE 340 A MSE 594 1_555 A N LEU 341 A LEU 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale26 A C LYS 358 A LYS 612 1_555 A N MSE 359 A MSE 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale27 A C MSE 359 A MSE 613 1_555 A N GLY 360 A GLY 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale28 A C ALA 377 A ALA 631 1_555 A N MSE 378 A MSE 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale29 A C MSE 378 A MSE 632 1_555 A N PHE 379 A PHE 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5I35 _atom_sites.fract_transf_matrix[1][1] 0.006664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 700 700 ANP ANP . C 3 HOH A 1 801 2 HOH HOH . C 3 HOH A 2 802 23 HOH HOH . C 3 HOH A 3 803 8 HOH HOH . C 3 HOH A 4 804 12 HOH HOH . C 3 HOH A 5 805 1 HOH HOH . C 3 HOH A 6 806 5 HOH HOH . C 3 HOH A 7 807 4 HOH HOH . C 3 HOH A 8 808 21 HOH HOH . C 3 HOH A 9 809 22 HOH HOH . C 3 HOH A 10 810 3 HOH HOH . C 3 HOH A 11 811 20 HOH HOH . C 3 HOH A 12 812 7 HOH HOH . C 3 HOH A 13 813 11 HOH HOH . C 3 HOH A 14 814 19 HOH HOH . C 3 HOH A 15 815 9 HOH HOH . C 3 HOH A 16 816 15 HOH HOH . C 3 HOH A 17 817 27 HOH HOH . C 3 HOH A 18 818 6 HOH HOH . C 3 HOH A 19 819 18 HOH HOH . C 3 HOH A 20 820 13 HOH HOH . C 3 HOH A 21 821 24 HOH HOH . C 3 HOH A 22 822 14 HOH HOH . C 3 HOH A 23 823 26 HOH HOH . C 3 HOH A 24 824 16 HOH HOH . C 3 HOH A 25 825 10 HOH HOH . C 3 HOH A 26 826 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 55.94 31.535 22.339 1 112.98 ? PG ANP 700 A 1 HETATM 2 O O1G ANP . . . B 2 56.018 30.98 20.93 1 96.9 ? O1G ANP 700 A 1 HETATM 3 O O2G ANP . . . B 2 57.161 32.412 22.6 1 96.46 ? O2G ANP 700 A 1 HETATM 4 O O3G ANP . . . B 2 54.48 31.955 22.654 1 94.48 ? O3G ANP 700 A 1 HETATM 5 P PB ANP . . . B 2 55.301 28.815 23.506 1 85.96 ? PB ANP 700 A 1 HETATM 6 O O1B ANP . . . B 2 54.036 29.127 22.647 1 87.59 ? O1B ANP 700 A 1 HETATM 7 O O2B ANP . . . B 2 55.006 28.484 24.949 1 73.27 ? O2B ANP 700 A 1 HETATM 8 N N3B ANP . . . B 2 56.279 30.272 23.525 1 93 ? N3B ANP 700 A 1 HETATM 9 P PA ANP . . . B 2 56.578 27.465 21.176 1 75.9 ? PA ANP 700 A 1 HETATM 10 O O1A ANP . . . B 2 55.878 26.346 20.38 1 76.13 ? O1A ANP 700 A 1 HETATM 11 O O2A ANP . . . B 2 56.8 28.808 20.526 1 67.36 ? O2A ANP 700 A 1 HETATM 12 O O3A ANP . . . B 2 56.173 27.611 22.779 1 82.97 ? O3A ANP 700 A 1 HETATM 13 O O5' ANP . . . B 2 58.107 26.95 21.357 1 75.07 ? O5' ANP 700 A 1 HETATM 14 C C5' ANP . . . B 2 59.074 27.788 22.035 1 71.85 ? C5' ANP 700 A 1 HETATM 15 C C4' ANP . . . B 2 60.407 27.818 21.285 1 69.17 ? C4' ANP 700 A 1 HETATM 16 O O4' ANP . . . B 2 60.969 26.473 21.151 1 74.92 ? O4' ANP 700 A 1 HETATM 17 C C3' ANP . . . B 2 60.325 28.33 19.861 1 72.76 ? C3' ANP 700 A 1 HETATM 18 O O3' ANP . . . B 2 60.108 29.739 19.758 1 69.16 ? O3' ANP 700 A 1 HETATM 19 C C2' ANP . . . B 2 61.644 27.776 19.301 1 75.02 ? C2' ANP 700 A 1 HETATM 20 O O2' ANP . . . B 2 62.771 28.629 19.684 1 73.5 ? O2' ANP 700 A 1 HETATM 21 C C1' ANP . . . B 2 61.629 26.336 19.895 1 73.69 ? C1' ANP 700 A 1 HETATM 22 N N9 ANP . . . B 2 60.914 25.326 19.01 1 71.6 ? N9 ANP 700 A 1 HETATM 23 C C8 ANP . . . B 2 59.644 24.825 19.113 1 71.64 ? C8 ANP 700 A 1 HETATM 24 N N7 ANP . . . B 2 59.336 23.971 18.064 1 69.63 ? N7 ANP 700 A 1 HETATM 25 C C5 ANP . . . B 2 60.472 23.906 17.308 1 64.72 ? C5 ANP 700 A 1 HETATM 26 C C6 ANP . . . B 2 60.894 23.223 16.06 1 65.3 ? C6 ANP 700 A 1 HETATM 27 N N6 ANP . . . B 2 60.032 22.396 15.427 1 62.41 ? N6 ANP 700 A 1 HETATM 28 N N1 ANP . . . B 2 62.157 23.454 15.576 1 69.2 ? N1 ANP 700 A 1 HETATM 29 C C2 ANP . . . B 2 63.04 24.29 16.201 1 63.31 ? C2 ANP 700 A 1 HETATM 30 N N3 ANP . . . B 2 62.7 24.955 17.328 1 65.54 ? N3 ANP 700 A 1 HETATM 31 C C4 ANP . . . B 2 61.475 24.802 17.906 1 63.36 ? C4 ANP 700 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #