data_5I3A # _model_server_result.job_id VJAMfezWKo_8IiFwIQhcGw _model_server_result.datetime_utc '2024-11-09 02:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5I3A # _exptl.entry_id 5I3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 110.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description benzene-1,4-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I3A _cell.length_a 69.648 _cell.length_b 74.36 _cell.length_c 120.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 39 A HIS 42 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc2 A NE2 HIS 57 A HIS 60 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 A NE2 HIS 201 A HIS 204 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A NE2 HIS 205 A HIS 208 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 A NE2 HIS 228 A HIS 231 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 C ZN ZN . A ZN 301 1_555 E O6 HQE . A HQE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 J O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 J O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 J O HOH . A HOH 401 3_655 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc10 J O HOH . A HOH 500 3_655 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc11 B NE2 HIS 10 B HIS 13 1_555 H ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc12 B NE2 HIS 57 B HIS 60 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 B NE2 HIS 201 B HIS 204 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc14 B NE2 HIS 205 B HIS 208 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc15 B NE2 HIS 228 B HIS 231 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc16 F ZN ZN . B ZN 301 1_555 I O3 HQE . B HQE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc17 F ZN ZN . B ZN 301 1_555 K O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc18 G ZN ZN . B ZN 302 1_555 K O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C6 H6 O2' _chem_comp.formula_weight 110.111 _chem_comp.id HQE _chem_comp.mon_nstd_flag . _chem_comp.name benzene-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 HQE doub 139 n y C5 C6 HQE sing 140 n y O6 C6 HQE sing 141 n n C4 C3 HQE sing 142 n y C6 C1 HQE doub 143 n y C3 O3 HQE sing 144 n n C3 C2 HQE doub 145 n y C1 C2 HQE sing 146 n y C1 H1 HQE sing 147 n n C2 H2 HQE sing 148 n n O3 H3 HQE sing 149 n n C4 H4 HQE sing 150 n n C5 H5 HQE sing 151 n n O6 H6 HQE sing 152 n n # _atom_sites.entry_id 5I3A _atom_sites.fract_transf_matrix[1][1] 0.014358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 1 ZN ZN . D 2 ZN A 1 302 2 ZN ZN . E 3 HQE A 1 303 2 HQE HQE . F 2 ZN B 1 301 3 ZN ZN . G 2 ZN B 1 302 4 ZN ZN . H 2 ZN B 1 303 1 ZN ZN . I 3 HQE B 1 304 3 HQE HQE . J 4 HOH A 1 401 75 HOH HOH . J 4 HOH A 2 402 128 HOH HOH . J 4 HOH A 3 403 230 HOH HOH . J 4 HOH A 4 404 225 HOH HOH . J 4 HOH A 5 405 73 HOH HOH . J 4 HOH A 6 406 126 HOH HOH . J 4 HOH A 7 407 276 HOH HOH . J 4 HOH A 8 408 36 HOH HOH . J 4 HOH A 9 409 62 HOH HOH . J 4 HOH A 10 410 108 HOH HOH . J 4 HOH A 11 411 46 HOH HOH . J 4 HOH A 12 412 262 HOH HOH . J 4 HOH A 13 413 72 HOH HOH . J 4 HOH A 14 414 1 HOH HOH . J 4 HOH A 15 415 47 HOH HOH . J 4 HOH A 16 416 25 HOH HOH . J 4 HOH A 17 417 250 HOH HOH . J 4 HOH A 18 418 191 HOH HOH . J 4 HOH A 19 419 94 HOH HOH . J 4 HOH A 20 420 35 HOH HOH . J 4 HOH A 21 421 147 HOH HOH . J 4 HOH A 22 422 59 HOH HOH . J 4 HOH A 23 423 33 HOH HOH . J 4 HOH A 24 424 136 HOH HOH . J 4 HOH A 25 425 233 HOH HOH . J 4 HOH A 26 426 219 HOH HOH . J 4 HOH A 27 427 76 HOH HOH . J 4 HOH A 28 428 43 HOH HOH . J 4 HOH A 29 429 171 HOH HOH . J 4 HOH A 30 430 21 HOH HOH . J 4 HOH A 31 431 169 HOH HOH . J 4 HOH A 32 432 228 HOH HOH . J 4 HOH A 33 433 251 HOH HOH . J 4 HOH A 34 434 15 HOH HOH . J 4 HOH A 35 435 143 HOH HOH . J 4 HOH A 36 436 104 HOH HOH . J 4 HOH A 37 437 40 HOH HOH . J 4 HOH A 38 438 224 HOH HOH . J 4 HOH A 39 439 65 HOH HOH . J 4 HOH A 40 440 170 HOH HOH . J 4 HOH A 41 441 110 HOH HOH . J 4 HOH A 42 442 227 HOH HOH . J 4 HOH A 43 443 50 HOH HOH . J 4 HOH A 44 444 112 HOH HOH . J 4 HOH A 45 445 60 HOH HOH . J 4 HOH A 46 446 24 HOH HOH . J 4 HOH A 47 447 194 HOH HOH . J 4 HOH A 48 448 124 HOH HOH . J 4 HOH A 49 449 52 HOH HOH . J 4 HOH A 50 450 260 HOH HOH . J 4 HOH A 51 451 10 HOH HOH . J 4 HOH A 52 452 77 HOH HOH . J 4 HOH A 53 453 57 HOH HOH . J 4 HOH A 54 454 205 HOH HOH . J 4 HOH A 55 455 16 HOH HOH . J 4 HOH A 56 456 176 HOH HOH . J 4 HOH A 57 457 131 HOH HOH . J 4 HOH A 58 458 41 HOH HOH . J 4 HOH A 59 459 240 HOH HOH . J 4 HOH A 60 460 88 HOH HOH . J 4 HOH A 61 461 4 HOH HOH . J 4 HOH A 62 462 31 HOH HOH . J 4 HOH A 63 463 280 HOH HOH . J 4 HOH A 64 464 19 HOH HOH . J 4 HOH A 65 465 105 HOH HOH . J 4 HOH A 66 466 189 HOH HOH . J 4 HOH A 67 467 27 HOH HOH . J 4 HOH A 68 468 84 HOH HOH . J 4 HOH A 69 469 239 HOH HOH . J 4 HOH A 70 470 184 HOH HOH . J 4 HOH A 71 471 236 HOH HOH . J 4 HOH A 72 472 20 HOH HOH . J 4 HOH A 73 473 32 HOH HOH . J 4 HOH A 74 474 5 HOH HOH . J 4 HOH A 75 475 156 HOH HOH . J 4 HOH A 76 476 216 HOH HOH . J 4 HOH A 77 477 129 HOH HOH . J 4 HOH A 78 478 23 HOH HOH . J 4 HOH A 79 479 34 HOH HOH . J 4 HOH A 80 480 265 HOH HOH . J 4 HOH A 81 481 17 HOH HOH . J 4 HOH A 82 482 247 HOH HOH . J 4 HOH A 83 483 81 HOH HOH . J 4 HOH A 84 484 159 HOH HOH . J 4 HOH A 85 485 218 HOH HOH . J 4 HOH A 86 486 70 HOH HOH . J 4 HOH A 87 487 172 HOH HOH . J 4 HOH A 88 488 199 HOH HOH . J 4 HOH A 89 489 150 HOH HOH . J 4 HOH A 90 490 55 HOH HOH . J 4 HOH A 91 491 142 HOH HOH . J 4 HOH A 92 492 6 HOH HOH . J 4 HOH A 93 493 174 HOH HOH . J 4 HOH A 94 494 98 HOH HOH . J 4 HOH A 95 495 82 HOH HOH . J 4 HOH A 96 496 137 HOH HOH . J 4 HOH A 97 497 237 HOH HOH . J 4 HOH A 98 498 93 HOH HOH . J 4 HOH A 99 499 274 HOH HOH . J 4 HOH A 100 500 148 HOH HOH . J 4 HOH A 101 501 118 HOH HOH . J 4 HOH A 102 502 254 HOH HOH . J 4 HOH A 103 503 229 HOH HOH . J 4 HOH A 104 504 203 HOH HOH . J 4 HOH A 105 505 173 HOH HOH . J 4 HOH A 106 506 272 HOH HOH . J 4 HOH A 107 507 140 HOH HOH . J 4 HOH A 108 508 214 HOH HOH . J 4 HOH A 109 509 231 HOH HOH . K 4 HOH B 1 401 133 HOH HOH . K 4 HOH B 2 402 149 HOH HOH . K 4 HOH B 3 403 71 HOH HOH . K 4 HOH B 4 404 221 HOH HOH . K 4 HOH B 5 405 78 HOH HOH . K 4 HOH B 6 406 30 HOH HOH . K 4 HOH B 7 407 238 HOH HOH . K 4 HOH B 8 408 100 HOH HOH . K 4 HOH B 9 409 2 HOH HOH . K 4 HOH B 10 410 123 HOH HOH . K 4 HOH B 11 411 253 HOH HOH . K 4 HOH B 12 412 9 HOH HOH . K 4 HOH B 13 413 117 HOH HOH . K 4 HOH B 14 414 85 HOH HOH . K 4 HOH B 15 415 18 HOH HOH . K 4 HOH B 16 416 102 HOH HOH . K 4 HOH B 17 417 29 HOH HOH . K 4 HOH B 18 418 267 HOH HOH . K 4 HOH B 19 419 119 HOH HOH . K 4 HOH B 20 420 42 HOH HOH . K 4 HOH B 21 421 66 HOH HOH . K 4 HOH B 22 422 107 HOH HOH . K 4 HOH B 23 423 180 HOH HOH . K 4 HOH B 24 424 80 HOH HOH . K 4 HOH B 25 425 37 HOH HOH . K 4 HOH B 26 426 115 HOH HOH . K 4 HOH B 27 427 135 HOH HOH . K 4 HOH B 28 428 67 HOH HOH . K 4 HOH B 29 429 139 HOH HOH . K 4 HOH B 30 430 92 HOH HOH . K 4 HOH B 31 431 83 HOH HOH . K 4 HOH B 32 432 192 HOH HOH . K 4 HOH B 33 433 151 HOH HOH . K 4 HOH B 34 434 48 HOH HOH . K 4 HOH B 35 435 257 HOH HOH . K 4 HOH B 36 436 145 HOH HOH . K 4 HOH B 37 437 7 HOH HOH . K 4 HOH B 38 438 74 HOH HOH . K 4 HOH B 39 439 26 HOH HOH . K 4 HOH B 40 440 44 HOH HOH . K 4 HOH B 41 441 235 HOH HOH . K 4 HOH B 42 442 279 HOH HOH . K 4 HOH B 43 443 258 HOH HOH . K 4 HOH B 44 444 197 HOH HOH . K 4 HOH B 45 445 96 HOH HOH . K 4 HOH B 46 446 58 HOH HOH . K 4 HOH B 47 447 95 HOH HOH . K 4 HOH B 48 448 11 HOH HOH . K 4 HOH B 49 449 201 HOH HOH . K 4 HOH B 50 450 153 HOH HOH . K 4 HOH B 51 451 64 HOH HOH . K 4 HOH B 52 452 211 HOH HOH . K 4 HOH B 53 453 99 HOH HOH . K 4 HOH B 54 454 54 HOH HOH . K 4 HOH B 55 455 101 HOH HOH . K 4 HOH B 56 456 193 HOH HOH . K 4 HOH B 57 457 249 HOH HOH . K 4 HOH B 58 458 51 HOH HOH . K 4 HOH B 59 459 22 HOH HOH . K 4 HOH B 60 460 12 HOH HOH . K 4 HOH B 61 461 114 HOH HOH . K 4 HOH B 62 462 13 HOH HOH . K 4 HOH B 63 463 261 HOH HOH . K 4 HOH B 64 464 61 HOH HOH . K 4 HOH B 65 465 195 HOH HOH . K 4 HOH B 66 466 97 HOH HOH . K 4 HOH B 67 467 208 HOH HOH . K 4 HOH B 68 468 210 HOH HOH . K 4 HOH B 69 469 164 HOH HOH . K 4 HOH B 70 470 179 HOH HOH . K 4 HOH B 71 471 121 HOH HOH . K 4 HOH B 72 472 14 HOH HOH . K 4 HOH B 73 473 125 HOH HOH . K 4 HOH B 74 474 86 HOH HOH . K 4 HOH B 75 475 196 HOH HOH . K 4 HOH B 76 476 266 HOH HOH . K 4 HOH B 77 477 45 HOH HOH . K 4 HOH B 78 478 155 HOH HOH . K 4 HOH B 79 479 111 HOH HOH . K 4 HOH B 80 480 130 HOH HOH . K 4 HOH B 81 481 198 HOH HOH . K 4 HOH B 82 482 79 HOH HOH . K 4 HOH B 83 483 53 HOH HOH . K 4 HOH B 84 484 185 HOH HOH . K 4 HOH B 85 485 162 HOH HOH . K 4 HOH B 86 486 68 HOH HOH . K 4 HOH B 87 487 255 HOH HOH . K 4 HOH B 88 488 167 HOH HOH . K 4 HOH B 89 489 245 HOH HOH . K 4 HOH B 90 490 158 HOH HOH . K 4 HOH B 91 491 132 HOH HOH . K 4 HOH B 92 492 178 HOH HOH . K 4 HOH B 93 493 113 HOH HOH . K 4 HOH B 94 494 182 HOH HOH . K 4 HOH B 95 495 152 HOH HOH . K 4 HOH B 96 496 252 HOH HOH . K 4 HOH B 97 497 157 HOH HOH . K 4 HOH B 98 498 217 HOH HOH . K 4 HOH B 99 499 181 HOH HOH . K 4 HOH B 100 500 212 HOH HOH . K 4 HOH B 101 501 188 HOH HOH . K 4 HOH B 102 502 273 HOH HOH . K 4 HOH B 103 503 223 HOH HOH . K 4 HOH B 104 504 222 HOH HOH . K 4 HOH B 105 505 103 HOH HOH . K 4 HOH B 106 506 177 HOH HOH . K 4 HOH B 107 507 187 HOH HOH . K 4 HOH B 108 508 244 HOH HOH . K 4 HOH B 109 509 242 HOH HOH . K 4 HOH B 110 510 141 HOH HOH . K 4 HOH B 111 511 275 HOH HOH . K 4 HOH B 112 512 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HQE . . . E 3 2.206 99.289 26.093 1 42.08 ? C1 HQE 303 A 1 HETATM 2 C C2 HQE . . . E 3 1.473 99.974 25.135 0.5 47.1 ? C2 HQE 303 A 1 HETATM 3 C C3 HQE . . . E 3 2.122 100.604 24.085 1 43.99 ? C3 HQE 303 A 1 HETATM 4 O O3 HQE . . . E 3 1.384 101.297 23.108 1 40.22 ? O3 HQE 303 A 1 HETATM 5 C C4 HQE . . . E 3 3.503 100.555 23.998 1 39.21 ? C4 HQE 303 A 1 HETATM 6 C C5 HQE . . . E 3 4.236 99.875 24.955 1 37.38 ? C5 HQE 303 A 1 HETATM 7 C C6 HQE . . . E 3 3.588 99.243 26.003 1 37.74 ? C6 HQE 303 A 1 HETATM 8 O O6 HQE . . . E 3 4.34 98.556 26.971 1 37.01 ? O6 HQE 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #