data_5I3C # _model_server_result.job_id jWNny2OiL0-iMClHj_YOKw _model_server_result.datetime_utc '2024-11-14 18:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5I3C # _exptl.entry_id 5I3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-HYROXYETHOXYMETHYLGUANINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5I3C _cell.length_a 120.03 _cell.length_b 120.03 _cell.length_c 238.141 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 60.015 -103.949029 39.690167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C8 H11 N5 O3' _chem_comp.formula_weight 225.205 _chem_comp.id AC2 _chem_comp.mon_nstd_flag . _chem_comp.name 9-HYROXYETHOXYMETHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' O3' AC2 sing 1 n n C3' C2' AC2 sing 2 n n C3' "H3'1" AC2 sing 3 n n C3' "H3'2" AC2 sing 4 n n O3' "HO'3" AC2 sing 5 n n C2' O1' AC2 sing 6 n n C2' "H2'1" AC2 sing 7 n n C2' "H2'2" AC2 sing 8 n n O1' C1' AC2 sing 9 n n C1' N9 AC2 sing 10 n n C1' "H1'1" AC2 sing 11 n n C1' "H1'2" AC2 sing 12 n n N9 C8 AC2 sing 13 n y N9 C4 AC2 sing 14 n y C8 N7 AC2 doub 15 n y C8 H8 AC2 sing 16 n n N7 C5 AC2 sing 17 n y C5 C6 AC2 sing 18 n n C5 C4 AC2 doub 19 n y C6 O6 AC2 doub 20 n n C6 N1 AC2 sing 21 n n N1 C2 AC2 sing 22 n n N1 HN1 AC2 sing 23 n n C2 N2 AC2 sing 24 n n C2 N3 AC2 doub 25 n n N2 HN21 AC2 sing 26 n n N2 HN22 AC2 sing 27 n n N3 C4 AC2 sing 28 n n # _atom_sites.entry_id 5I3C _atom_sites.fract_transf_matrix[1][1] 0.008331 _atom_sites.fract_transf_matrix[1][2] 0.00481 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AC2 A 1 301 1 AC2 AC2 . E 3 SO4 A 1 302 1 SO4 SO4 . F 2 AC2 B 1 301 2 AC2 AC2 . G 3 SO4 B 1 302 2 SO4 SO4 . H 2 AC2 C 1 301 3 AC2 AC2 . I 3 SO4 C 1 302 3 SO4 SO4 . J 3 SO4 C 1 303 4 SO4 SO4 . K 3 SO4 C 1 304 5 SO4 SO4 . L 4 HOH A 1 401 96 HOH HOH . L 4 HOH A 2 402 90 HOH HOH . L 4 HOH A 3 403 49 HOH HOH . L 4 HOH A 4 404 50 HOH HOH . L 4 HOH A 5 405 98 HOH HOH . L 4 HOH A 6 406 18 HOH HOH . L 4 HOH A 7 407 13 HOH HOH . L 4 HOH A 8 408 138 HOH HOH . L 4 HOH A 9 409 82 HOH HOH . L 4 HOH A 10 410 68 HOH HOH . L 4 HOH A 11 411 9 HOH HOH . L 4 HOH A 12 412 60 HOH HOH . L 4 HOH A 13 413 101 HOH HOH . L 4 HOH A 14 414 33 HOH HOH . L 4 HOH A 15 415 104 HOH HOH . L 4 HOH A 16 416 11 HOH HOH . L 4 HOH A 17 417 95 HOH HOH . L 4 HOH A 18 418 59 HOH HOH . L 4 HOH A 19 419 88 HOH HOH . L 4 HOH A 20 420 137 HOH HOH . L 4 HOH A 21 421 103 HOH HOH . L 4 HOH A 22 422 91 HOH HOH . L 4 HOH A 23 423 97 HOH HOH . L 4 HOH A 24 424 92 HOH HOH . L 4 HOH A 25 425 136 HOH HOH . L 4 HOH A 26 426 8 HOH HOH . L 4 HOH A 27 427 100 HOH HOH . L 4 HOH A 28 428 12 HOH HOH . L 4 HOH A 29 429 99 HOH HOH . L 4 HOH A 30 430 15 HOH HOH . L 4 HOH A 31 431 5 HOH HOH . L 4 HOH A 32 432 83 HOH HOH . L 4 HOH A 33 433 25 HOH HOH . L 4 HOH A 34 434 81 HOH HOH . L 4 HOH A 35 435 135 HOH HOH . L 4 HOH A 36 436 93 HOH HOH . L 4 HOH A 37 437 133 HOH HOH . L 4 HOH A 38 438 2 HOH HOH . L 4 HOH A 39 439 94 HOH HOH . L 4 HOH A 40 440 134 HOH HOH . L 4 HOH A 41 441 85 HOH HOH . L 4 HOH A 42 442 102 HOH HOH . L 4 HOH A 43 443 87 HOH HOH . L 4 HOH A 44 444 55 HOH HOH . M 4 HOH B 1 401 17 HOH HOH . M 4 HOH B 2 402 105 HOH HOH . M 4 HOH B 3 403 42 HOH HOH . M 4 HOH B 4 404 112 HOH HOH . M 4 HOH B 5 405 71 HOH HOH . M 4 HOH B 6 406 69 HOH HOH . M 4 HOH B 7 407 74 HOH HOH . M 4 HOH B 8 408 113 HOH HOH . M 4 HOH B 9 409 140 HOH HOH . M 4 HOH B 10 410 48 HOH HOH . M 4 HOH B 11 411 72 HOH HOH . M 4 HOH B 12 412 109 HOH HOH . M 4 HOH B 13 413 63 HOH HOH . M 4 HOH B 14 414 62 HOH HOH . M 4 HOH B 15 415 107 HOH HOH . M 4 HOH B 16 416 84 HOH HOH . M 4 HOH B 17 417 58 HOH HOH . M 4 HOH B 18 418 78 HOH HOH . M 4 HOH B 19 419 46 HOH HOH . M 4 HOH B 20 420 111 HOH HOH . M 4 HOH B 21 421 45 HOH HOH . M 4 HOH B 22 422 115 HOH HOH . M 4 HOH B 23 423 26 HOH HOH . M 4 HOH B 24 424 32 HOH HOH . M 4 HOH B 25 425 34 HOH HOH . M 4 HOH B 26 426 73 HOH HOH . M 4 HOH B 27 427 24 HOH HOH . M 4 HOH B 28 428 80 HOH HOH . M 4 HOH B 29 429 4 HOH HOH . M 4 HOH B 30 430 1 HOH HOH . M 4 HOH B 31 431 89 HOH HOH . M 4 HOH B 32 432 108 HOH HOH . M 4 HOH B 33 433 66 HOH HOH . M 4 HOH B 34 434 106 HOH HOH . M 4 HOH B 35 435 110 HOH HOH . N 4 HOH C 1 401 132 HOH HOH . N 4 HOH C 2 402 126 HOH HOH . N 4 HOH C 3 403 119 HOH HOH . N 4 HOH C 4 404 123 HOH HOH . N 4 HOH C 5 405 16 HOH HOH . N 4 HOH C 6 406 54 HOH HOH . N 4 HOH C 7 407 127 HOH HOH . N 4 HOH C 8 408 64 HOH HOH . N 4 HOH C 9 409 116 HOH HOH . N 4 HOH C 10 410 52 HOH HOH . N 4 HOH C 11 411 31 HOH HOH . N 4 HOH C 12 412 124 HOH HOH . N 4 HOH C 13 413 65 HOH HOH . N 4 HOH C 14 414 118 HOH HOH . N 4 HOH C 15 415 129 HOH HOH . N 4 HOH C 16 416 70 HOH HOH . N 4 HOH C 17 417 22 HOH HOH . N 4 HOH C 18 418 57 HOH HOH . N 4 HOH C 19 419 39 HOH HOH . N 4 HOH C 20 420 128 HOH HOH . N 4 HOH C 21 421 130 HOH HOH . N 4 HOH C 22 422 23 HOH HOH . N 4 HOH C 23 423 131 HOH HOH . N 4 HOH C 24 424 28 HOH HOH . N 4 HOH C 25 425 10 HOH HOH . N 4 HOH C 26 426 14 HOH HOH . N 4 HOH C 27 427 56 HOH HOH . N 4 HOH C 28 428 41 HOH HOH . N 4 HOH C 29 429 35 HOH HOH . N 4 HOH C 30 430 29 HOH HOH . N 4 HOH C 31 431 76 HOH HOH . N 4 HOH C 32 432 36 HOH HOH . N 4 HOH C 33 433 75 HOH HOH . N 4 HOH C 34 434 44 HOH HOH . N 4 HOH C 35 435 19 HOH HOH . N 4 HOH C 36 436 51 HOH HOH . N 4 HOH C 37 437 67 HOH HOH . N 4 HOH C 38 438 117 HOH HOH . N 4 HOH C 39 439 27 HOH HOH . N 4 HOH C 40 440 37 HOH HOH . N 4 HOH C 41 441 30 HOH HOH . N 4 HOH C 42 442 6 HOH HOH . N 4 HOH C 43 443 53 HOH HOH . N 4 HOH C 44 444 61 HOH HOH . N 4 HOH C 45 445 21 HOH HOH . N 4 HOH C 46 446 125 HOH HOH . N 4 HOH C 47 447 77 HOH HOH . N 4 HOH C 48 448 139 HOH HOH . N 4 HOH C 49 449 3 HOH HOH . N 4 HOH C 50 450 43 HOH HOH . N 4 HOH C 51 451 122 HOH HOH . N 4 HOH C 52 452 79 HOH HOH . N 4 HOH C 53 453 47 HOH HOH . N 4 HOH C 54 454 120 HOH HOH . N 4 HOH C 55 455 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' AC2 . A . F 2 50.197 -17.679 9.81 0.5 22.53 ? C3' AC2 301 B 1 HETATM 2 C C3' AC2 . B . F 2 51.735 -20.138 9.501 0.5 32.62 ? C3' AC2 301 B 1 HETATM 3 O O3' AC2 . A . F 2 49.072 -16.835 9.99 0.5 21.48 ? O3' AC2 301 B 1 HETATM 4 O O3' AC2 . B . F 2 52.105 -20.442 8.161 0.5 28.46 ? O3' AC2 301 B 1 HETATM 5 C C2' AC2 . A . F 2 50.228 -18.685 10.957 0.5 23.36 ? C2' AC2 301 B 1 HETATM 6 C C2' AC2 . B . F 2 50.879 -18.874 9.516 0.5 35.61 ? C2' AC2 301 B 1 HETATM 7 O O1' AC2 . A . F 2 51.431 -19.461 10.914 0.5 24.41 ? O1' AC2 301 B 1 HETATM 8 O O1' AC2 . B . F 2 51.406 -17.924 10.44 0.5 38.92 ? O1' AC2 301 B 1 HETATM 9 C C1' AC2 . A . F 2 52.37 -19.105 11.935 0.5 24.9 ? C1' AC2 301 B 1 HETATM 10 C C1' AC2 . B . F 2 51.876 -18.566 11.629 0.5 41.51 ? C1' AC2 301 B 1 HETATM 11 N N9 AC2 . A . F 2 51.701 -18.466 13.071 0.5 25.67 ? N9 AC2 301 B 1 HETATM 12 N N9 AC2 . B . F 2 51.176 -18.031 12.8 0.5 43.56 ? N9 AC2 301 B 1 HETATM 13 C C8 AC2 . A . F 2 51.916 -17.202 13.496 0.5 25.6 ? C8 AC2 301 B 1 HETATM 14 C C8 AC2 . B . F 2 51.148 -16.733 13.172 0.5 44.83 ? C8 AC2 301 B 1 HETATM 15 N N7 AC2 . A . F 2 51.134 -16.898 14.555 0.5 25.14 ? N7 AC2 301 B 1 HETATM 16 N N7 AC2 . B . F 2 50.409 -16.573 14.298 0.5 44.38 ? N7 AC2 301 B 1 HETATM 17 C C5 AC2 . A . F 2 50.387 -17.979 14.815 0.5 25.81 ? C5 AC2 301 B 1 HETATM 18 C C5 AC2 . B . F 2 49.955 -17.782 14.663 0.5 43.6 ? C5 AC2 301 B 1 HETATM 19 C C6 AC2 . A . F 2 49.355 -18.321 15.805 0.5 26.1 ? C6 AC2 301 B 1 HETATM 20 C C6 AC2 . B . F 2 49.115 -18.307 15.753 0.5 43.98 ? C6 AC2 301 B 1 HETATM 21 O O6 AC2 . A . F 2 49.01 -17.469 16.647 0.5 26.28 ? O6 AC2 301 B 1 HETATM 22 O O6 AC2 . B . F 2 48.66 -17.526 16.613 0.5 44.76 ? O6 AC2 301 B 1 HETATM 23 N N1 AC2 . A . F 2 48.822 -19.548 15.765 0.5 26.15 ? N1 AC2 301 B 1 HETATM 24 N N1 AC2 . B . F 2 48.87 -19.623 15.79 0.5 43.56 ? N1 AC2 301 B 1 HETATM 25 C C2 AC2 . A . F 2 49.204 -20.455 14.849 0.5 26.05 ? C2 AC2 301 B 1 HETATM 26 C C2 AC2 . B . F 2 49.361 -20.461 14.858 0.5 43.29 ? C2 AC2 301 B 1 HETATM 27 N N2 AC2 . A . F 2 48.624 -21.679 14.858 0.5 25.76 ? N2 AC2 301 B 1 HETATM 28 N N2 AC2 . B . F 2 49.067 -21.781 14.955 0.5 42.82 ? N2 AC2 301 B 1 HETATM 29 N N3 AC2 . A . F 2 50.144 -20.207 13.905 0.5 25.61 ? N3 AC2 301 B 1 HETATM 30 N N3 AC2 . B . F 2 50.135 -20.048 13.823 0.5 42.75 ? N3 AC2 301 B 1 HETATM 31 C C4 AC2 . A . F 2 50.758 -19.011 13.843 0.5 25.76 ? C4 AC2 301 B 1 HETATM 32 C C4 AC2 . B . F 2 50.458 -18.743 13.676 0.5 43.6 ? C4 AC2 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #