data_5I3C # _model_server_result.job_id L7Q7-pc_PfkD3-8uQ10Jqw _model_server_result.datetime_utc '2024-11-14 18:06:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5I3C # _exptl.entry_id 5I3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-HYROXYETHOXYMETHYLGUANINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5I3C _cell.length_a 120.03 _cell.length_b 120.03 _cell.length_c 238.141 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 60.015 -103.949029 39.690167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C8 H11 N5 O3' _chem_comp.formula_weight 225.205 _chem_comp.id AC2 _chem_comp.mon_nstd_flag . _chem_comp.name 9-HYROXYETHOXYMETHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' O3' AC2 sing 1 n n C3' C2' AC2 sing 2 n n C3' "H3'1" AC2 sing 3 n n C3' "H3'2" AC2 sing 4 n n O3' "HO'3" AC2 sing 5 n n C2' O1' AC2 sing 6 n n C2' "H2'1" AC2 sing 7 n n C2' "H2'2" AC2 sing 8 n n O1' C1' AC2 sing 9 n n C1' N9 AC2 sing 10 n n C1' "H1'1" AC2 sing 11 n n C1' "H1'2" AC2 sing 12 n n N9 C8 AC2 sing 13 n y N9 C4 AC2 sing 14 n y C8 N7 AC2 doub 15 n y C8 H8 AC2 sing 16 n n N7 C5 AC2 sing 17 n y C5 C6 AC2 sing 18 n n C5 C4 AC2 doub 19 n y C6 O6 AC2 doub 20 n n C6 N1 AC2 sing 21 n n N1 C2 AC2 sing 22 n n N1 HN1 AC2 sing 23 n n C2 N2 AC2 sing 24 n n C2 N3 AC2 doub 25 n n N2 HN21 AC2 sing 26 n n N2 HN22 AC2 sing 27 n n N3 C4 AC2 sing 28 n n # _atom_sites.entry_id 5I3C _atom_sites.fract_transf_matrix[1][1] 0.008331 _atom_sites.fract_transf_matrix[1][2] 0.00481 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AC2 A 1 301 1 AC2 AC2 . E 3 SO4 A 1 302 1 SO4 SO4 . F 2 AC2 B 1 301 2 AC2 AC2 . G 3 SO4 B 1 302 2 SO4 SO4 . H 2 AC2 C 1 301 3 AC2 AC2 . I 3 SO4 C 1 302 3 SO4 SO4 . J 3 SO4 C 1 303 4 SO4 SO4 . K 3 SO4 C 1 304 5 SO4 SO4 . L 4 HOH A 1 401 96 HOH HOH . L 4 HOH A 2 402 90 HOH HOH . L 4 HOH A 3 403 49 HOH HOH . L 4 HOH A 4 404 50 HOH HOH . L 4 HOH A 5 405 98 HOH HOH . L 4 HOH A 6 406 18 HOH HOH . L 4 HOH A 7 407 13 HOH HOH . L 4 HOH A 8 408 138 HOH HOH . L 4 HOH A 9 409 82 HOH HOH . L 4 HOH A 10 410 68 HOH HOH . L 4 HOH A 11 411 9 HOH HOH . L 4 HOH A 12 412 60 HOH HOH . L 4 HOH A 13 413 101 HOH HOH . L 4 HOH A 14 414 33 HOH HOH . L 4 HOH A 15 415 104 HOH HOH . L 4 HOH A 16 416 11 HOH HOH . L 4 HOH A 17 417 95 HOH HOH . L 4 HOH A 18 418 59 HOH HOH . L 4 HOH A 19 419 88 HOH HOH . L 4 HOH A 20 420 137 HOH HOH . L 4 HOH A 21 421 103 HOH HOH . L 4 HOH A 22 422 91 HOH HOH . L 4 HOH A 23 423 97 HOH HOH . L 4 HOH A 24 424 92 HOH HOH . L 4 HOH A 25 425 136 HOH HOH . L 4 HOH A 26 426 8 HOH HOH . L 4 HOH A 27 427 100 HOH HOH . L 4 HOH A 28 428 12 HOH HOH . L 4 HOH A 29 429 99 HOH HOH . L 4 HOH A 30 430 15 HOH HOH . L 4 HOH A 31 431 5 HOH HOH . L 4 HOH A 32 432 83 HOH HOH . L 4 HOH A 33 433 25 HOH HOH . L 4 HOH A 34 434 81 HOH HOH . L 4 HOH A 35 435 135 HOH HOH . L 4 HOH A 36 436 93 HOH HOH . L 4 HOH A 37 437 133 HOH HOH . L 4 HOH A 38 438 2 HOH HOH . L 4 HOH A 39 439 94 HOH HOH . L 4 HOH A 40 440 134 HOH HOH . L 4 HOH A 41 441 85 HOH HOH . L 4 HOH A 42 442 102 HOH HOH . L 4 HOH A 43 443 87 HOH HOH . L 4 HOH A 44 444 55 HOH HOH . M 4 HOH B 1 401 17 HOH HOH . M 4 HOH B 2 402 105 HOH HOH . M 4 HOH B 3 403 42 HOH HOH . M 4 HOH B 4 404 112 HOH HOH . M 4 HOH B 5 405 71 HOH HOH . M 4 HOH B 6 406 69 HOH HOH . M 4 HOH B 7 407 74 HOH HOH . M 4 HOH B 8 408 113 HOH HOH . M 4 HOH B 9 409 140 HOH HOH . M 4 HOH B 10 410 48 HOH HOH . M 4 HOH B 11 411 72 HOH HOH . M 4 HOH B 12 412 109 HOH HOH . M 4 HOH B 13 413 63 HOH HOH . M 4 HOH B 14 414 62 HOH HOH . M 4 HOH B 15 415 107 HOH HOH . M 4 HOH B 16 416 84 HOH HOH . M 4 HOH B 17 417 58 HOH HOH . M 4 HOH B 18 418 78 HOH HOH . M 4 HOH B 19 419 46 HOH HOH . M 4 HOH B 20 420 111 HOH HOH . M 4 HOH B 21 421 45 HOH HOH . M 4 HOH B 22 422 115 HOH HOH . M 4 HOH B 23 423 26 HOH HOH . M 4 HOH B 24 424 32 HOH HOH . M 4 HOH B 25 425 34 HOH HOH . M 4 HOH B 26 426 73 HOH HOH . M 4 HOH B 27 427 24 HOH HOH . M 4 HOH B 28 428 80 HOH HOH . M 4 HOH B 29 429 4 HOH HOH . M 4 HOH B 30 430 1 HOH HOH . M 4 HOH B 31 431 89 HOH HOH . M 4 HOH B 32 432 108 HOH HOH . M 4 HOH B 33 433 66 HOH HOH . M 4 HOH B 34 434 106 HOH HOH . M 4 HOH B 35 435 110 HOH HOH . N 4 HOH C 1 401 132 HOH HOH . N 4 HOH C 2 402 126 HOH HOH . N 4 HOH C 3 403 119 HOH HOH . N 4 HOH C 4 404 123 HOH HOH . N 4 HOH C 5 405 16 HOH HOH . N 4 HOH C 6 406 54 HOH HOH . N 4 HOH C 7 407 127 HOH HOH . N 4 HOH C 8 408 64 HOH HOH . N 4 HOH C 9 409 116 HOH HOH . N 4 HOH C 10 410 52 HOH HOH . N 4 HOH C 11 411 31 HOH HOH . N 4 HOH C 12 412 124 HOH HOH . N 4 HOH C 13 413 65 HOH HOH . N 4 HOH C 14 414 118 HOH HOH . N 4 HOH C 15 415 129 HOH HOH . N 4 HOH C 16 416 70 HOH HOH . N 4 HOH C 17 417 22 HOH HOH . N 4 HOH C 18 418 57 HOH HOH . N 4 HOH C 19 419 39 HOH HOH . N 4 HOH C 20 420 128 HOH HOH . N 4 HOH C 21 421 130 HOH HOH . N 4 HOH C 22 422 23 HOH HOH . N 4 HOH C 23 423 131 HOH HOH . N 4 HOH C 24 424 28 HOH HOH . N 4 HOH C 25 425 10 HOH HOH . N 4 HOH C 26 426 14 HOH HOH . N 4 HOH C 27 427 56 HOH HOH . N 4 HOH C 28 428 41 HOH HOH . N 4 HOH C 29 429 35 HOH HOH . N 4 HOH C 30 430 29 HOH HOH . N 4 HOH C 31 431 76 HOH HOH . N 4 HOH C 32 432 36 HOH HOH . N 4 HOH C 33 433 75 HOH HOH . N 4 HOH C 34 434 44 HOH HOH . N 4 HOH C 35 435 19 HOH HOH . N 4 HOH C 36 436 51 HOH HOH . N 4 HOH C 37 437 67 HOH HOH . N 4 HOH C 38 438 117 HOH HOH . N 4 HOH C 39 439 27 HOH HOH . N 4 HOH C 40 440 37 HOH HOH . N 4 HOH C 41 441 30 HOH HOH . N 4 HOH C 42 442 6 HOH HOH . N 4 HOH C 43 443 53 HOH HOH . N 4 HOH C 44 444 61 HOH HOH . N 4 HOH C 45 445 21 HOH HOH . N 4 HOH C 46 446 125 HOH HOH . N 4 HOH C 47 447 77 HOH HOH . N 4 HOH C 48 448 139 HOH HOH . N 4 HOH C 49 449 3 HOH HOH . N 4 HOH C 50 450 43 HOH HOH . N 4 HOH C 51 451 122 HOH HOH . N 4 HOH C 52 452 79 HOH HOH . N 4 HOH C 53 453 47 HOH HOH . N 4 HOH C 54 454 120 HOH HOH . N 4 HOH C 55 455 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' AC2 . A . H 2 17.983 -47.757 21.906 0.5 31.95 ? C3' AC2 301 C 1 HETATM 2 C C3' AC2 . B . H 2 18.448 -48.233 19.41 0.5 30.87 ? C3' AC2 301 C 1 HETATM 3 O O3' AC2 . A . H 2 16.629 -48.119 22.218 0.5 28.45 ? O3' AC2 301 C 1 HETATM 4 O O3' AC2 . B . H 2 18.549 -49.369 18.55 0.5 25.57 ? O3' AC2 301 C 1 HETATM 5 C C2' AC2 . A . H 2 18.337 -47.972 20.432 0.5 33.12 ? C2' AC2 301 C 1 HETATM 6 C C2' AC2 . B . H 2 17.387 -48.416 20.516 0.5 32.56 ? C2' AC2 301 C 1 HETATM 7 O O1' AC2 . A . H 2 17.699 -47.004 19.585 0.5 33.79 ? O1' AC2 301 C 1 HETATM 8 O O1' AC2 . B . H 2 16.632 -47.207 20.701 0.5 34.6 ? O1' AC2 301 C 1 HETATM 9 C C1' AC2 . A . H 2 18.514 -45.898 19.226 0.5 31.51 ? C1' AC2 301 C 1 HETATM 10 C C1' AC2 . B . H 2 17.224 -46.091 19.998 0.5 36.59 ? C1' AC2 301 C 1 HETATM 11 N N9 AC2 . A . H 2 18.142 -44.779 20.09 0.5 31.56 ? N9 AC2 301 C 1 HETATM 12 N N9 AC2 . B . H 2 17.18 -44.852 20.788 0.5 37.87 ? N9 AC2 301 C 1 HETATM 13 C C8 AC2 . A . H 2 16.915 -44.229 20.153 0.5 30.9 ? C8 AC2 301 C 1 HETATM 14 C C8 AC2 . B . H 2 16.069 -44.147 21.105 0.5 38.75 ? C8 AC2 301 C 1 HETATM 15 N N7 AC2 . A . H 2 16.871 -43.213 21.047 0.5 31.14 ? N7 AC2 301 C 1 HETATM 16 N N7 AC2 . B . H 2 16.386 -43.051 21.851 0.5 39.73 ? N7 AC2 301 C 1 HETATM 17 C C5 AC2 . A . H 2 18.099 -43.109 21.593 0.5 31.82 ? C5 AC2 301 C 1 HETATM 18 C C5 AC2 . B . H 2 17.73 -43.043 22.025 0.5 39.32 ? C5 AC2 301 C 1 HETATM 19 C C6 AC2 . A . H 2 18.74 -42.241 22.614 0.5 32.26 ? C6 AC2 301 C 1 HETATM 20 C C6 AC2 . B . H 2 18.734 -42.175 22.711 0.5 39.65 ? C6 AC2 301 C 1 HETATM 21 O O6 AC2 . A . H 2 18.09 -41.341 23.191 0.5 32.69 ? O6 AC2 301 C 1 HETATM 22 O O6 AC2 . B . H 2 18.387 -41.145 23.335 0.5 40.47 ? O6 AC2 301 C 1 HETATM 23 N N1 AC2 . A . H 2 20.033 -42.447 22.892 0.5 31.36 ? N1 AC2 301 C 1 HETATM 24 N N1 AC2 . B . H 2 20.031 -42.518 22.646 0.5 37.97 ? N1 AC2 301 C 1 HETATM 25 C C2 AC2 . A . H 2 20.736 -43.411 22.283 0.5 31.35 ? C2 AC2 301 C 1 HETATM 26 C C2 AC2 . B . H 2 20.431 -43.616 21.984 0.5 37.73 ? C2 AC2 301 C 1 HETATM 27 N N2 AC2 . A . H 2 22.029 -43.535 22.643 0.5 32.97 ? N2 AC2 301 C 1 HETATM 28 N N2 AC2 . B . H 2 21.749 -43.885 21.972 0.5 38.66 ? N2 AC2 301 C 1 HETATM 29 N N3 AC2 . A . H 2 20.233 -44.248 21.338 0.5 30.46 ? N3 AC2 301 C 1 HETATM 30 N N3 AC2 . B . H 2 19.589 -44.459 21.333 0.5 37.58 ? N3 AC2 301 C 1 HETATM 31 C C4 AC2 . A . H 2 18.937 -44.145 20.961 0.5 31.44 ? C4 AC2 301 C 1 HETATM 32 C C4 AC2 . B . H 2 18.247 -44.23 21.315 0.5 38.86 ? C4 AC2 301 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #