data_5I3L # _model_server_result.job_id g0UaVzeyf-r5JFiUL4QLVQ _model_server_result.datetime_utc '2024-11-04 23:03:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1013}' # _entry.id 5I3L # _exptl.entry_id 5I3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight ? _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 32 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I3L _cell.length_a 99.822 _cell.length_b 121.641 _cell.length_c 56.446 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 CA N N ? 5 DA N N ? 5 FA N N ? 5 GA N N ? 5 HA N N ? 5 IA N N ? 5 JA N N ? 5 KA N N ? 5 LA N N ? 5 MA N N ? 5 NA N N ? 5 OA N N ? 5 PA N N ? 5 QA N N ? 5 RA N N ? 5 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 13 C GLY 13 1_555 C N ALY 14 C ALY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C ALY 14 C ALY 14 1_555 C N ALA 15 C ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 9 A CYS 262 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 A SG CYS 12 A CYS 265 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A SG CYS 31 A CYS 284 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A SG CYS 34 A CYS 287 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 A ND1 HIS 39 A HIS 292 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 A SG CYS 42 A CYS 295 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 A SG CYS 60 A CYS 313 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A SG CYS 63 A CYS 316 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 A SG CYS 66 A CYS 319 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc10 A SG CYS 69 A CYS 322 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 A SG CYS 81 A CYS 334 1_555 G ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc12 A SG CYS 84 A CYS 337 1_555 G ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 A ND1 HIS 89 A HIS 342 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc14 A SG CYS 92 A CYS 345 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc15 A SG CYS 107 A CYS 360 1_555 G ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 A SG CYS 110 A CYS 363 1_555 G ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc17 B SG CYS 9 B CYS 262 1_555 Y ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc18 B SG CYS 12 B CYS 265 1_555 Y ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc19 B SG CYS 31 B CYS 284 1_555 Z ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc20 B SG CYS 34 B CYS 287 1_555 Z ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc21 B ND1 HIS 39 B HIS 292 1_555 Y ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc22 B SG CYS 42 B CYS 295 1_555 Y ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc23 B SG CYS 60 B CYS 313 1_555 Z ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc24 B SG CYS 63 B CYS 316 1_555 Z ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc25 B SG CYS 66 B CYS 319 1_555 AA ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc26 B SG CYS 69 B CYS 322 1_555 AA ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc27 B O PHE 80 B PHE 333 1_555 EA NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc28 B SG CYS 81 B CYS 334 1_555 BA ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc29 B OD1 ASP 82 B ASP 335 1_555 EA NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc30 B SG CYS 84 B CYS 337 1_555 BA ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc31 B ND1 HIS 89 B HIS 342 1_555 AA ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc32 B SG CYS 92 B CYS 345 1_555 AA ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc33 B SG CYS 107 B CYS 360 1_555 BA ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc34 B SG CYS 110 B CYS 363 1_555 BA ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc35 EA NA NA . B NA 1007 1_555 UA O HOH . B HOH 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc36 EA NA NA . B NA 1007 1_555 UA O HOH . B HOH 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc37 EA NA NA . B NA 1007 1_555 UA O HOH . B HOH 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc38 EA NA NA . B NA 1007 1_555 UA O HOH . B HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5I3L _atom_sites.fract_transf_matrix[1][1] 0.010018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 1001 1001 ZN ZN . E 3 ZN A 1 1002 1002 ZN ZN . F 3 ZN A 1 1003 1003 ZN ZN . G 3 ZN A 1 1004 1004 ZN ZN . H 4 EDO A 1 1005 1 EDO EDO . I 5 UNX A 1 1006 3 UNX UNX . J 5 UNX A 1 1007 5 UNX UNX . K 5 UNX A 1 1008 10 UNX UNX . L 5 UNX A 1 1009 39 UNX UNX . M 5 UNX A 1 1010 2 UNX UNX . N 5 UNX A 1 1011 4 UNX UNX . O 5 UNX A 1 1012 5 UNX UNX . P 5 UNX A 1 1013 11 UNX UNX . Q 5 UNX A 1 1014 17 UNX UNX . R 5 UNX A 1 1015 21 UNX UNX . S 5 UNX A 1 1016 22 UNX UNX . T 5 UNX A 1 1017 39 UNX UNX . U 5 UNX A 1 1018 41 UNX UNX . V 5 UNX A 1 1019 75 UNX UNX . W 5 UNX A 1 1020 89 UNX UNX . X 5 UNX A 1 1021 128 UNX UNX . Y 3 ZN B 1 1001 1001 ZN ZN . Z 3 ZN B 1 1002 1002 ZN ZN . AA 3 ZN B 1 1003 1003 ZN ZN . BA 3 ZN B 1 1004 1004 ZN ZN . CA 5 UNX B 1 1005 7 UNX UNX . DA 5 UNX B 1 1006 1 UNX UNX . EA 6 NA B 1 1007 1 NA NA . FA 5 UNX B 1 1008 7 UNX UNX . GA 5 UNX B 1 1009 8 UNX UNX . HA 5 UNX B 1 1010 10 UNX UNX . IA 5 UNX B 1 1011 23 UNX UNX . JA 5 UNX B 1 1012 24 UNX UNX . KA 5 UNX B 1 1013 25 UNX UNX . LA 5 UNX B 1 1014 26 UNX UNX . MA 5 UNX B 1 1015 35 UNX UNX . NA 5 UNX B 1 1016 37 UNX UNX . OA 5 UNX B 1 1017 85 UNX UNX . PA 5 UNX B 1 1018 123 UNX UNX . QA 5 UNX B 1 1019 125 UNX UNX . RA 5 UNX B 1 1020 131 UNX UNX . SA 5 UNX B 1 1021 132 UNX UNX . TA 7 HOH A 1 1101 93 HOH HOH . TA 7 HOH A 2 1102 42 HOH HOH . TA 7 HOH A 3 1103 66 HOH HOH . TA 7 HOH A 4 1104 38 HOH HOH . TA 7 HOH A 5 1105 28 HOH HOH . TA 7 HOH A 6 1106 19 HOH HOH . TA 7 HOH A 7 1107 61 HOH HOH . TA 7 HOH A 8 1108 11 HOH HOH . TA 7 HOH A 9 1109 51 HOH HOH . TA 7 HOH A 10 1110 108 HOH HOH . TA 7 HOH A 11 1111 129 HOH HOH . TA 7 HOH A 12 1112 4 HOH HOH . TA 7 HOH A 13 1113 52 HOH HOH . TA 7 HOH A 14 1114 23 HOH HOH . TA 7 HOH A 15 1115 20 HOH HOH . TA 7 HOH A 16 1116 55 HOH HOH . TA 7 HOH A 17 1117 67 HOH HOH . TA 7 HOH A 18 1118 14 HOH HOH . TA 7 HOH A 19 1119 46 HOH HOH . TA 7 HOH A 20 1120 24 HOH HOH . TA 7 HOH A 21 1121 44 HOH HOH . TA 7 HOH A 22 1122 48 HOH HOH . TA 7 HOH A 23 1123 2 HOH HOH . TA 7 HOH A 24 1124 71 HOH HOH . TA 7 HOH A 25 1125 34 HOH HOH . TA 7 HOH A 26 1126 1 HOH HOH . TA 7 HOH A 27 1127 58 HOH HOH . TA 7 HOH A 28 1128 112 HOH HOH . TA 7 HOH A 29 1129 13 HOH HOH . TA 7 HOH A 30 1130 107 HOH HOH . TA 7 HOH A 31 1131 5 HOH HOH . TA 7 HOH A 32 1132 111 HOH HOH . TA 7 HOH A 33 1133 37 HOH HOH . TA 7 HOH A 34 1134 62 HOH HOH . TA 7 HOH A 35 1135 83 HOH HOH . UA 7 HOH B 1 1101 127 HOH HOH . UA 7 HOH B 2 1102 97 HOH HOH . UA 7 HOH B 3 1103 98 HOH HOH . UA 7 HOH B 4 1104 47 HOH HOH . UA 7 HOH B 5 1105 80 HOH HOH . UA 7 HOH B 6 1106 25 HOH HOH . UA 7 HOH B 7 1107 69 HOH HOH . UA 7 HOH B 8 1108 30 HOH HOH . UA 7 HOH B 9 1109 31 HOH HOH . UA 7 HOH B 10 1110 124 HOH HOH . UA 7 HOH B 11 1111 76 HOH HOH . UA 7 HOH B 12 1112 22 HOH HOH . UA 7 HOH B 13 1113 21 HOH HOH . UA 7 HOH B 14 1114 86 HOH HOH . UA 7 HOH B 15 1115 29 HOH HOH . UA 7 HOH B 16 1116 45 HOH HOH . UA 7 HOH B 17 1117 49 HOH HOH . UA 7 HOH B 18 1118 101 HOH HOH . UA 7 HOH B 19 1119 35 HOH HOH . UA 7 HOH B 20 1120 87 HOH HOH . UA 7 HOH B 21 1121 26 HOH HOH . UA 7 HOH B 22 1122 33 HOH HOH . UA 7 HOH B 23 1123 31 HOH HOH . UA 7 HOH B 24 1124 78 HOH HOH . UA 7 HOH B 25 1125 25 HOH HOH . UA 7 HOH B 26 1126 13 HOH HOH . UA 7 HOH B 27 1127 63 HOH HOH . UA 7 HOH B 28 1128 8 HOH HOH . UA 7 HOH B 29 1129 14 HOH HOH . UA 7 HOH B 30 1130 28 HOH HOH . UA 7 HOH B 31 1131 109 HOH HOH . UA 7 HOH B 32 1132 43 HOH HOH . UA 7 HOH B 33 1133 126 HOH HOH . UA 7 HOH B 34 1134 17 HOH HOH . UA 7 HOH B 35 1135 64 HOH HOH . UA 7 HOH B 36 1136 56 HOH HOH . UA 7 HOH B 37 1137 103 HOH HOH . UA 7 HOH B 38 1138 122 HOH HOH . UA 7 HOH B 39 1139 59 HOH HOH . UA 7 HOH B 40 1140 94 HOH HOH . UA 7 HOH B 41 1141 9 HOH HOH . UA 7 HOH B 42 1142 102 HOH HOH . UA 7 HOH B 43 1143 92 HOH HOH . UA 7 HOH B 44 1144 121 HOH HOH . UA 7 HOH B 45 1145 21 HOH HOH . UA 7 HOH B 46 1146 40 HOH HOH . UA 7 HOH B 47 1147 68 HOH HOH . UA 7 HOH B 48 1148 130 HOH HOH . UA 7 HOH B 49 1149 106 HOH HOH . UA 7 HOH B 50 1150 90 HOH HOH . UA 7 HOH B 51 1151 110 HOH HOH . UA 7 HOH B 52 1152 77 HOH HOH . UA 7 HOH B 53 1153 88 HOH HOH . UA 7 HOH B 54 1154 34 HOH HOH . UA 7 HOH B 55 1155 82 HOH HOH . VA 7 HOH C 1 101 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 5 _atom_site.Cartn_x -3.12 _atom_site.Cartn_y 146.931 _atom_site.Cartn_z 4.824 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 1013 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #