data_5I40 # _model_server_result.job_id 9WT0zPMwgsAiGSIH6SzwZg _model_server_result.datetime_utc '2024-11-24 19:42:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5I40 # _exptl.entry_id 5I40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.47 _cell.angle_beta 73.32 _cell.angle_gamma 74.52 _cell.entry_id 5I40 _cell.length_a 24.58 _cell.length_b 33.745 _cell.length_c 39.503 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 5I40 _atom_sites.fract_transf_matrix[1][1] 0.040683 _atom_sites.fract_transf_matrix[1][2] -0.011269 _atom_sites.fract_transf_matrix[1][3] -0.009416 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03075 _atom_sites.fract_transf_matrix[2][3] -0.008938 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 2 EDO A 1 204 4 EDO EDO . F 3 PEG A 1 205 5 PEG PEG . G 4 67N A 1 206 1 67N DRG . H 5 HOH A 1 301 66 HOH HOH . H 5 HOH A 2 302 175 HOH HOH . H 5 HOH A 3 303 78 HOH HOH . H 5 HOH A 4 304 36 HOH HOH . H 5 HOH A 5 305 72 HOH HOH . H 5 HOH A 6 306 3 HOH HOH . H 5 HOH A 7 307 54 HOH HOH . H 5 HOH A 8 308 32 HOH HOH . H 5 HOH A 9 309 19 HOH HOH . H 5 HOH A 10 310 81 HOH HOH . H 5 HOH A 11 311 63 HOH HOH . H 5 HOH A 12 312 169 HOH HOH . H 5 HOH A 13 313 43 HOH HOH . H 5 HOH A 14 314 48 HOH HOH . H 5 HOH A 15 315 151 HOH HOH . H 5 HOH A 16 316 7 HOH HOH . H 5 HOH A 17 317 152 HOH HOH . H 5 HOH A 18 318 171 HOH HOH . H 5 HOH A 19 319 160 HOH HOH . H 5 HOH A 20 320 20 HOH HOH . H 5 HOH A 21 321 27 HOH HOH . H 5 HOH A 22 322 182 HOH HOH . H 5 HOH A 23 323 191 HOH HOH . H 5 HOH A 24 324 4 HOH HOH . H 5 HOH A 25 325 156 HOH HOH . H 5 HOH A 26 326 1 HOH HOH . H 5 HOH A 27 327 172 HOH HOH . H 5 HOH A 28 328 15 HOH HOH . H 5 HOH A 29 329 65 HOH HOH . H 5 HOH A 30 330 144 HOH HOH . H 5 HOH A 31 331 24 HOH HOH . H 5 HOH A 32 332 80 HOH HOH . H 5 HOH A 33 333 12 HOH HOH . H 5 HOH A 34 334 44 HOH HOH . H 5 HOH A 35 335 38 HOH HOH . H 5 HOH A 36 336 18 HOH HOH . H 5 HOH A 37 337 41 HOH HOH . H 5 HOH A 38 338 45 HOH HOH . H 5 HOH A 39 339 16 HOH HOH . H 5 HOH A 40 340 173 HOH HOH . H 5 HOH A 41 341 5 HOH HOH . H 5 HOH A 42 342 141 HOH HOH . H 5 HOH A 43 343 150 HOH HOH . H 5 HOH A 44 344 47 HOH HOH . H 5 HOH A 45 345 60 HOH HOH . H 5 HOH A 46 346 33 HOH HOH . H 5 HOH A 47 347 17 HOH HOH . H 5 HOH A 48 348 140 HOH HOH . H 5 HOH A 49 349 30 HOH HOH . H 5 HOH A 50 350 14 HOH HOH . H 5 HOH A 51 351 49 HOH HOH . H 5 HOH A 52 352 50 HOH HOH . H 5 HOH A 53 353 146 HOH HOH . H 5 HOH A 54 354 8 HOH HOH . H 5 HOH A 55 355 21 HOH HOH . H 5 HOH A 56 356 193 HOH HOH . H 5 HOH A 57 357 153 HOH HOH . H 5 HOH A 58 358 34 HOH HOH . H 5 HOH A 59 359 86 HOH HOH . H 5 HOH A 60 360 13 HOH HOH . H 5 HOH A 61 361 6 HOH HOH . H 5 HOH A 62 362 28 HOH HOH . H 5 HOH A 63 363 31 HOH HOH . H 5 HOH A 64 364 9 HOH HOH . H 5 HOH A 65 365 159 HOH HOH . H 5 HOH A 66 366 83 HOH HOH . H 5 HOH A 67 367 154 HOH HOH . H 5 HOH A 68 368 64 HOH HOH . H 5 HOH A 69 369 61 HOH HOH . H 5 HOH A 70 370 22 HOH HOH . H 5 HOH A 71 371 89 HOH HOH . H 5 HOH A 72 372 51 HOH HOH . H 5 HOH A 73 373 143 HOH HOH . H 5 HOH A 74 374 53 HOH HOH . H 5 HOH A 75 375 165 HOH HOH . H 5 HOH A 76 376 186 HOH HOH . H 5 HOH A 77 377 11 HOH HOH . H 5 HOH A 78 378 158 HOH HOH . H 5 HOH A 79 379 167 HOH HOH . H 5 HOH A 80 380 163 HOH HOH . H 5 HOH A 81 381 178 HOH HOH . H 5 HOH A 82 382 59 HOH HOH . H 5 HOH A 83 383 2 HOH HOH . H 5 HOH A 84 384 40 HOH HOH . H 5 HOH A 85 385 155 HOH HOH . H 5 HOH A 86 386 70 HOH HOH . H 5 HOH A 87 387 25 HOH HOH . H 5 HOH A 88 388 91 HOH HOH . H 5 HOH A 89 389 190 HOH HOH . H 5 HOH A 90 390 192 HOH HOH . H 5 HOH A 91 391 145 HOH HOH . H 5 HOH A 92 392 42 HOH HOH . H 5 HOH A 93 393 94 HOH HOH . H 5 HOH A 94 394 35 HOH HOH . H 5 HOH A 95 395 77 HOH HOH . H 5 HOH A 96 396 93 HOH HOH . H 5 HOH A 97 397 139 HOH HOH . H 5 HOH A 98 398 170 HOH HOH . H 5 HOH A 99 399 82 HOH HOH . H 5 HOH A 100 400 142 HOH HOH . H 5 HOH A 101 401 110 HOH HOH . H 5 HOH A 102 402 85 HOH HOH . H 5 HOH A 103 403 76 HOH HOH . H 5 HOH A 104 404 10 HOH HOH . H 5 HOH A 105 405 84 HOH HOH . H 5 HOH A 106 406 39 HOH HOH . H 5 HOH A 107 407 189 HOH HOH . H 5 HOH A 108 408 87 HOH HOH . H 5 HOH A 109 409 116 HOH HOH . H 5 HOH A 110 410 55 HOH HOH . H 5 HOH A 111 411 26 HOH HOH . H 5 HOH A 112 412 102 HOH HOH . H 5 HOH A 113 413 181 HOH HOH . H 5 HOH A 114 414 74 HOH HOH . H 5 HOH A 115 415 101 HOH HOH . H 5 HOH A 116 416 71 HOH HOH . H 5 HOH A 117 417 176 HOH HOH . H 5 HOH A 118 418 23 HOH HOH . H 5 HOH A 119 419 90 HOH HOH . H 5 HOH A 120 420 185 HOH HOH . H 5 HOH A 121 421 179 HOH HOH . H 5 HOH A 122 422 96 HOH HOH . H 5 HOH A 123 423 67 HOH HOH . H 5 HOH A 124 424 69 HOH HOH . H 5 HOH A 125 425 98 HOH HOH . H 5 HOH A 126 426 88 HOH HOH . H 5 HOH A 127 427 133 HOH HOH . H 5 HOH A 128 428 106 HOH HOH . H 5 HOH A 129 429 177 HOH HOH . H 5 HOH A 130 430 195 HOH HOH . H 5 HOH A 131 431 75 HOH HOH . H 5 HOH A 132 432 157 HOH HOH . H 5 HOH A 133 433 29 HOH HOH . H 5 HOH A 134 434 37 HOH HOH . H 5 HOH A 135 435 58 HOH HOH . H 5 HOH A 136 436 184 HOH HOH . H 5 HOH A 137 437 56 HOH HOH . H 5 HOH A 138 438 188 HOH HOH . H 5 HOH A 139 439 147 HOH HOH . H 5 HOH A 140 440 183 HOH HOH . H 5 HOH A 141 441 79 HOH HOH . H 5 HOH A 142 442 97 HOH HOH . H 5 HOH A 143 443 62 HOH HOH . H 5 HOH A 144 444 68 HOH HOH . H 5 HOH A 145 445 92 HOH HOH . H 5 HOH A 146 446 104 HOH HOH . H 5 HOH A 147 447 162 HOH HOH . H 5 HOH A 148 448 149 HOH HOH . H 5 HOH A 149 449 57 HOH HOH . H 5 HOH A 150 450 187 HOH HOH . H 5 HOH A 151 451 46 HOH HOH . H 5 HOH A 152 452 168 HOH HOH . H 5 HOH A 153 453 109 HOH HOH . H 5 HOH A 154 454 112 HOH HOH . H 5 HOH A 155 455 148 HOH HOH . H 5 HOH A 156 456 194 HOH HOH . H 5 HOH A 157 457 100 HOH HOH . H 5 HOH A 158 458 119 HOH HOH . H 5 HOH A 159 459 117 HOH HOH . H 5 HOH A 160 460 123 HOH HOH . H 5 HOH A 161 461 174 HOH HOH . H 5 HOH A 162 462 111 HOH HOH . H 5 HOH A 163 463 108 HOH HOH . H 5 HOH A 164 464 107 HOH HOH . H 5 HOH A 165 465 180 HOH HOH . H 5 HOH A 166 466 73 HOH HOH . H 5 HOH A 167 467 120 HOH HOH . H 5 HOH A 168 468 52 HOH HOH . H 5 HOH A 169 469 164 HOH HOH . H 5 HOH A 170 470 122 HOH HOH . H 5 HOH A 171 471 113 HOH HOH . H 5 HOH A 172 472 129 HOH HOH . H 5 HOH A 173 473 126 HOH HOH . H 5 HOH A 174 474 115 HOH HOH . H 5 HOH A 175 475 99 HOH HOH . H 5 HOH A 176 476 95 HOH HOH . H 5 HOH A 177 477 130 HOH HOH . H 5 HOH A 178 478 161 HOH HOH . H 5 HOH A 179 479 124 HOH HOH . H 5 HOH A 180 480 105 HOH HOH . H 5 HOH A 181 481 114 HOH HOH . H 5 HOH A 182 482 128 HOH HOH . H 5 HOH A 183 483 131 HOH HOH . H 5 HOH A 184 484 103 HOH HOH . H 5 HOH A 185 485 118 HOH HOH . H 5 HOH A 186 486 136 HOH HOH . H 5 HOH A 187 487 127 HOH HOH . H 5 HOH A 188 488 166 HOH HOH . H 5 HOH A 189 489 138 HOH HOH . H 5 HOH A 190 490 132 HOH HOH . H 5 HOH A 191 491 121 HOH HOH . H 5 HOH A 192 492 137 HOH HOH . H 5 HOH A 193 493 135 HOH HOH . H 5 HOH A 194 494 125 HOH HOH . H 5 HOH A 195 495 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 -12.264 -3.539 13.767 1 30.68 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 2 -11.571 -3.119 12.587 1 31.33 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 2 -11.477 -3.104 14.997 1 29.7 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 2 -11.28 -1.684 14.977 1 28.42 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 734 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #