data_5I4J
#
_model_server_result.job_id            KpibP-UcAmk_JVNLw_kpYw 
_model_server_result.datetime_utc      '2025-03-04 08:39:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    5I4J 
#
_exptl.entry_id    5I4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5I4J 
_cell.length_a            100.92 
_cell.length_b            100.92 
_cell.length_c            144.27 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.46 -87.399284 0 
3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 50.46 -87.399284 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 46 A HIS 51 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A NE2 HIS 73 A HIS 78 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc3 A OE1 GLU 77 A GLU 82 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc4 E ZN ZN . A ZN 201 1_555 B NE2 HIS 46 B HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc5 G ZN ZN . A ZN 203 1_555 B NE2 HIS 73 B HIS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc6 G ZN ZN . A ZN 203 1_555 B OE2 GLU 77 B GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc7 C NE2 HIS 46 C HIS 51 1_555 I ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc8 C NE2 HIS 73 C HIS 78 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc9 C OE2 GLU 77 C GLU 82 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc10 H ZN ZN . C ZN 201 1_555 D NE2 HIS 46 D HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc11 I ZN ZN . C ZN 202 1_555 D NE2 HIS 73 D HIS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     5I4J 
_atom_sites.fract_transf_matrix[1][1]    0.009909 
_atom_sites.fract_transf_matrix[1][2]    0.005721 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011442 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 201 1 ZN ZN . 
F 3 EPE A 1 202 252 EPE EPE . 
G 2 ZN A 1 203 1 ZN ZN . 
H 2 ZN C 1 201 1 ZN ZN . 
I 2 ZN C 1 202 1 ZN ZN . 
J 4 HOH A 1 301 45 HOH HOH . 
J 4 HOH A 2 302 29 HOH HOH . 
J 4 HOH A 3 303 56 HOH HOH . 
J 4 HOH A 4 304 18 HOH HOH . 
J 4 HOH A 5 305 47 HOH HOH . 
J 4 HOH A 6 306 46 HOH HOH . 
J 4 HOH A 7 307 6 HOH HOH . 
J 4 HOH A 8 308 32 HOH HOH . 
J 4 HOH A 9 309 73 HOH HOH . 
J 4 HOH A 10 310 30 HOH HOH . 
J 4 HOH A 11 311 9 HOH HOH . 
J 4 HOH A 12 312 37 HOH HOH . 
J 4 HOH A 13 313 68 HOH HOH . 
J 4 HOH A 14 314 36 HOH HOH . 
J 4 HOH A 15 315 66 HOH HOH . 
J 4 HOH A 16 316 31 HOH HOH . 
J 4 HOH A 17 317 24 HOH HOH . 
J 4 HOH A 18 318 27 HOH HOH . 
J 4 HOH A 19 319 38 HOH HOH . 
J 4 HOH A 20 320 13 HOH HOH . 
J 4 HOH A 21 321 67 HOH HOH . 
J 4 HOH A 22 322 76 HOH HOH . 
J 4 HOH A 23 323 40 HOH HOH . 
J 4 HOH A 24 324 41 HOH HOH . 
K 4 HOH B 1 301 17 HOH HOH . 
K 4 HOH B 2 302 71 HOH HOH . 
K 4 HOH B 3 303 70 HOH HOH . 
K 4 HOH B 4 304 12 HOH HOH . 
K 4 HOH B 5 305 72 HOH HOH . 
K 4 HOH B 6 306 25 HOH HOH . 
K 4 HOH B 7 307 77 HOH HOH . 
K 4 HOH B 8 308 33 HOH HOH . 
K 4 HOH B 9 309 20 HOH HOH . 
K 4 HOH B 10 310 55 HOH HOH . 
K 4 HOH B 11 311 19 HOH HOH . 
K 4 HOH B 12 312 2 HOH HOH . 
K 4 HOH B 13 313 59 HOH HOH . 
K 4 HOH B 14 314 4 HOH HOH . 
K 4 HOH B 15 315 54 HOH HOH . 
K 4 HOH B 16 316 53 HOH HOH . 
K 4 HOH B 17 317 57 HOH HOH . 
K 4 HOH B 18 318 14 HOH HOH . 
K 4 HOH B 19 319 79 HOH HOH . 
K 4 HOH B 20 320 78 HOH HOH . 
K 4 HOH B 21 321 50 HOH HOH . 
K 4 HOH B 22 322 58 HOH HOH . 
L 4 HOH C 1 301 8 HOH HOH . 
L 4 HOH C 2 302 62 HOH HOH . 
L 4 HOH C 3 303 5 HOH HOH . 
L 4 HOH C 4 304 81 HOH HOH . 
L 4 HOH C 5 305 34 HOH HOH . 
L 4 HOH C 6 306 82 HOH HOH . 
L 4 HOH C 7 307 84 HOH HOH . 
L 4 HOH C 8 308 80 HOH HOH . 
M 4 HOH D 1 301 15 HOH HOH . 
M 4 HOH D 2 302 3 HOH HOH . 
M 4 HOH D 3 303 61 HOH HOH . 
M 4 HOH D 4 304 11 HOH HOH . 
M 4 HOH D 5 305 10 HOH HOH . 
M 4 HOH D 6 306 22 HOH HOH . 
M 4 HOH D 7 307 74 HOH HOH . 
M 4 HOH D 8 308 7 HOH HOH . 
M 4 HOH D 9 309 48 HOH HOH . 
M 4 HOH D 10 310 83 HOH HOH . 
M 4 HOH D 11 311 26 HOH HOH . 
M 4 HOH D 12 312 60 HOH HOH . 
M 4 HOH D 13 313 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . F 3 -21.378 -39.899 -33.844 0.84 65.8 ? N1 EPE 202 A 1 
HETATM 2 C C2 EPE . . . F 3 -21.723 -38.467 -33.782 0.84 67.81 ? C2 EPE 202 A 1 
HETATM 3 C C3 EPE . . . F 3 -22.957 -38.193 -32.927 0.84 69 ? C3 EPE 202 A 1 
HETATM 4 N N4 EPE . . . F 3 -24.052 -39.076 -33.268 0.84 69.75 ? N4 EPE 202 A 1 
HETATM 5 C C5 EPE . . . F 3 -23.759 -40.486 -33.439 0.84 67.85 ? C5 EPE 202 A 1 
HETATM 6 C C6 EPE . . . F 3 -22.515 -40.727 -34.29 0.84 64.52 ? C6 EPE 202 A 1 
HETATM 7 C C7 EPE . . . F 3 -25.417 -38.638 -33.031 0.84 71.78 ? C7 EPE 202 A 1 
HETATM 8 C C8 EPE . . . F 3 -25.665 -37.218 -33.553 0.84 74.4 ? C8 EPE 202 A 1 
HETATM 9 O O8 EPE . . . F 3 -26.572 -37.232 -34.643 0.84 73.35 ? O8 EPE 202 A 1 
HETATM 10 C C9 EPE . . . F 3 -20.323 -40.025 -34.859 0.84 65.93 ? C9 EPE 202 A 1 
HETATM 11 C C10 EPE . . . F 3 -18.975 -39.587 -34.302 0.84 65.2 ? C10 EPE 202 A 1 
HETATM 12 S S EPE . . . F 3 -17.62 -39.766 -35.503 0.84 76.08 ? S EPE 202 A 1 
HETATM 13 O O1S EPE . . . F 3 -17.919 -39.038 -36.735 0.84 77.8 ? O1S EPE 202 A 1 
HETATM 14 O O2S EPE . . . F 3 -17.373 -41.18 -35.812 0.84 69.1 ? O2S EPE 202 A 1 
HETATM 15 O O3S EPE . . . F 3 -16.44 -39.152 -34.909 0.84 75.96 ? O3S EPE 202 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#