data_5I4K # _model_server_result.job_id r7LYyaQLCO6fbu9tbe816Q _model_server_result.datetime_utc '2024-11-24 18:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5I4K # _exptl.entry_id 5I4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I4K _cell.length_a 57.906 _cell.length_b 62.311 _cell.length_c 75.492 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 81 A ARG 101 1_555 A N MSE 82 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 82 A MSE 102 1_555 A N LEU 83 A LEU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLN 216 A GLN 236 1_555 A N MSE 217 A MSE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 217 A MSE 237 1_555 A N LYS 218 A LYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C SER 242 A SER 262 1_555 A N MSE 243 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 243 A MSE 263 1_555 A N GLU 244 A GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 A C GLU 275 A GLU 295 1_555 A N MSE 276 A MSE 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 276 A MSE 296 1_555 A N MSE 277 A MSE 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C MSE 277 A MSE 297 1_555 A N ARG 278 A ARG 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 47 A HIS 67 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A NE2 HIS 120 A HIS 140 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 A OE1 GLU 186 A GLU 206 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 A OE2 GLU 186 A GLU 206 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc5 A OD1 ASP 261 A ASP 281 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc6 A OD2 ASP 261 A ASP 281 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 A OD1 ASP 271 A ASP 291 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc8 A OE1 GLU 275 A GLU 295 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc9 A OE2 GLU 275 A GLU 295 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc10 C MN MN . A MN 502 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc11 C MN MN . A MN 502 1_555 E O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc12 C MN MN . A MN 502 1_555 E O HOH . A HOH 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 C MN MN . A MN 502 1_555 E O HOH . A HOH 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5I4K _atom_sites.fract_transf_matrix[1][1] 0.017269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 2 MN A 1 502 502 MN MN . D 3 CL A 1 503 503 CL CL . E 4 HOH A 1 601 212 HOH HOH . E 4 HOH A 2 602 194 HOH HOH . E 4 HOH A 3 603 153 HOH HOH . E 4 HOH A 4 604 131 HOH HOH . E 4 HOH A 5 605 71 HOH HOH . E 4 HOH A 6 606 213 HOH HOH . E 4 HOH A 7 607 201 HOH HOH . E 4 HOH A 8 608 92 HOH HOH . E 4 HOH A 9 609 49 HOH HOH . E 4 HOH A 10 610 200 HOH HOH . E 4 HOH A 11 611 146 HOH HOH . E 4 HOH A 12 612 208 HOH HOH . E 4 HOH A 13 613 114 HOH HOH . E 4 HOH A 14 614 188 HOH HOH . E 4 HOH A 15 615 126 HOH HOH . E 4 HOH A 16 616 149 HOH HOH . E 4 HOH A 17 617 89 HOH HOH . E 4 HOH A 18 618 109 HOH HOH . E 4 HOH A 19 619 25 HOH HOH . E 4 HOH A 20 620 122 HOH HOH . E 4 HOH A 21 621 151 HOH HOH . E 4 HOH A 22 622 87 HOH HOH . E 4 HOH A 23 623 163 HOH HOH . E 4 HOH A 24 624 113 HOH HOH . E 4 HOH A 25 625 111 HOH HOH . E 4 HOH A 26 626 88 HOH HOH . E 4 HOH A 27 627 160 HOH HOH . E 4 HOH A 28 628 110 HOH HOH . E 4 HOH A 29 629 82 HOH HOH . E 4 HOH A 30 630 52 HOH HOH . E 4 HOH A 31 631 142 HOH HOH . E 4 HOH A 32 632 140 HOH HOH . E 4 HOH A 33 633 103 HOH HOH . E 4 HOH A 34 634 155 HOH HOH . E 4 HOH A 35 635 102 HOH HOH . E 4 HOH A 36 636 78 HOH HOH . E 4 HOH A 37 637 166 HOH HOH . E 4 HOH A 38 638 29 HOH HOH . E 4 HOH A 39 639 4 HOH HOH . E 4 HOH A 40 640 180 HOH HOH . E 4 HOH A 41 641 20 HOH HOH . E 4 HOH A 42 642 95 HOH HOH . E 4 HOH A 43 643 57 HOH HOH . E 4 HOH A 44 644 119 HOH HOH . E 4 HOH A 45 645 2 HOH HOH . E 4 HOH A 46 646 125 HOH HOH . E 4 HOH A 47 647 24 HOH HOH . E 4 HOH A 48 648 60 HOH HOH . E 4 HOH A 49 649 46 HOH HOH . E 4 HOH A 50 650 48 HOH HOH . E 4 HOH A 51 651 11 HOH HOH . E 4 HOH A 52 652 1 HOH HOH . E 4 HOH A 53 653 28 HOH HOH . E 4 HOH A 54 654 47 HOH HOH . E 4 HOH A 55 655 127 HOH HOH . E 4 HOH A 56 656 91 HOH HOH . E 4 HOH A 57 657 177 HOH HOH . E 4 HOH A 58 658 36 HOH HOH . E 4 HOH A 59 659 61 HOH HOH . E 4 HOH A 60 660 59 HOH HOH . E 4 HOH A 61 661 112 HOH HOH . E 4 HOH A 62 662 3 HOH HOH . E 4 HOH A 63 663 62 HOH HOH . E 4 HOH A 64 664 154 HOH HOH . E 4 HOH A 65 665 18 HOH HOH . E 4 HOH A 66 666 32 HOH HOH . E 4 HOH A 67 667 73 HOH HOH . E 4 HOH A 68 668 195 HOH HOH . E 4 HOH A 69 669 45 HOH HOH . E 4 HOH A 70 670 138 HOH HOH . E 4 HOH A 71 671 26 HOH HOH . E 4 HOH A 72 672 6 HOH HOH . E 4 HOH A 73 673 107 HOH HOH . E 4 HOH A 74 674 64 HOH HOH . E 4 HOH A 75 675 150 HOH HOH . E 4 HOH A 76 676 23 HOH HOH . E 4 HOH A 77 677 50 HOH HOH . E 4 HOH A 78 678 145 HOH HOH . E 4 HOH A 79 679 175 HOH HOH . E 4 HOH A 80 680 51 HOH HOH . E 4 HOH A 81 681 169 HOH HOH . E 4 HOH A 82 682 31 HOH HOH . E 4 HOH A 83 683 96 HOH HOH . E 4 HOH A 84 684 30 HOH HOH . E 4 HOH A 85 685 144 HOH HOH . E 4 HOH A 86 686 35 HOH HOH . E 4 HOH A 87 687 189 HOH HOH . E 4 HOH A 88 688 77 HOH HOH . E 4 HOH A 89 689 97 HOH HOH . E 4 HOH A 90 690 53 HOH HOH . E 4 HOH A 91 691 75 HOH HOH . E 4 HOH A 92 692 130 HOH HOH . E 4 HOH A 93 693 44 HOH HOH . E 4 HOH A 94 694 99 HOH HOH . E 4 HOH A 95 695 223 HOH HOH . E 4 HOH A 96 696 33 HOH HOH . E 4 HOH A 97 697 181 HOH HOH . E 4 HOH A 98 698 158 HOH HOH . E 4 HOH A 99 699 27 HOH HOH . E 4 HOH A 100 700 80 HOH HOH . E 4 HOH A 101 701 54 HOH HOH . E 4 HOH A 102 702 55 HOH HOH . E 4 HOH A 103 703 10 HOH HOH . E 4 HOH A 104 704 63 HOH HOH . E 4 HOH A 105 705 58 HOH HOH . E 4 HOH A 106 706 184 HOH HOH . E 4 HOH A 107 707 174 HOH HOH . E 4 HOH A 108 708 157 HOH HOH . E 4 HOH A 109 709 186 HOH HOH . E 4 HOH A 110 710 34 HOH HOH . E 4 HOH A 111 711 8 HOH HOH . E 4 HOH A 112 712 202 HOH HOH . E 4 HOH A 113 713 41 HOH HOH . E 4 HOH A 114 714 133 HOH HOH . E 4 HOH A 115 715 104 HOH HOH . E 4 HOH A 116 716 203 HOH HOH . E 4 HOH A 117 717 22 HOH HOH . E 4 HOH A 118 718 14 HOH HOH . E 4 HOH A 119 719 98 HOH HOH . E 4 HOH A 120 720 176 HOH HOH . E 4 HOH A 121 721 9 HOH HOH . E 4 HOH A 122 722 5 HOH HOH . E 4 HOH A 123 723 191 HOH HOH . E 4 HOH A 124 724 165 HOH HOH . E 4 HOH A 125 725 148 HOH HOH . E 4 HOH A 126 726 159 HOH HOH . E 4 HOH A 127 727 56 HOH HOH . E 4 HOH A 128 728 116 HOH HOH . E 4 HOH A 129 729 12 HOH HOH . E 4 HOH A 130 730 66 HOH HOH . E 4 HOH A 131 731 83 HOH HOH . E 4 HOH A 132 732 214 HOH HOH . E 4 HOH A 133 733 68 HOH HOH . E 4 HOH A 134 734 94 HOH HOH . E 4 HOH A 135 735 129 HOH HOH . E 4 HOH A 136 736 85 HOH HOH . E 4 HOH A 137 737 65 HOH HOH . E 4 HOH A 138 738 13 HOH HOH . E 4 HOH A 139 739 207 HOH HOH . E 4 HOH A 140 740 7 HOH HOH . E 4 HOH A 141 741 115 HOH HOH . E 4 HOH A 142 742 120 HOH HOH . E 4 HOH A 143 743 101 HOH HOH . E 4 HOH A 144 744 19 HOH HOH . E 4 HOH A 145 745 74 HOH HOH . E 4 HOH A 146 746 128 HOH HOH . E 4 HOH A 147 747 15 HOH HOH . E 4 HOH A 148 748 21 HOH HOH . E 4 HOH A 149 749 187 HOH HOH . E 4 HOH A 150 750 43 HOH HOH . E 4 HOH A 151 751 124 HOH HOH . E 4 HOH A 152 752 121 HOH HOH . E 4 HOH A 153 753 178 HOH HOH . E 4 HOH A 154 754 105 HOH HOH . E 4 HOH A 155 755 76 HOH HOH . E 4 HOH A 156 756 38 HOH HOH . E 4 HOH A 157 757 100 HOH HOH . E 4 HOH A 158 758 69 HOH HOH . E 4 HOH A 159 759 147 HOH HOH . E 4 HOH A 160 760 222 HOH HOH . E 4 HOH A 161 761 183 HOH HOH . E 4 HOH A 162 762 216 HOH HOH . E 4 HOH A 163 763 16 HOH HOH . E 4 HOH A 164 764 117 HOH HOH . E 4 HOH A 165 765 217 HOH HOH . E 4 HOH A 166 766 143 HOH HOH . E 4 HOH A 167 767 141 HOH HOH . E 4 HOH A 168 768 39 HOH HOH . E 4 HOH A 169 769 84 HOH HOH . E 4 HOH A 170 770 70 HOH HOH . E 4 HOH A 171 771 17 HOH HOH . E 4 HOH A 172 772 137 HOH HOH . E 4 HOH A 173 773 152 HOH HOH . E 4 HOH A 174 774 172 HOH HOH . E 4 HOH A 175 775 168 HOH HOH . E 4 HOH A 176 776 185 HOH HOH . E 4 HOH A 177 777 79 HOH HOH . E 4 HOH A 178 778 171 HOH HOH . E 4 HOH A 179 779 164 HOH HOH . E 4 HOH A 180 780 199 HOH HOH . E 4 HOH A 181 781 209 HOH HOH . E 4 HOH A 182 782 139 HOH HOH . E 4 HOH A 183 783 72 HOH HOH . E 4 HOH A 184 784 210 HOH HOH . E 4 HOH A 185 785 173 HOH HOH . E 4 HOH A 186 786 198 HOH HOH . E 4 HOH A 187 787 136 HOH HOH . E 4 HOH A 188 788 167 HOH HOH . E 4 HOH A 189 789 118 HOH HOH . E 4 HOH A 190 790 182 HOH HOH . E 4 HOH A 191 791 37 HOH HOH . E 4 HOH A 192 792 215 HOH HOH . E 4 HOH A 193 793 86 HOH HOH . E 4 HOH A 194 794 196 HOH HOH . E 4 HOH A 195 795 162 HOH HOH . E 4 HOH A 196 796 192 HOH HOH . E 4 HOH A 197 797 81 HOH HOH . E 4 HOH A 198 798 108 HOH HOH . E 4 HOH A 199 799 221 HOH HOH . E 4 HOH A 200 800 170 HOH HOH . E 4 HOH A 201 801 206 HOH HOH . E 4 HOH A 202 802 42 HOH HOH . E 4 HOH A 203 803 134 HOH HOH . E 4 HOH A 204 804 135 HOH HOH . E 4 HOH A 205 805 90 HOH HOH . E 4 HOH A 206 806 220 HOH HOH . E 4 HOH A 207 807 193 HOH HOH . E 4 HOH A 208 808 106 HOH HOH . E 4 HOH A 209 809 93 HOH HOH . E 4 HOH A 210 810 132 HOH HOH . E 4 HOH A 211 811 179 HOH HOH . E 4 HOH A 212 812 211 HOH HOH . E 4 HOH A 213 813 67 HOH HOH . E 4 HOH A 214 814 190 HOH HOH . E 4 HOH A 215 815 123 HOH HOH . E 4 HOH A 216 816 40 HOH HOH . E 4 HOH A 217 817 161 HOH HOH . E 4 HOH A 218 818 218 HOH HOH . E 4 HOH A 219 819 156 HOH HOH . E 4 HOH A 220 820 219 HOH HOH . E 4 HOH A 221 821 205 HOH HOH . E 4 HOH A 222 822 204 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 54.138 _atom_site.Cartn_y 30.381 _atom_site.Cartn_z 44.11 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #