data_5I4N # _model_server_result.job_id a1UCGOxEi1UANF4ydH3Z5w _model_server_result.datetime_utc '2024-11-15 07:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 5I4N # _exptl.entry_id 5I4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I4N _cell.length_a 53.429 _cell.length_b 56.965 _cell.length_c 114.868 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 144 A ASN 678 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 B O3G ATP . A ATP 1000 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 B O2B ATP . A ATP 1000 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 B O2A ATP . A ATP 1000 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 C MG MG . A MG 1001 1_555 E O HOH . A HOH 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 C MG MG . A MG 1001 1_555 E O HOH . A HOH 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 5I4N _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1000 1000 ATP ATP . C 3 MG A 1 1001 1001 MG MG . D 4 GOL A 1 1002 1002 GOL GOL . E 5 HOH A 1 1101 159 HOH HOH . E 5 HOH A 2 1102 177 HOH HOH . E 5 HOH A 3 1103 38 HOH HOH . E 5 HOH A 4 1104 59 HOH HOH . E 5 HOH A 5 1105 166 HOH HOH . E 5 HOH A 6 1106 167 HOH HOH . E 5 HOH A 7 1107 65 HOH HOH . E 5 HOH A 8 1108 40 HOH HOH . E 5 HOH A 9 1109 34 HOH HOH . E 5 HOH A 10 1110 72 HOH HOH . E 5 HOH A 11 1111 42 HOH HOH . E 5 HOH A 12 1112 61 HOH HOH . E 5 HOH A 13 1113 69 HOH HOH . E 5 HOH A 14 1114 7 HOH HOH . E 5 HOH A 15 1115 27 HOH HOH . E 5 HOH A 16 1116 57 HOH HOH . E 5 HOH A 17 1117 110 HOH HOH . E 5 HOH A 18 1118 148 HOH HOH . E 5 HOH A 19 1119 163 HOH HOH . E 5 HOH A 20 1120 9 HOH HOH . E 5 HOH A 21 1121 79 HOH HOH . E 5 HOH A 22 1122 10 HOH HOH . E 5 HOH A 23 1123 92 HOH HOH . E 5 HOH A 24 1124 146 HOH HOH . E 5 HOH A 25 1125 26 HOH HOH . E 5 HOH A 26 1126 150 HOH HOH . E 5 HOH A 27 1127 1 HOH HOH . E 5 HOH A 28 1128 48 HOH HOH . E 5 HOH A 29 1129 30 HOH HOH . E 5 HOH A 30 1130 123 HOH HOH . E 5 HOH A 31 1131 3 HOH HOH . E 5 HOH A 32 1132 149 HOH HOH . E 5 HOH A 33 1133 89 HOH HOH . E 5 HOH A 34 1134 66 HOH HOH . E 5 HOH A 35 1135 179 HOH HOH . E 5 HOH A 36 1136 129 HOH HOH . E 5 HOH A 37 1137 171 HOH HOH . E 5 HOH A 38 1138 44 HOH HOH . E 5 HOH A 39 1139 12 HOH HOH . E 5 HOH A 40 1140 54 HOH HOH . E 5 HOH A 41 1141 80 HOH HOH . E 5 HOH A 42 1142 85 HOH HOH . E 5 HOH A 43 1143 41 HOH HOH . E 5 HOH A 44 1144 77 HOH HOH . E 5 HOH A 45 1145 127 HOH HOH . E 5 HOH A 46 1146 17 HOH HOH . E 5 HOH A 47 1147 184 HOH HOH . E 5 HOH A 48 1148 87 HOH HOH . E 5 HOH A 49 1149 154 HOH HOH . E 5 HOH A 50 1150 153 HOH HOH . E 5 HOH A 51 1151 116 HOH HOH . E 5 HOH A 52 1152 2 HOH HOH . E 5 HOH A 53 1153 53 HOH HOH . E 5 HOH A 54 1154 113 HOH HOH . E 5 HOH A 55 1155 74 HOH HOH . E 5 HOH A 56 1156 176 HOH HOH . E 5 HOH A 57 1157 49 HOH HOH . E 5 HOH A 58 1158 68 HOH HOH . E 5 HOH A 59 1159 84 HOH HOH . E 5 HOH A 60 1160 151 HOH HOH . E 5 HOH A 61 1161 142 HOH HOH . E 5 HOH A 62 1162 76 HOH HOH . E 5 HOH A 63 1163 31 HOH HOH . E 5 HOH A 64 1164 88 HOH HOH . E 5 HOH A 65 1165 132 HOH HOH . E 5 HOH A 66 1166 67 HOH HOH . E 5 HOH A 67 1167 141 HOH HOH . E 5 HOH A 68 1168 91 HOH HOH . E 5 HOH A 69 1169 102 HOH HOH . E 5 HOH A 70 1170 108 HOH HOH . E 5 HOH A 71 1171 180 HOH HOH . E 5 HOH A 72 1172 6 HOH HOH . E 5 HOH A 73 1173 71 HOH HOH . E 5 HOH A 74 1174 126 HOH HOH . E 5 HOH A 75 1175 138 HOH HOH . E 5 HOH A 76 1176 75 HOH HOH . E 5 HOH A 77 1177 25 HOH HOH . E 5 HOH A 78 1178 60 HOH HOH . E 5 HOH A 79 1179 18 HOH HOH . E 5 HOH A 80 1180 143 HOH HOH . E 5 HOH A 81 1181 162 HOH HOH . E 5 HOH A 82 1182 11 HOH HOH . E 5 HOH A 83 1183 164 HOH HOH . E 5 HOH A 84 1184 28 HOH HOH . E 5 HOH A 85 1185 137 HOH HOH . E 5 HOH A 86 1186 95 HOH HOH . E 5 HOH A 87 1187 33 HOH HOH . E 5 HOH A 88 1188 145 HOH HOH . E 5 HOH A 89 1189 122 HOH HOH . E 5 HOH A 90 1190 16 HOH HOH . E 5 HOH A 91 1191 99 HOH HOH . E 5 HOH A 92 1192 117 HOH HOH . E 5 HOH A 93 1193 136 HOH HOH . E 5 HOH A 94 1194 13 HOH HOH . E 5 HOH A 95 1195 24 HOH HOH . E 5 HOH A 96 1196 37 HOH HOH . E 5 HOH A 97 1197 128 HOH HOH . E 5 HOH A 98 1198 5 HOH HOH . E 5 HOH A 99 1199 182 HOH HOH . E 5 HOH A 100 1200 32 HOH HOH . E 5 HOH A 101 1201 20 HOH HOH . E 5 HOH A 102 1202 120 HOH HOH . E 5 HOH A 103 1203 19 HOH HOH . E 5 HOH A 104 1204 107 HOH HOH . E 5 HOH A 105 1205 36 HOH HOH . E 5 HOH A 106 1206 50 HOH HOH . E 5 HOH A 107 1207 55 HOH HOH . E 5 HOH A 108 1208 22 HOH HOH . E 5 HOH A 109 1209 14 HOH HOH . E 5 HOH A 110 1210 152 HOH HOH . E 5 HOH A 111 1211 52 HOH HOH . E 5 HOH A 112 1212 119 HOH HOH . E 5 HOH A 113 1213 170 HOH HOH . E 5 HOH A 114 1214 90 HOH HOH . E 5 HOH A 115 1215 118 HOH HOH . E 5 HOH A 116 1216 83 HOH HOH . E 5 HOH A 117 1217 130 HOH HOH . E 5 HOH A 118 1218 157 HOH HOH . E 5 HOH A 119 1219 70 HOH HOH . E 5 HOH A 120 1220 45 HOH HOH . E 5 HOH A 121 1221 147 HOH HOH . E 5 HOH A 122 1222 104 HOH HOH . E 5 HOH A 123 1223 160 HOH HOH . E 5 HOH A 124 1224 8 HOH HOH . E 5 HOH A 125 1225 131 HOH HOH . E 5 HOH A 126 1226 185 HOH HOH . E 5 HOH A 127 1227 105 HOH HOH . E 5 HOH A 128 1228 56 HOH HOH . E 5 HOH A 129 1229 47 HOH HOH . E 5 HOH A 130 1230 114 HOH HOH . E 5 HOH A 131 1231 15 HOH HOH . E 5 HOH A 132 1232 73 HOH HOH . E 5 HOH A 133 1233 106 HOH HOH . E 5 HOH A 134 1234 21 HOH HOH . E 5 HOH A 135 1235 78 HOH HOH . E 5 HOH A 136 1236 94 HOH HOH . E 5 HOH A 137 1237 46 HOH HOH . E 5 HOH A 138 1238 63 HOH HOH . E 5 HOH A 139 1239 111 HOH HOH . E 5 HOH A 140 1240 140 HOH HOH . E 5 HOH A 141 1241 103 HOH HOH . E 5 HOH A 142 1242 4 HOH HOH . E 5 HOH A 143 1243 23 HOH HOH . E 5 HOH A 144 1244 112 HOH HOH . E 5 HOH A 145 1245 93 HOH HOH . E 5 HOH A 146 1246 121 HOH HOH . E 5 HOH A 147 1247 51 HOH HOH . E 5 HOH A 148 1248 101 HOH HOH . E 5 HOH A 149 1249 144 HOH HOH . E 5 HOH A 150 1250 97 HOH HOH . E 5 HOH A 151 1251 133 HOH HOH . E 5 HOH A 152 1252 43 HOH HOH . E 5 HOH A 153 1253 39 HOH HOH . E 5 HOH A 154 1254 161 HOH HOH . E 5 HOH A 155 1255 169 HOH HOH . E 5 HOH A 156 1256 109 HOH HOH . E 5 HOH A 157 1257 172 HOH HOH . E 5 HOH A 158 1258 125 HOH HOH . E 5 HOH A 159 1259 29 HOH HOH . E 5 HOH A 160 1260 81 HOH HOH . E 5 HOH A 161 1261 168 HOH HOH . E 5 HOH A 162 1262 156 HOH HOH . E 5 HOH A 163 1263 98 HOH HOH . E 5 HOH A 164 1264 124 HOH HOH . E 5 HOH A 165 1265 158 HOH HOH . E 5 HOH A 166 1266 100 HOH HOH . E 5 HOH A 167 1267 62 HOH HOH . E 5 HOH A 168 1268 86 HOH HOH . E 5 HOH A 169 1269 135 HOH HOH . E 5 HOH A 170 1270 186 HOH HOH . E 5 HOH A 171 1271 139 HOH HOH . E 5 HOH A 172 1272 165 HOH HOH . E 5 HOH A 173 1273 181 HOH HOH . E 5 HOH A 174 1274 183 HOH HOH . E 5 HOH A 175 1275 175 HOH HOH . E 5 HOH A 176 1276 174 HOH HOH . E 5 HOH A 177 1277 115 HOH HOH . E 5 HOH A 178 1278 178 HOH HOH . E 5 HOH A 179 1279 173 HOH HOH . E 5 HOH A 180 1280 64 HOH HOH . E 5 HOH A 181 1281 134 HOH HOH . E 5 HOH A 182 1282 82 HOH HOH . E 5 HOH A 183 1283 96 HOH HOH . E 5 HOH A 184 1284 155 HOH HOH . E 5 HOH A 185 1285 35 HOH HOH . E 5 HOH A 186 1286 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -11.151 -24.189 12.908 1 35.3 ? C1 GOL 1002 A 1 HETATM 2 O O1 GOL . . . D 4 -12.181 -23.453 13.503 1 39.11 ? O1 GOL 1002 A 1 HETATM 3 C C2 GOL . . . D 4 -10.809 -23.599 11.552 1 42.3 ? C2 GOL 1002 A 1 HETATM 4 O O2 GOL . . . D 4 -11.914 -23.681 10.663 1 37.7 ? O2 GOL 1002 A 1 HETATM 5 C C3 GOL . . . D 4 -9.608 -24.349 10.988 1 42.82 ? C3 GOL 1002 A 1 HETATM 6 O O3 GOL . . . D 4 -8.871 -23.497 10.138 1 35.73 ? O3 GOL 1002 A 1 HETATM 7 H H11 GOL . . . D 4 -11.463 -25.227 12.789 1 42.36 ? H11 GOL 1002 A 1 HETATM 8 H H12 GOL . . . D 4 -10.27 -24.172 13.549 1 42.36 ? H12 GOL 1002 A 1 HETATM 9 H HO1 GOL . . . D 4 -12.442 -23.878 14.346 1 46.93 ? HO1 GOL 1002 A 1 HETATM 10 H H2 GOL . . . D 4 -10.529 -22.555 11.691 1 50.76 ? H2 GOL 1002 A 1 HETATM 11 H HO2 GOL . . . D 4 -11.666 -23.295 9.797 1 45.24 ? HO2 GOL 1002 A 1 HETATM 12 H H31 GOL . . . D 4 -9.948 -25.222 10.431 1 51.39 ? H31 GOL 1002 A 1 HETATM 13 H H32 GOL . . . D 4 -8.973 -24.693 11.805 1 51.39 ? H32 GOL 1002 A 1 HETATM 14 H HO3 GOL . . . D 4 -9.175 -23.615 9.214 1 42.87 ? HO3 GOL 1002 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #