data_5I4V # _model_server_result.job_id O9SsRXef-pNH9aftihL7Lw _model_server_result.datetime_utc '2024-11-05 13:46:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5I4V # _exptl.entry_id 5I4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.524 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {2-[(2R)-4-[4-(hydroxymethyl)-3-(methylsulfonyl)phenyl]-2-(propan-2-yl)piperazin-1-yl]-4-(trifluoromethyl)pyrimidin-5-yl}methanol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I4V _cell.length_a 68.637 _cell.length_b 101.221 _cell.length_c 143.274 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H27 F3 N4 O4 S' _chem_comp.formula_weight 488.524 _chem_comp.id 67S _chem_comp.mon_nstd_flag . _chem_comp.name {2-[(2R)-4-[4-(hydroxymethyl)-3-(methylsulfonyl)phenyl]-2-(propan-2-yl)piperazin-1-yl]-4-(trifluoromethyl)pyrimidin-5-yl}methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 67S sing 1 n n C9 C8 67S sing 2 n n F1 C7 67S sing 3 n n F2 C7 67S sing 4 n n C8 C10 67S doub 5 n y C8 C6 67S sing 6 n y C10 N3 67S sing 7 n y C7 C6 67S sing 8 n n C7 F3 67S sing 9 n n C6 N2 67S doub 10 n y N3 C5 67S doub 11 n y N2 C5 67S sing 12 n y C5 N1 67S sing 13 n n N1 C4 67S sing 14 n n N1 C11 67S sing 15 n n C4 C21 67S sing 16 n n C4 C2 67S sing 17 n n C1 C2 67S sing 18 n n C21 N4 67S sing 19 n n C11 C12 67S sing 20 n n C2 C3 67S sing 21 n n C12 N4 67S sing 22 n n N4 C13 67S sing 23 n n C13 C14 67S doub 24 n y C13 C20 67S sing 25 n y C14 C15 67S sing 26 n y C20 C18 67S doub 27 n y C15 C16 67S doub 28 n y C18 C16 67S sing 29 n y C18 S 67S sing 30 n n C16 C17 67S sing 31 n n C19 S 67S sing 32 n n S O3 67S doub 33 n n S O4 67S doub 34 n n C17 O2 67S sing 35 n n C19 H1 67S sing 36 n n C19 H2 67S sing 37 n n C19 H3 67S sing 38 n n C20 H4 67S sing 39 n n C17 H5 67S sing 40 n n C17 H6 67S sing 41 n n O2 H7 67S sing 42 n n C15 H8 67S sing 43 n n C14 H9 67S sing 44 n n C21 H10 67S sing 45 n n C21 H11 67S sing 46 n n C4 H12 67S sing 47 n n C2 H13 67S sing 48 n n C3 H14 67S sing 49 n n C3 H15 67S sing 50 n n C3 H16 67S sing 51 n n C1 H17 67S sing 52 n n C1 H18 67S sing 53 n n C1 H19 67S sing 54 n n C12 H20 67S sing 55 n n C12 H21 67S sing 56 n n C11 H22 67S sing 57 n n C11 H23 67S sing 58 n n C10 H24 67S sing 59 n n C9 H25 67S sing 60 n n C9 H26 67S sing 61 n n O1 H27 67S sing 62 n n # _atom_sites.entry_id 5I4V _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 67S A 1 501 1 67S 766 . F 3 67S E 1 501 1 67S 766 . G 4 HOH A 1 601 39 HOH HOH . G 4 HOH A 2 602 31 HOH HOH . G 4 HOH A 3 603 35 HOH HOH . G 4 HOH A 4 604 2 HOH HOH . G 4 HOH A 5 605 5 HOH HOH . G 4 HOH A 6 606 34 HOH HOH . G 4 HOH A 7 607 3 HOH HOH . G 4 HOH A 8 608 7 HOH HOH . G 4 HOH A 9 609 32 HOH HOH . G 4 HOH A 10 610 24 HOH HOH . G 4 HOH A 11 611 4 HOH HOH . G 4 HOH A 12 612 27 HOH HOH . G 4 HOH A 13 613 1 HOH HOH . G 4 HOH A 14 614 20 HOH HOH . H 4 HOH B 1 601 30 HOH HOH . H 4 HOH B 2 602 11 HOH HOH . H 4 HOH B 3 603 19 HOH HOH . H 4 HOH B 4 604 36 HOH HOH . H 4 HOH B 5 605 13 HOH HOH . H 4 HOH B 6 606 9 HOH HOH . H 4 HOH B 7 607 25 HOH HOH . I 4 HOH E 1 601 41 HOH HOH . I 4 HOH E 2 602 16 HOH HOH . I 4 HOH E 3 603 40 HOH HOH . I 4 HOH E 4 604 10 HOH HOH . I 4 HOH E 5 605 8 HOH HOH . I 4 HOH E 6 606 28 HOH HOH . I 4 HOH E 7 607 17 HOH HOH . I 4 HOH E 8 608 23 HOH HOH . I 4 HOH E 9 609 42 HOH HOH . I 4 HOH E 10 610 21 HOH HOH . I 4 HOH E 11 611 18 HOH HOH . I 4 HOH E 12 612 15 HOH HOH . J 4 HOH F 1 601 38 HOH HOH . J 4 HOH F 2 602 26 HOH HOH . J 4 HOH F 3 603 37 HOH HOH . J 4 HOH F 4 604 14 HOH HOH . J 4 HOH F 5 605 6 HOH HOH . J 4 HOH F 6 606 12 HOH HOH . J 4 HOH F 7 607 29 HOH HOH . J 4 HOH F 8 608 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 67S . . . E 3 -8.32 6.12 -28.65 1 37.25 ? O4 67S 501 A 1 HETATM 2 S S 67S . . . E 3 -8.794 6.233 -27.303 1 38.19 ? S 67S 501 A 1 HETATM 3 O O3 67S . . . E 3 -10.021 5.512 -27.107 1 39.23 ? O3 67S 501 A 1 HETATM 4 C C19 67S . . . E 3 -9.138 7.822 -27.051 1 37.32 ? C19 67S 501 A 1 HETATM 5 C C18 67S . . . E 3 -7.752 5.6 -26.248 1 40.39 ? C18 67S 501 A 1 HETATM 6 C C20 67S . . . E 3 -7.252 6.381 -25.202 1 38.9 ? C20 67S 501 A 1 HETATM 7 C C16 67S . . . E 3 -7.354 4.257 -26.333 1 42.47 ? C16 67S 501 A 1 HETATM 8 C C17 67S . . . E 3 -7.824 3.281 -27.403 1 45.7 ? C17 67S 501 A 1 HETATM 9 O O2 67S . . . E 3 -8.925 2.548 -26.853 1 53.67 ? O2 67S 501 A 1 HETATM 10 C C15 67S . . . E 3 -6.476 3.742 -25.402 1 40.96 ? C15 67S 501 A 1 HETATM 11 C C14 67S . . . E 3 -5.983 4.532 -24.384 1 40.35 ? C14 67S 501 A 1 HETATM 12 C C13 67S . . . E 3 -6.369 5.864 -24.258 1 39.58 ? C13 67S 501 A 1 HETATM 13 N N4 67S . . . E 3 -5.811 6.684 -23.166 1 41.87 ? N4 67S 501 A 1 HETATM 14 C C21 67S . . . E 3 -5.783 5.97 -21.898 1 42.8 ? C21 67S 501 A 1 HETATM 15 C C4 67S . . . E 3 -4.819 6.662 -20.95 1 42.04 ? C4 67S 501 A 1 HETATM 16 C C2 67S . . . E 3 -3.388 6.671 -21.49 1 42.09 ? C2 67S 501 A 1 HETATM 17 C C3 67S . . . E 3 -2.6 7.918 -21.105 1 41.79 ? C3 67S 501 A 1 HETATM 18 C C1 67S . . . E 3 -2.661 5.461 -20.911 1 42.52 ? C1 67S 501 A 1 HETATM 19 C C12 67S . . . E 3 -6.406 8.011 -22.954 1 43.19 ? C12 67S 501 A 1 HETATM 20 C C11 67S . . . E 3 -5.783 8.824 -21.801 1 43.5 ? C11 67S 501 A 1 HETATM 21 N N1 67S . . . E 3 -5.334 7.99 -20.699 1 44.02 ? N1 67S 501 A 1 HETATM 22 C C5 67S . . . E 3 -5.374 8.345 -19.402 1 51.59 ? C5 67S 501 A 1 HETATM 23 N N2 67S . . . E 3 -5.811 9.523 -18.942 1 54.36 ? N2 67S 501 A 1 HETATM 24 C C6 67S . . . E 3 -5.794 9.746 -17.605 1 68.31 ? C6 67S 501 A 1 HETATM 25 C C7 67S . . . E 3 -6.307 11.076 -17.11 1 81.13 ? C7 67S 501 A 1 HETATM 26 F F2 67S . . . E 3 -5.457 11.598 -16.245 1 89.05 ? F2 67S 501 A 1 HETATM 27 F F1 67S . . . E 3 -6.447 11.855 -18.174 1 93.54 ? F1 67S 501 A 1 HETATM 28 F F3 67S . . . E 3 -7.463 10.875 -16.497 1 83.26 ? F3 67S 501 A 1 HETATM 29 N N3 67S . . . E 3 -4.926 7.419 -18.526 1 60.48 ? N3 67S 501 A 1 HETATM 30 C C10 67S . . . E 3 -4.888 7.597 -17.195 1 63.46 ? C10 67S 501 A 1 HETATM 31 C C8 67S . . . E 3 -5.333 8.8 -16.689 1 66.76 ? C8 67S 501 A 1 HETATM 32 C C9 67S . . . E 3 -5.311 9.047 -15.18 1 69.89 ? C9 67S 501 A 1 HETATM 33 O O1 67S . . . E 3 -4.707 7.938 -14.505 1 77.72 ? O1 67S 501 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #