data_5I4V # _model_server_result.job_id KwDm-7nUkms--09oEpDHQA _model_server_result.datetime_utc '2024-11-05 13:51:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5I4V # _exptl.entry_id 5I4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.524 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {2-[(2R)-4-[4-(hydroxymethyl)-3-(methylsulfonyl)phenyl]-2-(propan-2-yl)piperazin-1-yl]-4-(trifluoromethyl)pyrimidin-5-yl}methanol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I4V _cell.length_a 68.637 _cell.length_b 101.221 _cell.length_c 143.274 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H27 F3 N4 O4 S' _chem_comp.formula_weight 488.524 _chem_comp.id 67S _chem_comp.mon_nstd_flag . _chem_comp.name {2-[(2R)-4-[4-(hydroxymethyl)-3-(methylsulfonyl)phenyl]-2-(propan-2-yl)piperazin-1-yl]-4-(trifluoromethyl)pyrimidin-5-yl}methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 67S sing 1 n n C9 C8 67S sing 2 n n F1 C7 67S sing 3 n n F2 C7 67S sing 4 n n C8 C10 67S doub 5 n y C8 C6 67S sing 6 n y C10 N3 67S sing 7 n y C7 C6 67S sing 8 n n C7 F3 67S sing 9 n n C6 N2 67S doub 10 n y N3 C5 67S doub 11 n y N2 C5 67S sing 12 n y C5 N1 67S sing 13 n n N1 C4 67S sing 14 n n N1 C11 67S sing 15 n n C4 C21 67S sing 16 n n C4 C2 67S sing 17 n n C1 C2 67S sing 18 n n C21 N4 67S sing 19 n n C11 C12 67S sing 20 n n C2 C3 67S sing 21 n n C12 N4 67S sing 22 n n N4 C13 67S sing 23 n n C13 C14 67S doub 24 n y C13 C20 67S sing 25 n y C14 C15 67S sing 26 n y C20 C18 67S doub 27 n y C15 C16 67S doub 28 n y C18 C16 67S sing 29 n y C18 S 67S sing 30 n n C16 C17 67S sing 31 n n C19 S 67S sing 32 n n S O3 67S doub 33 n n S O4 67S doub 34 n n C17 O2 67S sing 35 n n C19 H1 67S sing 36 n n C19 H2 67S sing 37 n n C19 H3 67S sing 38 n n C20 H4 67S sing 39 n n C17 H5 67S sing 40 n n C17 H6 67S sing 41 n n O2 H7 67S sing 42 n n C15 H8 67S sing 43 n n C14 H9 67S sing 44 n n C21 H10 67S sing 45 n n C21 H11 67S sing 46 n n C4 H12 67S sing 47 n n C2 H13 67S sing 48 n n C3 H14 67S sing 49 n n C3 H15 67S sing 50 n n C3 H16 67S sing 51 n n C1 H17 67S sing 52 n n C1 H18 67S sing 53 n n C1 H19 67S sing 54 n n C12 H20 67S sing 55 n n C12 H21 67S sing 56 n n C11 H22 67S sing 57 n n C11 H23 67S sing 58 n n C10 H24 67S sing 59 n n C9 H25 67S sing 60 n n C9 H26 67S sing 61 n n O1 H27 67S sing 62 n n # _atom_sites.entry_id 5I4V _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 67S A 1 501 1 67S 766 . F 3 67S E 1 501 1 67S 766 . G 4 HOH A 1 601 39 HOH HOH . G 4 HOH A 2 602 31 HOH HOH . G 4 HOH A 3 603 35 HOH HOH . G 4 HOH A 4 604 2 HOH HOH . G 4 HOH A 5 605 5 HOH HOH . G 4 HOH A 6 606 34 HOH HOH . G 4 HOH A 7 607 3 HOH HOH . G 4 HOH A 8 608 7 HOH HOH . G 4 HOH A 9 609 32 HOH HOH . G 4 HOH A 10 610 24 HOH HOH . G 4 HOH A 11 611 4 HOH HOH . G 4 HOH A 12 612 27 HOH HOH . G 4 HOH A 13 613 1 HOH HOH . G 4 HOH A 14 614 20 HOH HOH . H 4 HOH B 1 601 30 HOH HOH . H 4 HOH B 2 602 11 HOH HOH . H 4 HOH B 3 603 19 HOH HOH . H 4 HOH B 4 604 36 HOH HOH . H 4 HOH B 5 605 13 HOH HOH . H 4 HOH B 6 606 9 HOH HOH . H 4 HOH B 7 607 25 HOH HOH . I 4 HOH E 1 601 41 HOH HOH . I 4 HOH E 2 602 16 HOH HOH . I 4 HOH E 3 603 40 HOH HOH . I 4 HOH E 4 604 10 HOH HOH . I 4 HOH E 5 605 8 HOH HOH . I 4 HOH E 6 606 28 HOH HOH . I 4 HOH E 7 607 17 HOH HOH . I 4 HOH E 8 608 23 HOH HOH . I 4 HOH E 9 609 42 HOH HOH . I 4 HOH E 10 610 21 HOH HOH . I 4 HOH E 11 611 18 HOH HOH . I 4 HOH E 12 612 15 HOH HOH . J 4 HOH F 1 601 38 HOH HOH . J 4 HOH F 2 602 26 HOH HOH . J 4 HOH F 3 603 37 HOH HOH . J 4 HOH F 4 604 14 HOH HOH . J 4 HOH F 5 605 6 HOH HOH . J 4 HOH F 6 606 12 HOH HOH . J 4 HOH F 7 607 29 HOH HOH . J 4 HOH F 8 608 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 67S . . . F 3 -22.766 7.242 7.012 1 41.16 ? O4 67S 501 E 1 HETATM 2 S S 67S . . . F 3 -23.161 6.832 8.329 1 41.76 ? S 67S 501 E 1 HETATM 3 O O3 67S . . . F 3 -22.663 5.497 8.556 1 43.33 ? O3 67S 501 E 1 HETATM 4 C C19 67S . . . F 3 -24.794 6.741 8.382 1 41.31 ? C19 67S 501 E 1 HETATM 5 C C18 67S . . . F 3 -22.565 7.882 9.404 1 44.28 ? C18 67S 501 E 1 HETATM 6 C C20 67S . . . F 3 -23.39 8.392 10.418 1 43.41 ? C20 67S 501 E 1 HETATM 7 C C16 67S . . . F 3 -21.217 8.318 9.343 1 44.38 ? C16 67S 501 E 1 HETATM 8 C C17 67S . . . F 3 -20.189 7.845 8.32 1 45.96 ? C17 67S 501 E 1 HETATM 9 O O2 67S . . . F 3 -19.508 6.729 8.921 1 48.13 ? O2 67S 501 E 1 HETATM 10 C C15 67S . . . F 3 -20.734 9.215 10.273 1 41.1 ? C15 67S 501 E 1 HETATM 11 C C14 67S . . . F 3 -21.57 9.706 11.253 1 43.05 ? C14 67S 501 E 1 HETATM 12 C C13 67S . . . F 3 -22.902 9.305 11.353 1 43.41 ? C13 67S 501 E 1 HETATM 13 N N4 67S . . . F 3 -23.735 9.871 12.422 1 47.59 ? N4 67S 501 E 1 HETATM 14 C C21 67S . . . F 3 -23.041 9.869 13.697 1 48.65 ? C21 67S 501 E 1 HETATM 15 C C4 67S . . . F 3 -23.704 10.841 14.651 1 51.14 ? C4 67S 501 E 1 HETATM 16 C C2 67S . . . F 3 -23.532 12.306 14.257 1 52.34 ? C2 67S 501 E 1 HETATM 17 C C3 67S . . . F 3 -24.564 12.839 13.292 1 55.56 ? C3 67S 501 E 1 HETATM 18 C C1 67S . . . F 3 -23.714 13.181 15.479 1 56.01 ? C1 67S 501 E 1 HETATM 19 C C12 67S . . . F 3 -25.077 9.307 12.59 1 49.13 ? C12 67S 501 E 1 HETATM 20 C C11 67S . . . F 3 -25.904 10.03 13.66 1 51.05 ? C11 67S 501 E 1 HETATM 21 N N1 67S . . . F 3 -25.089 10.43 14.809 1 55.89 ? N1 67S 501 E 1 HETATM 22 C C5 67S . . . F 3 -25.516 10.368 16.098 1 68.56 ? C5 67S 501 E 1 HETATM 23 N N2 67S . . . F 3 -26.711 9.868 16.495 1 75.26 ? N2 67S 501 E 1 HETATM 24 C C6 67S . . . F 3 -27.014 9.837 17.824 1 89.1 ? C6 67S 501 E 1 HETATM 25 C C7 67S . . . F 3 -28.353 9.277 18.256 1 106.12 ? C7 67S 501 E 1 HETATM 26 F F2 67S . . . F 3 -29.009 10.188 18.958 1 109.54 ? F2 67S 501 E 1 HETATM 27 F F1 67S . . . F 3 -29.037 8.937 17.171 1 126.05 ? F1 67S 501 E 1 HETATM 28 F F3 67S . . . F 3 -28.117 8.214 19.011 1 113 ? F3 67S 501 E 1 HETATM 29 N N3 67S . . . F 3 -24.65 10.804 17.047 1 74.44 ? N3 67S 501 E 1 HETATM 30 C C10 67S . . . F 3 -24.912 10.794 18.365 1 77.19 ? C10 67S 501 E 1 HETATM 31 C C8 67S . . . F 3 -26.124 10.299 18.796 1 80.58 ? C8 67S 501 E 1 HETATM 32 C C9 67S . . . F 3 -26.436 10.277 20.289 1 81.27 ? C9 67S 501 E 1 HETATM 33 O O1 67S . . . F 3 -25.415 10.965 21.017 1 84.01 ? O1 67S 501 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 33 #