data_5I4Z
#
_model_server_result.job_id            a_KJoCgYNbMIQ1wt9p3sgA 
_model_server_result.datetime_utc      '2024-11-04 22:52:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i4z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    5I4Z 
#
_exptl.entry_id    5I4Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5I4Z 
_cell.length_a            65.7 
_cell.length_b            65.7 
_cell.length_c            149.5 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I4Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 117 A CYS 91 1_555 B SG CYS 117 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 K O HOH . A HOH 225 1_555 J K K . B K 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc2 B OD2 ASP 58 B ASP 32 1_555 I K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc3 B OD1 ASN 65 B ASN 39 1_555 I K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc4 B O ASN 65 B ASN 39 1_555 J K K . B K 104 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc5 B OE1 GLU 67 B GLU 41 1_555 J K K . B K 104 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc6 B O ASN 115 B ASN 89 1_555 I K K . B K 103 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc7 B O SER 116 B SER 90 1_555 J K K . B K 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc8 I K K . B K 103 1_555 L O HOH . B HOH 227 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? 
metalc ? metalc9 I K K . B K 103 1_555 L O HOH . B HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc10 J K K . B K 104 1_555 L O HOH . B HOH 237 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5I4Z 
_atom_sites.fract_transf_matrix[1][1]    0.015221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006689 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 101 2 GOL GOL . 
D 2 GOL A 1 102 3 GOL GOL . 
E 3 CL A 1 103 6 CL CL . 
F 3 CL A 1 104 7 CL CL . 
G 2 GOL B 1 101 1 GOL GOL . 
H 3 CL B 1 102 5 CL CL . 
I 4 K B 1 103 9 K K . 
J 4 K B 1 104 10 K K . 
K 5 HOH A 1 201 71 HOH HOH . 
K 5 HOH A 2 202 97 HOH HOH . 
K 5 HOH A 3 203 76 HOH HOH . 
K 5 HOH A 4 204 22 HOH HOH . 
K 5 HOH A 5 205 42 HOH HOH . 
K 5 HOH A 6 206 11 HOH HOH . 
K 5 HOH A 7 207 72 HOH HOH . 
K 5 HOH A 8 208 52 HOH HOH . 
K 5 HOH A 9 209 66 HOH HOH . 
K 5 HOH A 10 210 26 HOH HOH . 
K 5 HOH A 11 211 32 HOH HOH . 
K 5 HOH A 12 212 4 HOH HOH . 
K 5 HOH A 13 213 16 HOH HOH . 
K 5 HOH A 14 214 83 HOH HOH . 
K 5 HOH A 15 215 80 HOH HOH . 
K 5 HOH A 16 216 60 HOH HOH . 
K 5 HOH A 17 217 43 HOH HOH . 
K 5 HOH A 18 218 45 HOH HOH . 
K 5 HOH A 19 219 47 HOH HOH . 
K 5 HOH A 20 220 35 HOH HOH . 
K 5 HOH A 21 221 8 HOH HOH . 
K 5 HOH A 22 222 21 HOH HOH . 
K 5 HOH A 23 223 6 HOH HOH . 
K 5 HOH A 24 224 99 HOH HOH . 
K 5 HOH A 25 225 86 HOH HOH . 
K 5 HOH A 26 226 24 HOH HOH . 
K 5 HOH A 27 227 44 HOH HOH . 
K 5 HOH A 28 228 69 HOH HOH . 
K 5 HOH A 29 229 57 HOH HOH . 
K 5 HOH A 30 230 19 HOH HOH . 
K 5 HOH A 31 231 67 HOH HOH . 
K 5 HOH A 32 232 9 HOH HOH . 
K 5 HOH A 33 233 27 HOH HOH . 
K 5 HOH A 34 234 5 HOH HOH . 
K 5 HOH A 35 235 101 HOH HOH . 
K 5 HOH A 36 236 70 HOH HOH . 
K 5 HOH A 37 237 91 HOH HOH . 
K 5 HOH A 38 238 104 HOH HOH . 
K 5 HOH A 39 239 95 HOH HOH . 
K 5 HOH A 40 240 108 HOH HOH . 
K 5 HOH A 41 241 78 HOH HOH . 
K 5 HOH A 42 242 58 HOH HOH . 
K 5 HOH A 43 243 114 HOH HOH . 
K 5 HOH A 44 244 7 HOH HOH . 
K 5 HOH A 45 245 111 HOH HOH . 
K 5 HOH A 46 246 94 HOH HOH . 
K 5 HOH A 47 247 37 HOH HOH . 
K 5 HOH A 48 248 39 HOH HOH . 
K 5 HOH A 49 249 68 HOH HOH . 
K 5 HOH A 50 250 41 HOH HOH . 
K 5 HOH A 51 251 92 HOH HOH . 
K 5 HOH A 52 252 59 HOH HOH . 
K 5 HOH A 53 253 75 HOH HOH . 
K 5 HOH A 54 254 105 HOH HOH . 
K 5 HOH A 55 255 85 HOH HOH . 
K 5 HOH A 56 256 93 HOH HOH . 
K 5 HOH A 57 257 96 HOH HOH . 
K 5 HOH A 58 258 53 HOH HOH . 
L 5 HOH B 1 201 74 HOH HOH . 
L 5 HOH B 2 202 30 HOH HOH . 
L 5 HOH B 3 203 64 HOH HOH . 
L 5 HOH B 4 204 88 HOH HOH . 
L 5 HOH B 5 205 36 HOH HOH . 
L 5 HOH B 6 206 17 HOH HOH . 
L 5 HOH B 7 207 25 HOH HOH . 
L 5 HOH B 8 208 28 HOH HOH . 
L 5 HOH B 9 209 10 HOH HOH . 
L 5 HOH B 10 210 20 HOH HOH . 
L 5 HOH B 11 211 81 HOH HOH . 
L 5 HOH B 12 212 3 HOH HOH . 
L 5 HOH B 13 213 29 HOH HOH . 
L 5 HOH B 14 214 1 HOH HOH . 
L 5 HOH B 15 215 13 HOH HOH . 
L 5 HOH B 16 216 84 HOH HOH . 
L 5 HOH B 17 217 51 HOH HOH . 
L 5 HOH B 18 218 14 HOH HOH . 
L 5 HOH B 19 219 49 HOH HOH . 
L 5 HOH B 20 220 2 HOH HOH . 
L 5 HOH B 21 221 15 HOH HOH . 
L 5 HOH B 22 222 40 HOH HOH . 
L 5 HOH B 23 223 89 HOH HOH . 
L 5 HOH B 24 224 48 HOH HOH . 
L 5 HOH B 25 225 109 HOH HOH . 
L 5 HOH B 26 226 12 HOH HOH . 
L 5 HOH B 27 227 82 HOH HOH . 
L 5 HOH B 28 228 63 HOH HOH . 
L 5 HOH B 29 229 55 HOH HOH . 
L 5 HOH B 30 230 18 HOH HOH . 
L 5 HOH B 31 231 46 HOH HOH . 
L 5 HOH B 32 232 98 HOH HOH . 
L 5 HOH B 33 233 90 HOH HOH . 
L 5 HOH B 34 234 106 HOH HOH . 
L 5 HOH B 35 235 113 HOH HOH . 
L 5 HOH B 36 236 112 HOH HOH . 
L 5 HOH B 37 237 100 HOH HOH . 
L 5 HOH B 38 238 65 HOH HOH . 
L 5 HOH B 39 239 102 HOH HOH . 
L 5 HOH B 40 240 33 HOH HOH . 
L 5 HOH B 41 241 38 HOH HOH . 
L 5 HOH B 42 242 110 HOH HOH . 
L 5 HOH B 43 243 87 HOH HOH . 
L 5 HOH B 44 244 62 HOH HOH . 
L 5 HOH B 45 245 61 HOH HOH . 
L 5 HOH B 46 246 79 HOH HOH . 
L 5 HOH B 47 247 56 HOH HOH . 
L 5 HOH B 48 248 23 HOH HOH . 
L 5 HOH B 49 249 50 HOH HOH . 
L 5 HOH B 50 250 103 HOH HOH . 
L 5 HOH B 51 251 73 HOH HOH . 
L 5 HOH B 52 252 31 HOH HOH . 
L 5 HOH B 53 253 107 HOH HOH . 
L 5 HOH B 54 254 34 HOH HOH . 
L 5 HOH B 55 255 54 HOH HOH . 
L 5 HOH B 56 256 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . A . G 2 32.862 25.053 1.12 0.43 47.06 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . A . G 2 32.082 24.232 1.959 0.43 51.98 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . A . G 2 32.989 24.415 -0.259 0.43 56.7 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . A . G 2 32.168 23.263 -0.364 0.43 56.41 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . A . G 2 32.598 25.455 -1.299 0.43 39 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . A . G 2 32.709 24.915 -2.59 0.43 32.34 ? O3 GOL 101 B 1 
HETATM 7 H H11 GOL . A . G 2 33.852 25.187 1.555 0.43 56.47 ? H11 GOL 101 B 1 
HETATM 8 H H12 GOL . A . G 2 32.396 26.034 1.029 0.43 56.47 ? H12 GOL 101 B 1 
HETATM 9 H HO1 GOL . A . G 2 32.059 24.614 2.861 0.43 62.37 ? HO1 GOL 101 B 1 
HETATM 10 H H2 GOL . A . G 2 34.031 24.139 -0.418 0.43 68.04 ? H2 GOL 101 B 1 
HETATM 11 H HO2 GOL . A . G 2 31.231 23.517 -0.233 0.43 67.69 ? HO2 GOL 101 B 1 
HETATM 12 H H31 GOL . A . G 2 33.249 26.325 -1.209 0.43 46.8 ? H31 GOL 101 B 1 
HETATM 13 H H32 GOL . A . G 2 31.573 25.781 -1.124 0.43 46.8 ? H32 GOL 101 B 1 
HETATM 14 H HO3 GOL . A . G 2 32.447 23.97 -2.572 0.43 38.81 ? HO3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           14 
#