data_5I53 # _model_server_result.job_id bFdGODnqAjY8YuC6Bwiuug _model_server_result.datetime_utc '2025-01-10 20:21:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5I53 # _exptl.entry_id 5I53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I53 _cell.length_a 78.75 _cell.length_b 78.75 _cell.length_c 36.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 358 n n C N1 URE sing 359 n n C N2 URE sing 360 n n N1 HN11 URE sing 361 n n N1 HN12 URE sing 362 n n N2 HN21 URE sing 363 n n N2 HN22 URE sing 364 n n # _atom_sites.entry_id 5I53 _atom_sites.fract_transf_matrix[1][1] 0.012698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URE A 1 201 1 URE DRG . C 2 URE A 1 202 2 URE DRG . D 2 URE A 1 203 3 URE DRG . E 2 URE A 1 204 4 URE DRG . F 2 URE A 1 205 5 URE DRG . G 2 URE A 1 206 6 URE DRG . H 2 URE A 1 207 7 URE DRG . I 2 URE A 1 208 8 URE DRG . J 2 URE A 1 209 9 URE DRG . K 2 URE A 1 210 10 URE DRG . L 2 URE A 1 211 11 URE DRG . M 2 URE A 1 212 12 URE DRG . N 3 CL A 1 213 1 CL CL . O 4 HOH A 1 301 23 HOH HOH . O 4 HOH A 2 302 61 HOH HOH . O 4 HOH A 3 303 160 HOH HOH . O 4 HOH A 4 304 1 HOH HOH . O 4 HOH A 5 305 63 HOH HOH . O 4 HOH A 6 306 146 HOH HOH . O 4 HOH A 7 307 144 HOH HOH . O 4 HOH A 8 308 114 HOH HOH . O 4 HOH A 9 309 134 HOH HOH . O 4 HOH A 10 310 120 HOH HOH . O 4 HOH A 11 311 81 HOH HOH . O 4 HOH A 12 312 96 HOH HOH . O 4 HOH A 13 313 107 HOH HOH . O 4 HOH A 14 314 39 HOH HOH . O 4 HOH A 15 315 85 HOH HOH . O 4 HOH A 16 316 133 HOH HOH . O 4 HOH A 17 317 10 HOH HOH . O 4 HOH A 18 318 137 HOH HOH . O 4 HOH A 19 319 26 HOH HOH . O 4 HOH A 20 320 128 HOH HOH . O 4 HOH A 21 321 143 HOH HOH . O 4 HOH A 22 322 58 HOH HOH . O 4 HOH A 23 323 37 HOH HOH . O 4 HOH A 24 324 60 HOH HOH . O 4 HOH A 25 325 27 HOH HOH . O 4 HOH A 26 326 94 HOH HOH . O 4 HOH A 27 327 2 HOH HOH . O 4 HOH A 28 328 46 HOH HOH . O 4 HOH A 29 329 36 HOH HOH . O 4 HOH A 30 330 116 HOH HOH . O 4 HOH A 31 331 93 HOH HOH . O 4 HOH A 32 332 51 HOH HOH . O 4 HOH A 33 333 97 HOH HOH . O 4 HOH A 34 334 12 HOH HOH . O 4 HOH A 35 335 72 HOH HOH . O 4 HOH A 36 336 3 HOH HOH . O 4 HOH A 37 337 20 HOH HOH . O 4 HOH A 38 338 21 HOH HOH . O 4 HOH A 39 339 4 HOH HOH . O 4 HOH A 40 340 14 HOH HOH . O 4 HOH A 41 341 82 HOH HOH . O 4 HOH A 42 342 41 HOH HOH . O 4 HOH A 43 343 16 HOH HOH . O 4 HOH A 44 344 106 HOH HOH . O 4 HOH A 45 345 50 HOH HOH . O 4 HOH A 46 346 29 HOH HOH . O 4 HOH A 47 347 47 HOH HOH . O 4 HOH A 48 348 18 HOH HOH . O 4 HOH A 49 349 113 HOH HOH . O 4 HOH A 50 350 79 HOH HOH . O 4 HOH A 51 351 78 HOH HOH . O 4 HOH A 52 352 80 HOH HOH . O 4 HOH A 53 353 57 HOH HOH . O 4 HOH A 54 354 13 HOH HOH . O 4 HOH A 55 355 148 HOH HOH . O 4 HOH A 56 356 9 HOH HOH . O 4 HOH A 57 357 8 HOH HOH . O 4 HOH A 58 358 54 HOH HOH . O 4 HOH A 59 359 88 HOH HOH . O 4 HOH A 60 360 138 HOH HOH . O 4 HOH A 61 361 66 HOH HOH . O 4 HOH A 62 362 6 HOH HOH . O 4 HOH A 63 363 34 HOH HOH . O 4 HOH A 64 364 42 HOH HOH . O 4 HOH A 65 365 28 HOH HOH . O 4 HOH A 66 366 32 HOH HOH . O 4 HOH A 67 367 147 HOH HOH . O 4 HOH A 68 368 76 HOH HOH . O 4 HOH A 69 369 5 HOH HOH . O 4 HOH A 70 370 48 HOH HOH . O 4 HOH A 71 371 67 HOH HOH . O 4 HOH A 72 372 49 HOH HOH . O 4 HOH A 73 373 64 HOH HOH . O 4 HOH A 74 374 84 HOH HOH . O 4 HOH A 75 375 129 HOH HOH . O 4 HOH A 76 376 68 HOH HOH . O 4 HOH A 77 377 158 HOH HOH . O 4 HOH A 78 378 92 HOH HOH . O 4 HOH A 79 379 55 HOH HOH . O 4 HOH A 80 380 163 HOH HOH . O 4 HOH A 81 381 40 HOH HOH . O 4 HOH A 82 382 56 HOH HOH . O 4 HOH A 83 383 119 HOH HOH . O 4 HOH A 84 384 136 HOH HOH . O 4 HOH A 85 385 73 HOH HOH . O 4 HOH A 86 386 65 HOH HOH . O 4 HOH A 87 387 153 HOH HOH . O 4 HOH A 88 388 11 HOH HOH . O 4 HOH A 89 389 44 HOH HOH . O 4 HOH A 90 390 52 HOH HOH . O 4 HOH A 91 391 164 HOH HOH . O 4 HOH A 92 392 31 HOH HOH . O 4 HOH A 93 393 99 HOH HOH . O 4 HOH A 94 394 62 HOH HOH . O 4 HOH A 95 395 45 HOH HOH . O 4 HOH A 96 396 33 HOH HOH . O 4 HOH A 97 397 101 HOH HOH . O 4 HOH A 98 398 38 HOH HOH . O 4 HOH A 99 399 35 HOH HOH . O 4 HOH A 100 400 22 HOH HOH . O 4 HOH A 101 401 24 HOH HOH . O 4 HOH A 102 402 77 HOH HOH . O 4 HOH A 103 403 167 HOH HOH . O 4 HOH A 104 404 7 HOH HOH . O 4 HOH A 105 405 30 HOH HOH . O 4 HOH A 106 406 105 HOH HOH . O 4 HOH A 107 407 103 HOH HOH . O 4 HOH A 108 408 19 HOH HOH . O 4 HOH A 109 409 17 HOH HOH . O 4 HOH A 110 410 74 HOH HOH . O 4 HOH A 111 411 59 HOH HOH . O 4 HOH A 112 412 71 HOH HOH . O 4 HOH A 113 413 150 HOH HOH . O 4 HOH A 114 414 91 HOH HOH . O 4 HOH A 115 415 43 HOH HOH . O 4 HOH A 116 416 53 HOH HOH . O 4 HOH A 117 417 15 HOH HOH . O 4 HOH A 118 418 100 HOH HOH . O 4 HOH A 119 419 142 HOH HOH . O 4 HOH A 120 420 102 HOH HOH . O 4 HOH A 121 421 89 HOH HOH . O 4 HOH A 122 422 166 HOH HOH . O 4 HOH A 123 423 123 HOH HOH . O 4 HOH A 124 424 111 HOH HOH . O 4 HOH A 125 425 155 HOH HOH . O 4 HOH A 126 426 127 HOH HOH . O 4 HOH A 127 427 130 HOH HOH . O 4 HOH A 128 428 118 HOH HOH . O 4 HOH A 129 429 87 HOH HOH . O 4 HOH A 130 430 108 HOH HOH . O 4 HOH A 131 431 69 HOH HOH . O 4 HOH A 132 432 165 HOH HOH . O 4 HOH A 133 433 75 HOH HOH . O 4 HOH A 134 434 70 HOH HOH . O 4 HOH A 135 435 112 HOH HOH . O 4 HOH A 136 436 159 HOH HOH . O 4 HOH A 137 437 117 HOH HOH . O 4 HOH A 138 438 131 HOH HOH . O 4 HOH A 139 439 154 HOH HOH . O 4 HOH A 140 440 115 HOH HOH . O 4 HOH A 141 441 95 HOH HOH . O 4 HOH A 142 442 110 HOH HOH . O 4 HOH A 143 443 141 HOH HOH . O 4 HOH A 144 444 104 HOH HOH . O 4 HOH A 145 445 156 HOH HOH . O 4 HOH A 146 446 152 HOH HOH . O 4 HOH A 147 447 140 HOH HOH . O 4 HOH A 148 448 25 HOH HOH . O 4 HOH A 149 449 90 HOH HOH . O 4 HOH A 150 450 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . F 2 -12.805 12.316 23.962 1 14.43 ? C URE 205 A 1 HETATM 2 O O URE . . . F 2 -12.813 12.211 22.742 1 10.62 ? O URE 205 A 1 HETATM 3 N N1 URE . . . F 2 -12.505 13.468 24.521 1 13.75 ? N1 URE 205 A 1 HETATM 4 N N2 URE . . . F 2 -13.093 11.279 24.718 1 11.84 ? N2 URE 205 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #