data_5I55 # _model_server_result.job_id 1lUtjYjYLyUhLjN5JMhnbw _model_server_result.datetime_utc '2024-12-04 18:17:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5I55 # _exptl.entry_id 5I55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.98 _cell.angle_gamma 90 _cell.entry_id 5I55 _cell.length_a 29.46 _cell.length_b 10.51 _cell.length_c 29.71 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 10.51 0 3 'crystal symmetry operation' 1_575 x,y+2,z 1 0 0 0 1 0 0 0 1 0 21.02 0 4 'crystal symmetry operation' 1_585 x,y+3,z 1 0 0 0 1 0 0 0 1 0 31.53 0 5 'crystal symmetry operation' 1_595 x,y+4,z 1 0 0 0 1 0 0 0 1 0 42.04 0 6 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 29.46 0 0 7 'crystal symmetry operation' 1_665 x+1,y+1,z 1 0 0 0 1 0 0 0 1 29.46 10.51 0 8 'crystal symmetry operation' 1_675 x+1,y+2,z 1 0 0 0 1 0 0 0 1 29.46 21.02 0 9 'crystal symmetry operation' 1_685 x+1,y+3,z 1 0 0 0 1 0 0 0 1 29.46 31.53 0 10 'crystal symmetry operation' 1_695 x+1,y+4,z 1 0 0 0 1 0 0 0 1 29.46 42.04 0 11 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 18.340054 5.255 27.550516 12 'crystal symmetry operation' 2_666 -x+1,y+3/2,-z+1 -1 0 0 0 1 0 0 0 -1 18.340054 15.765 27.550516 13 'crystal symmetry operation' 2_676 -x+1,y+5/2,-z+1 -1 0 0 0 1 0 0 0 -1 18.340054 26.275 27.550516 14 'crystal symmetry operation' 2_686 -x+1,y+7/2,-z+1 -1 0 0 0 1 0 0 0 -1 18.340054 36.785 27.550516 15 'crystal symmetry operation' 2_696 -x+1,y+9/2,-z+1 -1 0 0 0 1 0 0 0 -1 18.340054 47.295 27.550516 16 'crystal symmetry operation' 2_756 -x+2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 47.800054 5.255 27.550516 17 'crystal symmetry operation' 2_766 -x+2,y+3/2,-z+1 -1 0 0 0 1 0 0 0 -1 47.800054 15.765 27.550516 18 'crystal symmetry operation' 2_776 -x+2,y+5/2,-z+1 -1 0 0 0 1 0 0 0 -1 47.800054 26.275 27.550516 19 'crystal symmetry operation' 2_786 -x+2,y+7/2,-z+1 -1 0 0 0 1 0 0 0 -1 47.800054 36.785 27.550516 20 'crystal symmetry operation' 2_796 -x+2,y+9/2,-z+1 -1 0 0 0 1 0 0 0 -1 47.800054 47.295 27.550516 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id MSE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MSE _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLU _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLU _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.32 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 124 n n C1 H11 MPD sing 125 n n C1 H12 MPD sing 126 n n C1 H13 MPD sing 127 n n C2 O2 MPD sing 128 n n C2 CM MPD sing 129 n n C2 C3 MPD sing 130 n n O2 HO2 MPD sing 131 n n CM HM1 MPD sing 132 n n CM HM2 MPD sing 133 n n CM HM3 MPD sing 134 n n C3 C4 MPD sing 135 n n C3 H31 MPD sing 136 n n C3 H32 MPD sing 137 n n C4 O4 MPD sing 138 n n C4 C5 MPD sing 139 n n C4 H4 MPD sing 140 n n O4 HO4 MPD sing 141 n n C5 H51 MPD sing 142 n n C5 H52 MPD sing 143 n n C5 H53 MPD sing 144 n n # _atom_sites.entry_id 5I55 _atom_sites.fract_transf_matrix[1][1] 0.033944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.095147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 101 1 MPD MPD . C 3 ACT A 1 102 1 ACT ACT . D 4 HOH A 1 201 8 HOH HOH . D 4 HOH A 2 202 14 HOH HOH . D 4 HOH A 3 203 5 HOH HOH . D 4 HOH A 4 204 4 HOH HOH . D 4 HOH A 5 205 10 HOH HOH . D 4 HOH A 6 206 9 HOH HOH . D 4 HOH A 7 207 13 HOH HOH . D 4 HOH A 8 208 2 HOH HOH . D 4 HOH A 9 209 11 HOH HOH . D 4 HOH A 10 210 7 HOH HOH . D 4 HOH A 11 211 3 HOH HOH . D 4 HOH A 12 212 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 28.213 -0.55 13.287 1 17.23 ? C1 MPD 101 A 1 HETATM 2 C C2 MPD . . . B 2 29.621 -0.06 13.545 1 19.12 ? C2 MPD 101 A 1 HETATM 3 O O2 MPD . . . B 2 30.21 -0.735 14.728 1 24.25 ? O2 MPD 101 A 1 HETATM 4 C CM MPD . . . B 2 30.433 -0.419 12.385 1 14.94 ? CM MPD 101 A 1 HETATM 5 C C3 MPD . . . B 2 29.851 1.452 13.734 1 20.26 ? C3 MPD 101 A 1 HETATM 6 C C4 MPD . . . B 2 28.798 2.396 14.188 1 20.83 ? C4 MPD 101 A 1 HETATM 7 O O4 MPD . . . B 2 27.858 1.87 15.089 1 20.74 ? O4 MPD 101 A 1 HETATM 8 C C5 MPD . . . B 2 29.367 3.734 14.588 1 19.09 ? C5 MPD 101 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #