data_5I56
#
_model_server_result.job_id            SE--Jn5ZhovBpHSuAQ-ibw 
_model_server_result.datetime_utc      '2024-11-22 12:33:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5I56 
#
_exptl.entry_id    5I56 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5I56 
_cell.length_a            54.259 
_cell.length_b            88.402 
_cell.length_c            126.146 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 236 A CYS 352 1_555 A SG CYS 290 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 170 n n 
N H GLY sing 171 n n 
N H2 GLY sing 172 n n 
CA C GLY sing 173 n n 
CA HA2 GLY sing 174 n n 
CA HA3 GLY sing 175 n n 
C O GLY doub 176 n n 
C OXT GLY sing 177 n n 
OXT HXT GLY sing 178 n n 
#
_atom_sites.entry_id                     5I56 
_atom_sites.fract_transf_matrix[1][1]    0.01843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007927 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GLY A 1 501 501 GLY GLY . 
D 4 GLU B 1 801 801 GLU GLU . 
E 5 67P B 1 802 802 67P 67P . 
F 6 HOH A 1 1101 1101 HOH HOH . 
F 6 HOH A 2 1102 1102 HOH HOH . 
F 6 HOH A 3 1103 1103 HOH HOH . 
F 6 HOH A 4 1104 1104 HOH HOH . 
F 6 HOH A 5 1105 1105 HOH HOH . 
F 6 HOH A 6 1106 1106 HOH HOH . 
F 6 HOH A 7 1107 1107 HOH HOH . 
F 6 HOH A 8 1108 1108 HOH HOH . 
F 6 HOH A 9 1109 1109 HOH HOH . 
F 6 HOH A 10 1110 1110 HOH HOH . 
F 6 HOH A 11 1111 1111 HOH HOH . 
F 6 HOH A 12 1112 1112 HOH HOH . 
F 6 HOH A 13 1113 1113 HOH HOH . 
F 6 HOH A 14 1114 1114 HOH HOH . 
F 6 HOH A 15 1115 1115 HOH HOH . 
F 6 HOH A 16 1116 1116 HOH HOH . 
F 6 HOH A 17 1117 1117 HOH HOH . 
F 6 HOH A 18 1118 1118 HOH HOH . 
F 6 HOH A 19 1119 1119 HOH HOH . 
F 6 HOH A 20 1120 1120 HOH HOH . 
F 6 HOH A 21 1121 1121 HOH HOH . 
F 6 HOH A 22 1122 1122 HOH HOH . 
F 6 HOH A 23 1123 1123 HOH HOH . 
F 6 HOH A 24 1124 1124 HOH HOH . 
F 6 HOH A 25 1125 1125 HOH HOH . 
F 6 HOH A 26 1126 1126 HOH HOH . 
F 6 HOH A 27 1127 1127 HOH HOH . 
F 6 HOH A 28 1128 1128 HOH HOH . 
F 6 HOH A 29 1129 1129 HOH HOH . 
F 6 HOH A 30 1130 1130 HOH HOH . 
F 6 HOH A 31 1131 1131 HOH HOH . 
F 6 HOH A 32 1132 1132 HOH HOH . 
F 6 HOH A 33 1133 1133 HOH HOH . 
F 6 HOH A 34 1134 1134 HOH HOH . 
F 6 HOH A 35 1135 1135 HOH HOH . 
F 6 HOH A 36 1136 1136 HOH HOH . 
F 6 HOH A 37 1137 1137 HOH HOH . 
F 6 HOH A 38 1138 1138 HOH HOH . 
F 6 HOH A 39 1139 1139 HOH HOH . 
F 6 HOH A 40 1140 1140 HOH HOH . 
F 6 HOH A 41 1141 1141 HOH HOH . 
F 6 HOH A 42 1142 1142 HOH HOH . 
F 6 HOH A 43 1143 1143 HOH HOH . 
F 6 HOH A 44 1144 1144 HOH HOH . 
F 6 HOH A 45 1145 1145 HOH HOH . 
F 6 HOH A 46 1146 1146 HOH HOH . 
F 6 HOH A 47 1147 1147 HOH HOH . 
F 6 HOH A 48 1148 1148 HOH HOH . 
F 6 HOH A 49 1149 1149 HOH HOH . 
F 6 HOH A 50 1150 1150 HOH HOH . 
F 6 HOH A 51 1151 1151 HOH HOH . 
F 6 HOH A 52 1152 1152 HOH HOH . 
F 6 HOH A 53 1153 1153 HOH HOH . 
F 6 HOH A 54 1154 1154 HOH HOH . 
F 6 HOH A 55 1155 1155 HOH HOH . 
F 6 HOH A 56 1156 1156 HOH HOH . 
F 6 HOH A 57 1157 1157 HOH HOH . 
F 6 HOH A 58 1158 1158 HOH HOH . 
F 6 HOH A 59 1159 1159 HOH HOH . 
F 6 HOH A 60 1160 1160 HOH HOH . 
F 6 HOH A 61 1161 1161 HOH HOH . 
F 6 HOH A 62 1162 1162 HOH HOH . 
F 6 HOH A 63 1163 1163 HOH HOH . 
F 6 HOH A 64 1164 1164 HOH HOH . 
F 6 HOH A 65 1165 1165 HOH HOH . 
F 6 HOH A 66 1166 1166 HOH HOH . 
F 6 HOH A 67 1167 1167 HOH HOH . 
F 6 HOH A 68 1168 1168 HOH HOH . 
F 6 HOH A 69 1169 1169 HOH HOH . 
F 6 HOH A 70 1170 1170 HOH HOH . 
F 6 HOH A 71 1171 1171 HOH HOH . 
F 6 HOH A 72 1172 1172 HOH HOH . 
F 6 HOH A 73 1173 1173 HOH HOH . 
F 6 HOH A 74 1174 1174 HOH HOH . 
F 6 HOH A 75 1175 1175 HOH HOH . 
F 6 HOH A 76 1176 1176 HOH HOH . 
F 6 HOH A 77 1177 1177 HOH HOH . 
F 6 HOH A 78 1178 1178 HOH HOH . 
F 6 HOH A 79 1179 1179 HOH HOH . 
G 6 HOH B 1 901 901 HOH HOH . 
G 6 HOH B 2 902 902 HOH HOH . 
G 6 HOH B 3 903 903 HOH HOH . 
G 6 HOH B 4 904 904 HOH HOH . 
G 6 HOH B 5 905 905 HOH HOH . 
G 6 HOH B 6 906 906 HOH HOH . 
G 6 HOH B 7 907 907 HOH HOH . 
G 6 HOH B 8 908 908 HOH HOH . 
G 6 HOH B 9 909 909 HOH HOH . 
G 6 HOH B 10 910 910 HOH HOH . 
G 6 HOH B 11 911 911 HOH HOH . 
G 6 HOH B 12 912 912 HOH HOH . 
G 6 HOH B 13 913 913 HOH HOH . 
G 6 HOH B 14 914 914 HOH HOH . 
G 6 HOH B 15 915 915 HOH HOH . 
G 6 HOH B 16 916 916 HOH HOH . 
G 6 HOH B 17 917 917 HOH HOH . 
G 6 HOH B 18 918 918 HOH HOH . 
G 6 HOH B 19 919 919 HOH HOH . 
G 6 HOH B 20 920 920 HOH HOH . 
G 6 HOH B 21 921 921 HOH HOH . 
G 6 HOH B 22 922 922 HOH HOH . 
G 6 HOH B 23 923 923 HOH HOH . 
G 6 HOH B 24 924 924 HOH HOH . 
G 6 HOH B 25 925 925 HOH HOH . 
G 6 HOH B 26 926 926 HOH HOH . 
G 6 HOH B 27 927 927 HOH HOH . 
G 6 HOH B 28 928 928 HOH HOH . 
G 6 HOH B 29 929 929 HOH HOH . 
G 6 HOH B 30 930 930 HOH HOH . 
G 6 HOH B 31 931 931 HOH HOH . 
G 6 HOH B 32 932 932 HOH HOH . 
G 6 HOH B 33 933 933 HOH HOH . 
G 6 HOH B 34 934 934 HOH HOH . 
G 6 HOH B 35 935 935 HOH HOH . 
G 6 HOH B 36 936 936 HOH HOH . 
G 6 HOH B 37 937 937 HOH HOH . 
G 6 HOH B 38 938 938 HOH HOH . 
G 6 HOH B 39 939 939 HOH HOH . 
G 6 HOH B 40 940 940 HOH HOH . 
G 6 HOH B 41 941 941 HOH HOH . 
G 6 HOH B 42 942 942 HOH HOH . 
G 6 HOH B 43 943 943 HOH HOH . 
G 6 HOH B 44 944 944 HOH HOH . 
G 6 HOH B 45 945 945 HOH HOH . 
G 6 HOH B 46 946 946 HOH HOH . 
G 6 HOH B 47 947 947 HOH HOH . 
G 6 HOH B 48 948 948 HOH HOH . 
G 6 HOH B 49 949 949 HOH HOH . 
G 6 HOH B 50 950 950 HOH HOH . 
G 6 HOH B 51 951 951 HOH HOH . 
G 6 HOH B 52 952 952 HOH HOH . 
G 6 HOH B 53 953 953 HOH HOH . 
G 6 HOH B 54 954 954 HOH HOH . 
G 6 HOH B 55 955 955 HOH HOH . 
G 6 HOH B 56 956 956 HOH HOH . 
G 6 HOH B 57 957 957 HOH HOH . 
G 6 HOH B 58 958 958 HOH HOH . 
G 6 HOH B 59 959 959 HOH HOH . 
G 6 HOH B 60 960 960 HOH HOH . 
G 6 HOH B 61 961 961 HOH HOH . 
G 6 HOH B 62 962 962 HOH HOH . 
G 6 HOH B 63 963 963 HOH HOH . 
G 6 HOH B 64 964 964 HOH HOH . 
G 6 HOH B 65 965 965 HOH HOH . 
G 6 HOH B 66 966 966 HOH HOH . 
G 6 HOH B 67 967 967 HOH HOH . 
G 6 HOH B 68 968 968 HOH HOH . 
G 6 HOH B 69 969 969 HOH HOH . 
G 6 HOH B 70 970 970 HOH HOH . 
G 6 HOH B 71 971 971 HOH HOH . 
G 6 HOH B 72 972 972 HOH HOH . 
G 6 HOH B 73 973 973 HOH HOH . 
G 6 HOH B 74 974 974 HOH HOH . 
G 6 HOH B 75 975 975 HOH HOH . 
G 6 HOH B 76 976 976 HOH HOH . 
G 6 HOH B 77 977 977 HOH HOH . 
G 6 HOH B 78 978 978 HOH HOH . 
G 6 HOH B 79 979 979 HOH HOH . 
G 6 HOH B 80 980 980 HOH HOH . 
G 6 HOH B 81 981 981 HOH HOH . 
G 6 HOH B 82 982 982 HOH HOH . 
G 6 HOH B 83 983 983 HOH HOH . 
G 6 HOH B 84 984 984 HOH HOH . 
G 6 HOH B 85 985 985 HOH HOH . 
G 6 HOH B 86 986 986 HOH HOH . 
G 6 HOH B 87 987 987 HOH HOH . 
G 6 HOH B 88 988 988 HOH HOH . 
G 6 HOH B 89 989 989 HOH HOH . 
G 6 HOH B 90 990 990 HOH HOH . 
G 6 HOH B 91 991 991 HOH HOH . 
G 6 HOH B 92 992 992 HOH HOH . 
G 6 HOH B 93 993 993 HOH HOH . 
G 6 HOH B 94 994 994 HOH HOH . 
G 6 HOH B 95 995 995 HOH HOH . 
G 6 HOH B 96 996 996 HOH HOH . 
G 6 HOH B 97 997 997 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . C 3 -8.68 11.534 -38.113 1 31.66 ? N GLY 501 A 1 
HETATM 2 C CA GLY . . . C 3 -8.471 10.704 -39.286 1 28.99 ? CA GLY 501 A 1 
HETATM 3 C C GLY . . . C 3 -8.229 9.253 -38.924 1 33.01 ? C GLY 501 A 1 
HETATM 4 O O GLY . . . C 3 -7.908 8.936 -37.773 1 25.32 ? O GLY 501 A 1 
HETATM 5 O OXT GLY . . . C 3 -8.348 8.365 -39.772 1 23.04 ? OXT GLY 501 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#