data_5I58 # _model_server_result.job_id cfzEPE0TLHonOgirL1lewg _model_server_result.datetime_utc '2024-11-08 05:58:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5I58 # _exptl.entry_id 5I58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I58 _cell.length_a 53.919 _cell.length_b 86.425 _cell.length_c 122.628 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 148 n n N H GLU sing 149 n n N H2 GLU sing 150 n n CA C GLU sing 151 n n CA CB GLU sing 152 n n CA HA GLU sing 153 n n C O GLU doub 154 n n C OXT GLU sing 155 n n CB CG GLU sing 156 n n CB HB2 GLU sing 157 n n CB HB3 GLU sing 158 n n CG CD GLU sing 159 n n CG HG2 GLU sing 160 n n CG HG3 GLU sing 161 n n CD OE1 GLU doub 162 n n CD OE2 GLU sing 163 n n OE2 HE2 GLU sing 164 n n OXT HXT GLU sing 165 n n # _atom_sites.entry_id 5I58 _atom_sites.fract_transf_matrix[1][1] 0.018546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLY A 1 1001 1001 GLY GLY . D 4 GLU B 1 301 301 GLU GLU . E 5 67R B 1 302 401 67R 67R . F 6 HOH A 1 1101 1101 HOH HOH . F 6 HOH A 2 1102 1102 HOH HOH . F 6 HOH A 3 1103 1103 HOH HOH . F 6 HOH A 4 1104 1104 HOH HOH . F 6 HOH A 5 1105 1105 HOH HOH . F 6 HOH A 6 1106 1106 HOH HOH . F 6 HOH A 7 1107 1107 HOH HOH . F 6 HOH A 8 1108 1108 HOH HOH . F 6 HOH A 9 1109 1109 HOH HOH . F 6 HOH A 10 1110 1110 HOH HOH . F 6 HOH A 11 1111 1111 HOH HOH . F 6 HOH A 12 1112 1112 HOH HOH . F 6 HOH A 13 1113 1113 HOH HOH . F 6 HOH A 14 1114 1114 HOH HOH . F 6 HOH A 15 1115 1115 HOH HOH . F 6 HOH A 16 1116 1116 HOH HOH . F 6 HOH A 17 1117 1117 HOH HOH . F 6 HOH A 18 1118 1118 HOH HOH . F 6 HOH A 19 1119 1119 HOH HOH . F 6 HOH A 20 1120 1120 HOH HOH . F 6 HOH A 21 1121 1121 HOH HOH . F 6 HOH A 22 1122 1122 HOH HOH . F 6 HOH A 23 1123 1123 HOH HOH . F 6 HOH A 24 1124 1124 HOH HOH . F 6 HOH A 25 1125 1125 HOH HOH . F 6 HOH A 26 1126 1126 HOH HOH . F 6 HOH A 27 1127 1127 HOH HOH . F 6 HOH A 28 1128 1128 HOH HOH . F 6 HOH A 29 1129 1129 HOH HOH . F 6 HOH A 30 1130 1130 HOH HOH . F 6 HOH A 31 1131 1131 HOH HOH . F 6 HOH A 32 1132 1132 HOH HOH . F 6 HOH A 33 1133 1133 HOH HOH . F 6 HOH A 34 1134 1134 HOH HOH . F 6 HOH A 35 1135 1135 HOH HOH . F 6 HOH A 36 1136 1136 HOH HOH . F 6 HOH A 37 1137 1137 HOH HOH . F 6 HOH A 38 1138 1138 HOH HOH . F 6 HOH A 39 1139 1139 HOH HOH . F 6 HOH A 40 1140 1140 HOH HOH . F 6 HOH A 41 1141 1141 HOH HOH . F 6 HOH A 42 1142 1142 HOH HOH . F 6 HOH A 43 1143 1143 HOH HOH . F 6 HOH A 44 1144 1144 HOH HOH . G 6 HOH B 1 501 501 HOH HOH . G 6 HOH B 2 502 502 HOH HOH . G 6 HOH B 3 503 503 HOH HOH . G 6 HOH B 4 504 504 HOH HOH . G 6 HOH B 5 505 505 HOH HOH . G 6 HOH B 6 506 506 HOH HOH . G 6 HOH B 7 507 507 HOH HOH . G 6 HOH B 8 508 508 HOH HOH . G 6 HOH B 9 509 509 HOH HOH . G 6 HOH B 10 510 510 HOH HOH . G 6 HOH B 11 511 511 HOH HOH . G 6 HOH B 12 512 512 HOH HOH . G 6 HOH B 13 513 513 HOH HOH . G 6 HOH B 14 514 514 HOH HOH . G 6 HOH B 15 515 515 HOH HOH . G 6 HOH B 16 516 516 HOH HOH . G 6 HOH B 17 517 517 HOH HOH . G 6 HOH B 18 518 518 HOH HOH . G 6 HOH B 19 519 519 HOH HOH . G 6 HOH B 20 520 520 HOH HOH . G 6 HOH B 21 521 521 HOH HOH . G 6 HOH B 22 522 522 HOH HOH . G 6 HOH B 23 523 523 HOH HOH . G 6 HOH B 24 524 524 HOH HOH . G 6 HOH B 25 525 525 HOH HOH . G 6 HOH B 26 526 526 HOH HOH . G 6 HOH B 27 527 527 HOH HOH . G 6 HOH B 28 528 528 HOH HOH . G 6 HOH B 29 529 529 HOH HOH . G 6 HOH B 30 530 530 HOH HOH . G 6 HOH B 31 531 531 HOH HOH . G 6 HOH B 32 532 532 HOH HOH . G 6 HOH B 33 533 533 HOH HOH . G 6 HOH B 34 534 534 HOH HOH . G 6 HOH B 35 535 535 HOH HOH . G 6 HOH B 36 536 536 HOH HOH . G 6 HOH B 37 537 537 HOH HOH . G 6 HOH B 38 538 538 HOH HOH . G 6 HOH B 39 539 539 HOH HOH . G 6 HOH B 40 540 540 HOH HOH . G 6 HOH B 41 541 541 HOH HOH . G 6 HOH B 42 542 542 HOH HOH . G 6 HOH B 43 543 543 HOH HOH . G 6 HOH B 44 544 544 HOH HOH . G 6 HOH B 45 545 545 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . D 4 -20.438 -17.022 13.219 1 20.11 ? N GLU 301 B 1 HETATM 2 C CA GLU . . . D 4 -19.676 -17.623 12.13 1 28.27 ? CA GLU 301 B 1 HETATM 3 C C GLU . . . D 4 -18.746 -16.608 11.474 1 23.68 ? C GLU 301 B 1 HETATM 4 O O GLU . . . D 4 -17.973 -16.945 10.576 1 27.52 ? O GLU 301 B 1 HETATM 5 C CB GLU . . . D 4 -20.618 -18.227 11.087 1 22.79 ? CB GLU 301 B 1 HETATM 6 C CG GLU . . . D 4 -21.241 -19.542 11.519 1 27.72 ? CG GLU 301 B 1 HETATM 7 C CD GLU . . . D 4 -20.204 -20.628 11.736 1 32.45 ? CD GLU 301 B 1 HETATM 8 O OE1 GLU . . . D 4 -19.306 -20.772 10.88 1 27.2 ? OE1 GLU 301 B 1 HETATM 9 O OE2 GLU . . . D 4 -20.281 -21.332 12.764 1 40.49 ? OE2 GLU 301 B 1 HETATM 10 O OXT GLU . . . D 4 -18.748 -15.429 11.825 1 31.12 ? OXT GLU 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #