data_5I58
#
_model_server_result.job_id            DH4DbrMT2n3y0sFVDOJ-GQ 
_model_server_result.datetime_utc      '2024-11-22 10:59:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5I58 
#
_exptl.entry_id    5I58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5I58 
_cell.length_a            53.919 
_cell.length_b            86.425 
_cell.length_c            122.628 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 148 n n 
N H GLU sing 149 n n 
N H2 GLU sing 150 n n 
CA C GLU sing 151 n n 
CA CB GLU sing 152 n n 
CA HA GLU sing 153 n n 
C O GLU doub 154 n n 
C OXT GLU sing 155 n n 
CB CG GLU sing 156 n n 
CB HB2 GLU sing 157 n n 
CB HB3 GLU sing 158 n n 
CG CD GLU sing 159 n n 
CG HG2 GLU sing 160 n n 
CG HG3 GLU sing 161 n n 
CD OE1 GLU doub 162 n n 
CD OE2 GLU sing 163 n n 
OE2 HE2 GLU sing 164 n n 
OXT HXT GLU sing 165 n n 
#
_atom_sites.entry_id                     5I58 
_atom_sites.fract_transf_matrix[1][1]    0.018546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GLY A 1 1001 1001 GLY GLY . 
D 4 GLU B 1 301 301 GLU GLU . 
E 5 67R B 1 302 401 67R 67R . 
F 6 HOH A 1 1101 1101 HOH HOH . 
F 6 HOH A 2 1102 1102 HOH HOH . 
F 6 HOH A 3 1103 1103 HOH HOH . 
F 6 HOH A 4 1104 1104 HOH HOH . 
F 6 HOH A 5 1105 1105 HOH HOH . 
F 6 HOH A 6 1106 1106 HOH HOH . 
F 6 HOH A 7 1107 1107 HOH HOH . 
F 6 HOH A 8 1108 1108 HOH HOH . 
F 6 HOH A 9 1109 1109 HOH HOH . 
F 6 HOH A 10 1110 1110 HOH HOH . 
F 6 HOH A 11 1111 1111 HOH HOH . 
F 6 HOH A 12 1112 1112 HOH HOH . 
F 6 HOH A 13 1113 1113 HOH HOH . 
F 6 HOH A 14 1114 1114 HOH HOH . 
F 6 HOH A 15 1115 1115 HOH HOH . 
F 6 HOH A 16 1116 1116 HOH HOH . 
F 6 HOH A 17 1117 1117 HOH HOH . 
F 6 HOH A 18 1118 1118 HOH HOH . 
F 6 HOH A 19 1119 1119 HOH HOH . 
F 6 HOH A 20 1120 1120 HOH HOH . 
F 6 HOH A 21 1121 1121 HOH HOH . 
F 6 HOH A 22 1122 1122 HOH HOH . 
F 6 HOH A 23 1123 1123 HOH HOH . 
F 6 HOH A 24 1124 1124 HOH HOH . 
F 6 HOH A 25 1125 1125 HOH HOH . 
F 6 HOH A 26 1126 1126 HOH HOH . 
F 6 HOH A 27 1127 1127 HOH HOH . 
F 6 HOH A 28 1128 1128 HOH HOH . 
F 6 HOH A 29 1129 1129 HOH HOH . 
F 6 HOH A 30 1130 1130 HOH HOH . 
F 6 HOH A 31 1131 1131 HOH HOH . 
F 6 HOH A 32 1132 1132 HOH HOH . 
F 6 HOH A 33 1133 1133 HOH HOH . 
F 6 HOH A 34 1134 1134 HOH HOH . 
F 6 HOH A 35 1135 1135 HOH HOH . 
F 6 HOH A 36 1136 1136 HOH HOH . 
F 6 HOH A 37 1137 1137 HOH HOH . 
F 6 HOH A 38 1138 1138 HOH HOH . 
F 6 HOH A 39 1139 1139 HOH HOH . 
F 6 HOH A 40 1140 1140 HOH HOH . 
F 6 HOH A 41 1141 1141 HOH HOH . 
F 6 HOH A 42 1142 1142 HOH HOH . 
F 6 HOH A 43 1143 1143 HOH HOH . 
F 6 HOH A 44 1144 1144 HOH HOH . 
G 6 HOH B 1 501 501 HOH HOH . 
G 6 HOH B 2 502 502 HOH HOH . 
G 6 HOH B 3 503 503 HOH HOH . 
G 6 HOH B 4 504 504 HOH HOH . 
G 6 HOH B 5 505 505 HOH HOH . 
G 6 HOH B 6 506 506 HOH HOH . 
G 6 HOH B 7 507 507 HOH HOH . 
G 6 HOH B 8 508 508 HOH HOH . 
G 6 HOH B 9 509 509 HOH HOH . 
G 6 HOH B 10 510 510 HOH HOH . 
G 6 HOH B 11 511 511 HOH HOH . 
G 6 HOH B 12 512 512 HOH HOH . 
G 6 HOH B 13 513 513 HOH HOH . 
G 6 HOH B 14 514 514 HOH HOH . 
G 6 HOH B 15 515 515 HOH HOH . 
G 6 HOH B 16 516 516 HOH HOH . 
G 6 HOH B 17 517 517 HOH HOH . 
G 6 HOH B 18 518 518 HOH HOH . 
G 6 HOH B 19 519 519 HOH HOH . 
G 6 HOH B 20 520 520 HOH HOH . 
G 6 HOH B 21 521 521 HOH HOH . 
G 6 HOH B 22 522 522 HOH HOH . 
G 6 HOH B 23 523 523 HOH HOH . 
G 6 HOH B 24 524 524 HOH HOH . 
G 6 HOH B 25 525 525 HOH HOH . 
G 6 HOH B 26 526 526 HOH HOH . 
G 6 HOH B 27 527 527 HOH HOH . 
G 6 HOH B 28 528 528 HOH HOH . 
G 6 HOH B 29 529 529 HOH HOH . 
G 6 HOH B 30 530 530 HOH HOH . 
G 6 HOH B 31 531 531 HOH HOH . 
G 6 HOH B 32 532 532 HOH HOH . 
G 6 HOH B 33 533 533 HOH HOH . 
G 6 HOH B 34 534 534 HOH HOH . 
G 6 HOH B 35 535 535 HOH HOH . 
G 6 HOH B 36 536 536 HOH HOH . 
G 6 HOH B 37 537 537 HOH HOH . 
G 6 HOH B 38 538 538 HOH HOH . 
G 6 HOH B 39 539 539 HOH HOH . 
G 6 HOH B 40 540 540 HOH HOH . 
G 6 HOH B 41 541 541 HOH HOH . 
G 6 HOH B 42 542 542 HOH HOH . 
G 6 HOH B 43 543 543 HOH HOH . 
G 6 HOH B 44 544 544 HOH HOH . 
G 6 HOH B 45 545 545 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . D 4 -20.438 -17.022 13.219 1 20.11 ? N GLU 301 B 1 
HETATM 2 C CA GLU . . . D 4 -19.676 -17.623 12.13 1 28.27 ? CA GLU 301 B 1 
HETATM 3 C C GLU . . . D 4 -18.746 -16.608 11.474 1 23.68 ? C GLU 301 B 1 
HETATM 4 O O GLU . . . D 4 -17.973 -16.945 10.576 1 27.52 ? O GLU 301 B 1 
HETATM 5 C CB GLU . . . D 4 -20.618 -18.227 11.087 1 22.79 ? CB GLU 301 B 1 
HETATM 6 C CG GLU . . . D 4 -21.241 -19.542 11.519 1 27.72 ? CG GLU 301 B 1 
HETATM 7 C CD GLU . . . D 4 -20.204 -20.628 11.736 1 32.45 ? CD GLU 301 B 1 
HETATM 8 O OE1 GLU . . . D 4 -19.306 -20.772 10.88 1 27.2 ? OE1 GLU 301 B 1 
HETATM 9 O OE2 GLU . . . D 4 -20.281 -21.332 12.764 1 40.49 ? OE2 GLU 301 B 1 
HETATM 10 O OXT GLU . . . D 4 -18.748 -15.429 11.825 1 31.12 ? OXT GLU 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#