data_5I58 # _model_server_result.job_id '_Q5b3fyvRdswrVZiWcjZDA' _model_server_result.datetime_utc '2024-11-22 11:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 5I58 # _exptl.entry_id 5I58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.914 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-({[(3-chloro-4-fluorophenyl)sulfonyl]amino}methyl)-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I58 _cell.length_a 53.919 _cell.length_b 86.425 _cell.length_c 122.628 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C17 H15 Cl F N5 O3 S2' _chem_comp.formula_weight 455.914 _chem_comp.id 67R _chem_comp.mon_nstd_flag . _chem_comp.name 5-({[(3-chloro-4-fluorophenyl)sulfonyl]amino}methyl)-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 67R sing 1 n n CL C02 67R sing 2 n n C16 S23 67R sing 3 n y C16 N24 67R doub 4 n y S23 C14 67R sing 5 n y N24 C15 67R sing 6 n y C14 C15 67R doub 7 n y C14 C13 67R sing 8 n n C02 C03 67R doub 9 n y C02 C01 67R sing 10 n y C03 C04 67R sing 11 n y O27 S25 67R doub 12 n n C13 N22 67R sing 13 n n N22 C12 67R sing 14 n n N19 C09 67R doub 15 n y N19 C10 67R sing 16 n y C09 C08 67R sing 17 n y F29 C01 67R sing 18 n n C01 C06 67R doub 19 n y C04 S25 67R sing 20 n n C04 C05 67R doub 21 n y S25 O26 67R doub 22 n n S25 N18 67R sing 23 n n C12 C10 67R sing 24 n n C12 O21 67R doub 25 n n C10 C11 67R doub 26 n y C07 C08 67R sing 27 n n C07 N18 67R sing 28 n n C08 N20 67R doub 29 n y C06 C05 67R sing 30 n y C11 N20 67R sing 31 n y C03 H1 67R sing 32 n n C05 H2 67R sing 33 n n C06 H3 67R sing 34 n n C07 H4 67R sing 35 n n C07 H5 67R sing 36 n n C09 H6 67R sing 37 n n C11 H7 67R sing 38 n n C13 H8 67R sing 39 n n C13 H9 67R sing 40 n n C15 H10 67R sing 41 n n C17 H11 67R sing 42 n n C17 H12 67R sing 43 n n C17 H13 67R sing 44 n n N18 H14 67R sing 45 n n N22 H15 67R sing 46 n n # _atom_sites.entry_id 5I58 _atom_sites.fract_transf_matrix[1][1] 0.018546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLY A 1 1001 1001 GLY GLY . D 4 GLU B 1 301 301 GLU GLU . E 5 67R B 1 302 401 67R 67R . F 6 HOH A 1 1101 1101 HOH HOH . F 6 HOH A 2 1102 1102 HOH HOH . F 6 HOH A 3 1103 1103 HOH HOH . F 6 HOH A 4 1104 1104 HOH HOH . F 6 HOH A 5 1105 1105 HOH HOH . F 6 HOH A 6 1106 1106 HOH HOH . F 6 HOH A 7 1107 1107 HOH HOH . F 6 HOH A 8 1108 1108 HOH HOH . F 6 HOH A 9 1109 1109 HOH HOH . F 6 HOH A 10 1110 1110 HOH HOH . F 6 HOH A 11 1111 1111 HOH HOH . F 6 HOH A 12 1112 1112 HOH HOH . F 6 HOH A 13 1113 1113 HOH HOH . F 6 HOH A 14 1114 1114 HOH HOH . F 6 HOH A 15 1115 1115 HOH HOH . F 6 HOH A 16 1116 1116 HOH HOH . F 6 HOH A 17 1117 1117 HOH HOH . F 6 HOH A 18 1118 1118 HOH HOH . F 6 HOH A 19 1119 1119 HOH HOH . F 6 HOH A 20 1120 1120 HOH HOH . F 6 HOH A 21 1121 1121 HOH HOH . F 6 HOH A 22 1122 1122 HOH HOH . F 6 HOH A 23 1123 1123 HOH HOH . F 6 HOH A 24 1124 1124 HOH HOH . F 6 HOH A 25 1125 1125 HOH HOH . F 6 HOH A 26 1126 1126 HOH HOH . F 6 HOH A 27 1127 1127 HOH HOH . F 6 HOH A 28 1128 1128 HOH HOH . F 6 HOH A 29 1129 1129 HOH HOH . F 6 HOH A 30 1130 1130 HOH HOH . F 6 HOH A 31 1131 1131 HOH HOH . F 6 HOH A 32 1132 1132 HOH HOH . F 6 HOH A 33 1133 1133 HOH HOH . F 6 HOH A 34 1134 1134 HOH HOH . F 6 HOH A 35 1135 1135 HOH HOH . F 6 HOH A 36 1136 1136 HOH HOH . F 6 HOH A 37 1137 1137 HOH HOH . F 6 HOH A 38 1138 1138 HOH HOH . F 6 HOH A 39 1139 1139 HOH HOH . F 6 HOH A 40 1140 1140 HOH HOH . F 6 HOH A 41 1141 1141 HOH HOH . F 6 HOH A 42 1142 1142 HOH HOH . F 6 HOH A 43 1143 1143 HOH HOH . F 6 HOH A 44 1144 1144 HOH HOH . G 6 HOH B 1 501 501 HOH HOH . G 6 HOH B 2 502 502 HOH HOH . G 6 HOH B 3 503 503 HOH HOH . G 6 HOH B 4 504 504 HOH HOH . G 6 HOH B 5 505 505 HOH HOH . G 6 HOH B 6 506 506 HOH HOH . G 6 HOH B 7 507 507 HOH HOH . G 6 HOH B 8 508 508 HOH HOH . G 6 HOH B 9 509 509 HOH HOH . G 6 HOH B 10 510 510 HOH HOH . G 6 HOH B 11 511 511 HOH HOH . G 6 HOH B 12 512 512 HOH HOH . G 6 HOH B 13 513 513 HOH HOH . G 6 HOH B 14 514 514 HOH HOH . G 6 HOH B 15 515 515 HOH HOH . G 6 HOH B 16 516 516 HOH HOH . G 6 HOH B 17 517 517 HOH HOH . G 6 HOH B 18 518 518 HOH HOH . G 6 HOH B 19 519 519 HOH HOH . G 6 HOH B 20 520 520 HOH HOH . G 6 HOH B 21 521 521 HOH HOH . G 6 HOH B 22 522 522 HOH HOH . G 6 HOH B 23 523 523 HOH HOH . G 6 HOH B 24 524 524 HOH HOH . G 6 HOH B 25 525 525 HOH HOH . G 6 HOH B 26 526 526 HOH HOH . G 6 HOH B 27 527 527 HOH HOH . G 6 HOH B 28 528 528 HOH HOH . G 6 HOH B 29 529 529 HOH HOH . G 6 HOH B 30 530 530 HOH HOH . G 6 HOH B 31 531 531 HOH HOH . G 6 HOH B 32 532 532 HOH HOH . G 6 HOH B 33 533 533 HOH HOH . G 6 HOH B 34 534 534 HOH HOH . G 6 HOH B 35 535 535 HOH HOH . G 6 HOH B 36 536 536 HOH HOH . G 6 HOH B 37 537 537 HOH HOH . G 6 HOH B 38 538 538 HOH HOH . G 6 HOH B 39 539 539 HOH HOH . G 6 HOH B 40 540 540 HOH HOH . G 6 HOH B 41 541 541 HOH HOH . G 6 HOH B 42 542 542 HOH HOH . G 6 HOH B 43 543 543 HOH HOH . G 6 HOH B 44 544 544 HOH HOH . G 6 HOH B 45 545 545 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 67R . . . E 5 -17.995 -13.765 28.042 1 47.03 ? C01 67R 302 B 1 HETATM 2 C C02 67R . . . E 5 -17.761 -12.94 26.99 1 39.39 ? C02 67R 302 B 1 HETATM 3 C C03 67R . . . E 5 -16.776 -12.002 27.032 1 31.52 ? C03 67R 302 B 1 HETATM 4 C C04 67R . . . E 5 -16.049 -11.893 28.135 1 36.39 ? C04 67R 302 B 1 HETATM 5 C C05 67R . . . E 5 -16.304 -12.698 29.181 1 31.39 ? C05 67R 302 B 1 HETATM 6 C C06 67R . . . E 5 -17.279 -13.655 29.134 1 35.17 ? C06 67R 302 B 1 HETATM 7 C C07 67R . . . E 5 -16.323 -8.697 28.67 1 21.12 ? C07 67R 302 B 1 HETATM 8 C C08 67R . . . E 5 -17.695 -9.361 28.697 1 34.68 ? C08 67R 302 B 1 HETATM 9 C C09 67R . . . E 5 -18.454 -9.35 27.568 1 36.98 ? C09 67R 302 B 1 HETATM 10 C C10 67R . . . E 5 -20.089 -10.493 28.58 1 34.72 ? C10 67R 302 B 1 HETATM 11 C C11 67R . . . E 5 -19.344 -10.518 29.733 1 39.99 ? C11 67R 302 B 1 HETATM 12 C C12 67R . . . E 5 -21.485 -11.133 28.488 1 38 ? C12 67R 302 B 1 HETATM 13 C C13 67R . . . E 5 -23.681 -11.196 27.343 1 31 ? C13 67R 302 B 1 HETATM 14 C C14 67R . . . E 5 -23.586 -12.589 26.773 1 33.88 ? C14 67R 302 B 1 HETATM 15 C C15 67R . . . E 5 -22.453 -13.436 26.783 1 41.64 ? C15 67R 302 B 1 HETATM 16 C C16 67R . . . E 5 -23.857 -14.871 25.71 1 41.73 ? C16 67R 302 B 1 HETATM 17 C C17 67R . . . E 5 -24.267 -16.12 25.044 1 31.74 ? C17 67R 302 B 1 HETATM 18 N N18 67R . . . E 5 -15.313 -9.513 29.25 1 28.44 ? N18 67R 302 B 1 HETATM 19 N N19 67R . . . E 5 -19.605 -9.883 27.505 1 46.89 ? N19 67R 302 B 1 HETATM 20 N N20 67R . . . E 5 -18.201 -9.973 29.796 1 45.46 ? N20 67R 302 B 1 HETATM 21 O O21 67R . . . E 5 -21.801 -12.004 29.257 1 47.69 ? O21 67R 302 B 1 HETATM 22 N N22 67R . . . E 5 -22.436 -10.672 27.463 1 32.99 ? N22 67R 302 B 1 HETATM 23 S S23 67R . . . E 5 -24.764 -13.519 25.982 1 41.53 ? S23 67R 302 B 1 HETATM 24 N N24 67R . . . E 5 -22.621 -14.633 26.19 1 38.47 ? N24 67R 302 B 1 HETATM 25 S S25 67R . . . E 5 -14.774 -10.686 28.308 1 43.94 ? S25 67R 302 B 1 HETATM 26 O O26 67R . . . E 5 -13.623 -11.352 29.051 1 36.84 ? O26 67R 302 B 1 HETATM 27 O O27 67R . . . E 5 -14.287 -10.175 27.087 1 23.06 ? O27 67R 302 B 1 HETATM 28 CL CL 67R . . . E 5 -18.72 -13.152 25.619 1 39.35 ? CL 67R 302 B 1 HETATM 29 F F29 67R . . . E 5 -18.934 -14.653 27.954 1 38.94 ? F29 67R 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #