data_5I59 # _model_server_result.job_id IuwjipLRA_Nw5zRwEQZ2wg _model_server_result.datetime_utc '2024-11-22 13:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5I59 # _exptl.entry_id 5I59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I59 _cell.length_a 53.951 _cell.length_b 86.729 _cell.length_c 123.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 171 n n N H GLY sing 172 n n N H2 GLY sing 173 n n CA C GLY sing 174 n n CA HA2 GLY sing 175 n n CA HA3 GLY sing 176 n n C O GLY doub 177 n n C OXT GLY sing 178 n n OXT HXT GLY sing 179 n n # _atom_sites.entry_id 5I59 _atom_sites.fract_transf_matrix[1][1] 0.018535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLY A 1 1001 1001 GLY GLY . D 4 GLU B 1 301 301 GLU GLU . E 5 67Q B 1 302 401 67Q 67Q . F 6 HOH A 1 1101 1101 HOH HOH . F 6 HOH A 2 1102 1102 HOH HOH . F 6 HOH A 3 1103 1103 HOH HOH . F 6 HOH A 4 1104 1104 HOH HOH . F 6 HOH A 5 1105 1105 HOH HOH . F 6 HOH A 6 1106 1106 HOH HOH . F 6 HOH A 7 1107 1107 HOH HOH . F 6 HOH A 8 1108 1108 HOH HOH . F 6 HOH A 9 1109 1109 HOH HOH . F 6 HOH A 10 1110 1110 HOH HOH . F 6 HOH A 11 1111 1111 HOH HOH . F 6 HOH A 12 1112 1112 HOH HOH . F 6 HOH A 13 1113 1113 HOH HOH . F 6 HOH A 14 1114 1114 HOH HOH . F 6 HOH A 15 1115 1115 HOH HOH . F 6 HOH A 16 1116 1116 HOH HOH . F 6 HOH A 17 1117 1117 HOH HOH . F 6 HOH A 18 1118 1118 HOH HOH . F 6 HOH A 19 1119 1119 HOH HOH . F 6 HOH A 20 1120 1120 HOH HOH . F 6 HOH A 21 1121 1121 HOH HOH . F 6 HOH A 22 1122 1122 HOH HOH . F 6 HOH A 23 1123 1123 HOH HOH . F 6 HOH A 24 1124 1124 HOH HOH . F 6 HOH A 25 1125 1125 HOH HOH . F 6 HOH A 26 1126 1126 HOH HOH . F 6 HOH A 27 1127 1127 HOH HOH . F 6 HOH A 28 1128 1128 HOH HOH . F 6 HOH A 29 1129 1129 HOH HOH . F 6 HOH A 30 1130 1130 HOH HOH . F 6 HOH A 31 1131 1131 HOH HOH . F 6 HOH A 32 1132 1132 HOH HOH . F 6 HOH A 33 1133 1133 HOH HOH . F 6 HOH A 34 1134 1134 HOH HOH . F 6 HOH A 35 1135 1135 HOH HOH . F 6 HOH A 36 1136 1136 HOH HOH . F 6 HOH A 37 1137 1137 HOH HOH . F 6 HOH A 38 1138 1138 HOH HOH . F 6 HOH A 39 1139 1139 HOH HOH . F 6 HOH A 40 1140 1140 HOH HOH . F 6 HOH A 41 1141 1141 HOH HOH . F 6 HOH A 42 1142 1142 HOH HOH . F 6 HOH A 43 1143 1143 HOH HOH . F 6 HOH A 44 1144 1144 HOH HOH . F 6 HOH A 45 1145 1145 HOH HOH . F 6 HOH A 46 1146 1146 HOH HOH . F 6 HOH A 47 1147 1147 HOH HOH . F 6 HOH A 48 1148 1148 HOH HOH . F 6 HOH A 49 1149 1149 HOH HOH . F 6 HOH A 50 1150 1150 HOH HOH . F 6 HOH A 51 1151 1151 HOH HOH . F 6 HOH A 52 1152 1152 HOH HOH . F 6 HOH A 53 1153 1153 HOH HOH . F 6 HOH A 54 1154 1154 HOH HOH . F 6 HOH A 55 1155 1155 HOH HOH . F 6 HOH A 56 1156 1156 HOH HOH . F 6 HOH A 57 1157 1157 HOH HOH . F 6 HOH A 58 1158 1158 HOH HOH . F 6 HOH A 59 1159 1159 HOH HOH . F 6 HOH A 60 1160 1160 HOH HOH . F 6 HOH A 61 1161 1161 HOH HOH . F 6 HOH A 62 1162 1162 HOH HOH . F 6 HOH A 63 1163 1163 HOH HOH . G 6 HOH B 1 501 501 HOH HOH . G 6 HOH B 2 502 502 HOH HOH . G 6 HOH B 3 503 503 HOH HOH . G 6 HOH B 4 504 504 HOH HOH . G 6 HOH B 5 505 505 HOH HOH . G 6 HOH B 6 506 506 HOH HOH . G 6 HOH B 7 507 507 HOH HOH . G 6 HOH B 8 508 508 HOH HOH . G 6 HOH B 9 509 509 HOH HOH . G 6 HOH B 10 510 510 HOH HOH . G 6 HOH B 11 511 511 HOH HOH . G 6 HOH B 12 512 512 HOH HOH . G 6 HOH B 13 513 513 HOH HOH . G 6 HOH B 14 514 514 HOH HOH . G 6 HOH B 15 515 515 HOH HOH . G 6 HOH B 16 516 516 HOH HOH . G 6 HOH B 17 517 517 HOH HOH . G 6 HOH B 18 518 518 HOH HOH . G 6 HOH B 19 519 519 HOH HOH . G 6 HOH B 20 520 520 HOH HOH . G 6 HOH B 21 521 521 HOH HOH . G 6 HOH B 22 522 522 HOH HOH . G 6 HOH B 23 523 523 HOH HOH . G 6 HOH B 24 524 524 HOH HOH . G 6 HOH B 25 525 525 HOH HOH . G 6 HOH B 26 526 526 HOH HOH . G 6 HOH B 27 527 527 HOH HOH . G 6 HOH B 28 528 528 HOH HOH . G 6 HOH B 29 529 529 HOH HOH . G 6 HOH B 30 530 530 HOH HOH . G 6 HOH B 31 531 531 HOH HOH . G 6 HOH B 32 532 532 HOH HOH . G 6 HOH B 33 533 533 HOH HOH . G 6 HOH B 34 534 534 HOH HOH . G 6 HOH B 35 535 535 HOH HOH . G 6 HOH B 36 536 536 HOH HOH . G 6 HOH B 37 537 537 HOH HOH . G 6 HOH B 38 538 538 HOH HOH . G 6 HOH B 39 539 539 HOH HOH . G 6 HOH B 40 540 540 HOH HOH . G 6 HOH B 41 541 541 HOH HOH . G 6 HOH B 42 542 542 HOH HOH . G 6 HOH B 43 543 543 HOH HOH . G 6 HOH B 44 544 544 HOH HOH . G 6 HOH B 45 545 545 HOH HOH . G 6 HOH B 46 546 546 HOH HOH . G 6 HOH B 47 547 547 HOH HOH . G 6 HOH B 48 548 548 HOH HOH . G 6 HOH B 49 549 549 HOH HOH . G 6 HOH B 50 550 550 HOH HOH . G 6 HOH B 51 551 551 HOH HOH . G 6 HOH B 52 552 552 HOH HOH . G 6 HOH B 53 553 553 HOH HOH . G 6 HOH B 54 554 554 HOH HOH . G 6 HOH B 55 555 555 HOH HOH . G 6 HOH B 56 556 556 HOH HOH . G 6 HOH B 57 557 557 HOH HOH . G 6 HOH B 58 558 558 HOH HOH . G 6 HOH B 59 559 559 HOH HOH . G 6 HOH B 60 560 560 HOH HOH . G 6 HOH B 61 561 561 HOH HOH . G 6 HOH B 62 562 562 HOH HOH . G 6 HOH B 63 563 563 HOH HOH . G 6 HOH B 64 564 564 HOH HOH . G 6 HOH B 65 565 565 HOH HOH . G 6 HOH B 66 566 566 HOH HOH . G 6 HOH B 67 567 567 HOH HOH . G 6 HOH B 68 568 568 HOH HOH . G 6 HOH B 69 569 569 HOH HOH . G 6 HOH B 70 570 570 HOH HOH . G 6 HOH B 71 571 571 HOH HOH . G 6 HOH B 72 572 572 HOH HOH . G 6 HOH B 73 573 573 HOH HOH . G 6 HOH B 74 574 574 HOH HOH . G 6 HOH B 75 575 575 HOH HOH . G 6 HOH B 76 576 576 HOH HOH . G 6 HOH B 77 577 577 HOH HOH . G 6 HOH B 78 578 578 HOH HOH . G 6 HOH B 79 579 579 HOH HOH . G 6 HOH B 80 580 580 HOH HOH . G 6 HOH B 81 581 581 HOH HOH . G 6 HOH B 82 582 582 HOH HOH . G 6 HOH B 83 583 583 HOH HOH . G 6 HOH B 84 584 584 HOH HOH . G 6 HOH B 85 585 585 HOH HOH . G 6 HOH B 86 586 586 HOH HOH . G 6 HOH B 87 587 587 HOH HOH . G 6 HOH B 88 588 588 HOH HOH . G 6 HOH B 89 589 589 HOH HOH . G 6 HOH B 90 590 590 HOH HOH . G 6 HOH B 91 591 591 HOH HOH . G 6 HOH B 92 592 592 HOH HOH . G 6 HOH B 93 593 593 HOH HOH . G 6 HOH B 94 594 594 HOH HOH . G 6 HOH B 95 595 595 HOH HOH . G 6 HOH B 96 596 596 HOH HOH . G 6 HOH B 97 597 597 HOH HOH . G 6 HOH B 98 598 598 HOH HOH . G 6 HOH B 99 599 599 HOH HOH . G 6 HOH B 100 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . C 3 10.093 98.947 38.48 1 24.02 ? N GLY 1001 A 1 HETATM 2 C CA GLY . . . C 3 9.933 98.124 39.669 1 24.14 ? CA GLY 1001 A 1 HETATM 3 C C GLY . . . C 3 9.543 96.699 39.32 1 26.34 ? C GLY 1001 A 1 HETATM 4 O O GLY . . . C 3 9.252 96.376 38.161 1 24.3 ? O GLY 1001 A 1 HETATM 5 O OXT GLY . . . C 3 9.513 95.826 40.192 1 25.14 ? OXT GLY 1001 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #