data_5I5B # _model_server_result.job_id '_m00HHw_SXSfDaeBJ5R5Aw' _model_server_result.datetime_utc '2024-11-22 19:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":102}' # _entry.id 5I5B # _exptl.entry_id 5I5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 113.82 _cell.angle_beta 90.42 _cell.angle_gamma 98.98 _cell.entry_id 5I5B _cell.length_a 21.457 _cell.length_b 24.935 _cell.length_c 29.935 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 17 A CYS 17 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG DCY 3 B DCY 3 1_555 B SG DCY 35 B DCY 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf5 B SG DCY 12 B DCY 12 1_555 B SG DCY 28 B DCY 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG DCY 17 B DCY 17 1_555 B SG DCY 32 B DCY 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A C CYS 12 A CYS 12 1_555 A N ALO 13 A ALO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C ALO 13 A ALO 13 1_555 A N ALA 14 A ALA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 B C DAR 1 B DAR 1 1_555 B N DSN 2 B DSN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 B C DSN 2 B DSN 2 1_555 B N DCY 3 B DCY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale5 B C DCY 3 B DCY 3 1_555 B N DIL 4 B DIL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale6 B C DIL 4 B DIL 4 1_555 B N DAS 5 B DAS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C DAS 5 B DAS 5 1_555 B N DTH 6 B DTH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale8 B C DTH 6 B DTH 6 1_555 B N DIL 7 B DIL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale9 B C DIL 7 B DIL 7 1_555 B N DPR 8 B DPR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C DPR 8 B DPR 8 1_555 B N DLY 9 B DLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 B C DLY 9 B DLY 9 1_555 B N DSN 10 B DSN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 B C DSN 10 B DSN 10 1_555 B N DAR 11 B DAR 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale13 B C DAR 11 B DAR 11 1_555 B N DCY 12 B DCY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 B C DCY 12 B DCY 12 1_555 B N DTH 13 B DTH 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale15 B C DTH 13 B DTH 13 1_555 B N DAL 14 B DAL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale16 B C DAL 14 B DAL 14 1_555 B N DPN 15 B DPN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 B C DPN 15 B DPN 15 1_555 B N DGN 16 B DGN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale18 B C DGN 16 B DGN 16 1_555 B N DCY 17 B DCY 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale19 B C DCY 17 B DCY 17 1_555 B N DLY 18 B DLY 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale20 B C DLY 18 B DLY 18 1_555 B N DHI 19 B DHI 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale21 B C DHI 19 B DHI 19 1_555 B N DSN 20 B DSN 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale22 B C DSN 20 B DSN 20 1_555 B N MED 21 B MED 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale23 B C MED 21 B MED 21 1_555 B N DLY 22 B DLY 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale24 B C DLY 22 B DLY 22 1_555 B N DTY 23 B DTY 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale25 B C DTY 23 B DTY 23 1_555 B N DAR 24 B DAR 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale26 B C DAR 24 B DAR 24 1_555 B N DLE 25 B DLE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale27 B C DLE 25 B DLE 25 1_555 B N DSN 26 B DSN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale28 B C DSN 26 B DSN 26 1_555 B N DPN 27 B DPN 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale29 B C DPN 27 B DPN 27 1_555 B N DCY 28 B DCY 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale30 B C DCY 28 B DCY 28 1_555 B N DAR 29 B DAR 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale31 B C DAR 29 B DAR 29 1_555 B N DLY 30 B DLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale32 B C DLY 30 B DLY 30 1_555 B N DTH 31 B DTH 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale33 B C DTH 31 B DTH 31 1_555 B N DCY 32 B DCY 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale34 B C DCY 32 B DCY 32 1_555 B N GLY 33 B GLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale35 B C GLY 33 B GLY 33 1_555 B N DTH 34 B DTH 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale36 B C DTH 34 B DTH 34 1_555 B N DCY 35 B DCY 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OH TYR 23 A TYR 23 1_555 F LI LI . A LI 104 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc2 A OH TYR 23 A TYR 23 1_555 F LI LI . A LI 104 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 F LI LI . A LI 104 1_555 L O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 375 n n C1 C2 GOL sing 376 n n C1 H11 GOL sing 377 n n C1 H12 GOL sing 378 n n O1 HO1 GOL sing 379 n n C2 O2 GOL sing 380 n n C2 C3 GOL sing 381 n n C2 H2 GOL sing 382 n n O2 HO2 GOL sing 383 n n C3 O3 GOL sing 384 n n C3 H31 GOL sing 385 n n C3 H32 GOL sing 386 n n O3 HO3 GOL sing 387 n n # _atom_sites.entry_id 5I5B _atom_sites.fract_transf_matrix[1][1] 0.046605 _atom_sites.fract_transf_matrix[1][2] 0.007361 _atom_sites.fract_transf_matrix[1][3] 0.003687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.040601 _atom_sites.fract_transf_matrix[2][3] 0.018252 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 101 2 SO4 SO4 . D 3 SO4 A 1 102 3 SO4 SO4 . E 3 SO4 A 1 103 4 SO4 SO4 . F 4 LI A 1 104 2 LI LI . G 4 LI A 1 105 3 LI LI . H 4 LI A 1 106 4 LI LI . I 3 SO4 B 1 101 1 SO4 SO4 . J 5 GOL B 1 102 1 GOL GOL . K 4 LI B 1 103 1 LI LI . L 6 HOH A 1 201 108 HOH HOH . L 6 HOH A 2 202 62 HOH HOH . L 6 HOH A 3 203 63 HOH HOH . L 6 HOH A 4 204 109 HOH HOH . L 6 HOH A 5 205 44 HOH HOH . L 6 HOH A 6 206 31 HOH HOH . L 6 HOH A 7 207 15 HOH HOH . L 6 HOH A 8 208 39 HOH HOH . L 6 HOH A 9 209 6 HOH HOH . L 6 HOH A 10 210 28 HOH HOH . L 6 HOH A 11 211 41 HOH HOH . L 6 HOH A 12 212 56 HOH HOH . L 6 HOH A 13 213 27 HOH HOH . L 6 HOH A 14 214 8 HOH HOH . L 6 HOH A 15 215 1 HOH HOH . L 6 HOH A 16 216 3 HOH HOH . L 6 HOH A 17 217 12 HOH HOH . L 6 HOH A 18 218 14 HOH HOH . L 6 HOH A 19 219 53 HOH HOH . L 6 HOH A 20 220 94 HOH HOH . L 6 HOH A 21 221 75 HOH HOH . L 6 HOH A 22 222 67 HOH HOH . L 6 HOH A 23 223 127 HOH HOH . L 6 HOH A 24 224 43 HOH HOH . L 6 HOH A 25 225 19 HOH HOH . L 6 HOH A 26 226 89 HOH HOH . L 6 HOH A 27 227 50 HOH HOH . L 6 HOH A 28 228 18 HOH HOH . L 6 HOH A 29 229 98 HOH HOH . L 6 HOH A 30 230 86 HOH HOH . L 6 HOH A 31 231 122 HOH HOH . L 6 HOH A 32 232 52 HOH HOH . L 6 HOH A 33 233 102 HOH HOH . L 6 HOH A 34 234 57 HOH HOH . L 6 HOH A 35 235 5 HOH HOH . L 6 HOH A 36 236 65 HOH HOH . L 6 HOH A 37 237 84 HOH HOH . L 6 HOH A 38 238 126 HOH HOH . L 6 HOH A 39 239 118 HOH HOH . L 6 HOH A 40 240 81 HOH HOH . L 6 HOH A 41 241 113 HOH HOH . L 6 HOH A 42 242 124 HOH HOH . L 6 HOH A 43 243 123 HOH HOH . L 6 HOH A 44 244 35 HOH HOH . L 6 HOH A 45 245 32 HOH HOH . L 6 HOH A 46 246 38 HOH HOH . L 6 HOH A 47 247 85 HOH HOH . L 6 HOH A 48 248 128 HOH HOH . M 6 HOH B 1 201 106 HOH HOH . M 6 HOH B 2 202 105 HOH HOH . M 6 HOH B 3 203 59 HOH HOH . M 6 HOH B 4 204 26 HOH HOH . M 6 HOH B 5 205 99 HOH HOH . M 6 HOH B 6 206 87 HOH HOH . M 6 HOH B 7 207 10 HOH HOH . M 6 HOH B 8 208 30 HOH HOH . M 6 HOH B 9 209 117 HOH HOH . M 6 HOH B 10 210 80 HOH HOH . M 6 HOH B 11 211 4 HOH HOH . M 6 HOH B 12 212 82 HOH HOH . M 6 HOH B 13 213 16 HOH HOH . M 6 HOH B 14 214 111 HOH HOH . M 6 HOH B 15 215 64 HOH HOH . M 6 HOH B 16 216 11 HOH HOH . M 6 HOH B 17 217 23 HOH HOH . M 6 HOH B 18 218 20 HOH HOH . M 6 HOH B 19 219 2 HOH HOH . M 6 HOH B 20 220 45 HOH HOH . M 6 HOH B 21 221 13 HOH HOH . M 6 HOH B 22 222 54 HOH HOH . M 6 HOH B 23 223 48 HOH HOH . M 6 HOH B 24 224 96 HOH HOH . M 6 HOH B 25 225 107 HOH HOH . M 6 HOH B 26 226 17 HOH HOH . M 6 HOH B 27 227 103 HOH HOH . M 6 HOH B 28 228 78 HOH HOH . M 6 HOH B 29 229 7 HOH HOH . M 6 HOH B 30 230 46 HOH HOH . M 6 HOH B 31 231 88 HOH HOH . M 6 HOH B 32 232 116 HOH HOH . M 6 HOH B 33 233 77 HOH HOH . M 6 HOH B 34 234 115 HOH HOH . M 6 HOH B 35 235 55 HOH HOH . M 6 HOH B 36 236 93 HOH HOH . M 6 HOH B 37 237 104 HOH HOH . M 6 HOH B 38 238 114 HOH HOH . M 6 HOH B 39 239 9 HOH HOH . M 6 HOH B 40 240 91 HOH HOH . M 6 HOH B 41 241 74 HOH HOH . M 6 HOH B 42 242 33 HOH HOH . M 6 HOH B 43 243 100 HOH HOH . M 6 HOH B 44 244 119 HOH HOH . M 6 HOH B 45 245 125 HOH HOH . M 6 HOH B 46 246 129 HOH HOH . M 6 HOH B 47 247 69 HOH HOH . M 6 HOH B 48 248 110 HOH HOH . M 6 HOH B 49 249 70 HOH HOH . M 6 HOH B 50 250 66 HOH HOH . M 6 HOH B 51 251 76 HOH HOH . M 6 HOH B 52 252 120 HOH HOH . M 6 HOH B 53 253 121 HOH HOH . M 6 HOH B 54 254 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 5 0.131 2.792 13.562 1 10.8 ? C1 GOL 102 B 1 HETATM 2 O O1 GOL . . . J 5 1.259 3.253 14.35 1 13.67 ? O1 GOL 102 B 1 HETATM 3 C C2 GOL . . . J 5 0.057 3.371 12.154 1 10.44 ? C2 GOL 102 B 1 HETATM 4 O O2 GOL . . . J 5 -0.948 2.772 11.232 1 11.76 ? O2 GOL 102 B 1 HETATM 5 C C3 GOL . . . J 5 -0.047 4.887 12.266 1 9.65 ? C3 GOL 102 B 1 HETATM 6 O O3 GOL . . . J 5 -1.298 5.206 12.835 1 13.84 ? O3 GOL 102 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #