data_5I5L # _model_server_result.job_id '_hksxnsd6_y1uJhJELpixA' _model_server_result.datetime_utc '2025-02-28 15:12:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5I5L # _exptl.entry_id 5I5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I5L _cell.length_a 173.019 _cell.length_b 173.019 _cell.length_c 78.823 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -78.823 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 11 A CYS 20 1_555 B CBC BLA . A BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc1 A OD1 ASP 158 A ASP 167 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A O PHE 159 A PHE 168 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 C CA CA . A CA 602 1_555 F O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 C CA CA . A CA 602 1_555 F O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc5 C CA CA . A CA 602 1_555 F O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 C CA CA . A CA 602 1_555 F O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc7 C CA CA . A CA 602 1_555 F O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 5I5L _atom_sites.fract_transf_matrix[1][1] 0.00578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BLA A 1 601 601 BLA BLA . C 3 CA A 1 602 602 CA CA . D 4 TAM A 1 603 603 TAM TAM . E 5 GOL A 1 604 604 GOL GOL . F 6 HOH A 1 701 723 HOH HOH . F 6 HOH A 2 702 711 HOH HOH . F 6 HOH A 3 703 721 HOH HOH . F 6 HOH A 4 704 710 HOH HOH . F 6 HOH A 5 705 709 HOH HOH . F 6 HOH A 6 706 707 HOH HOH . F 6 HOH A 7 707 705 HOH HOH . F 6 HOH A 8 708 720 HOH HOH . F 6 HOH A 9 709 708 HOH HOH . F 6 HOH A 10 710 713 HOH HOH . F 6 HOH A 11 711 714 HOH HOH . F 6 HOH A 12 712 715 HOH HOH . F 6 HOH A 13 713 719 HOH HOH . F 6 HOH A 14 714 703 HOH HOH . F 6 HOH A 15 715 716 HOH HOH . F 6 HOH A 16 716 717 HOH HOH . F 6 HOH A 17 717 706 HOH HOH . F 6 HOH A 18 718 722 HOH HOH . F 6 HOH A 19 719 701 HOH HOH . F 6 HOH A 20 720 718 HOH HOH . F 6 HOH A 21 721 704 HOH HOH . F 6 HOH A 22 722 712 HOH HOH . F 6 HOH A 23 723 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . B 2 -20.695 -27.865 -23.517 1 62.58 ? CHA BLA 601 A 1 HETATM 2 N NA BLA . . . B 2 -21.121 -27.055 -21.236 1 60.55 ? NA BLA 601 A 1 HETATM 3 C C1A BLA . . . B 2 -21.135 -27.976 -22.22 1 61.42 ? C1A BLA 601 A 1 HETATM 4 C C2A BLA . . . B 2 -21.639 -29.145 -21.745 1 60.94 ? C2A BLA 601 A 1 HETATM 5 C C3A BLA . . . B 2 -21.973 -28.957 -20.466 1 60.38 ? C3A BLA 601 A 1 HETATM 6 C C4A BLA . . . B 2 -21.629 -27.688 -20.157 1 60.28 ? C4A BLA 601 A 1 HETATM 7 C CMA BLA . . . B 2 -22.611 -30.037 -19.581 1 61.27 ? CMA BLA 601 A 1 HETATM 8 C CAA BLA . . . B 2 -21.84 -30.48 -22.505 1 62.97 ? CAA BLA 601 A 1 HETATM 9 C CBA BLA . . . B 2 -20.58 -31.37 -22.558 1 63.36 ? CBA BLA 601 A 1 HETATM 10 C CGA BLA . . . B 2 -20.293 -32.1 -21.228 1 65.3 ? CGA BLA 601 A 1 HETATM 11 O O1A BLA . . . B 2 -20.933 -33.156 -20.973 1 67.01 ? O1A BLA 601 A 1 HETATM 12 O O2A BLA . . . B 2 -19.399 -31.607 -20.499 1 66.4 ? O2A BLA 601 A 1 HETATM 13 C CHB BLA . . . B 2 -21.801 -26.997 -18.999 1 59.37 ? CHB BLA 601 A 1 HETATM 14 N NB BLA . . . B 2 -21.007 -28.477 -17.243 1 60.78 ? NB BLA 601 A 1 HETATM 15 C C1B BLA . . . B 2 -21.752 -27.469 -17.729 1 59.66 ? C1B BLA 601 A 1 HETATM 16 C C2B BLA . . . B 2 -22.459 -26.881 -16.736 1 59.51 ? C2B BLA 601 A 1 HETATM 17 C C3B BLA . . . B 2 -22.199 -27.543 -15.609 1 61.18 ? C3B BLA 601 A 1 HETATM 18 C C4B BLA . . . B 2 -21.32 -28.493 -15.944 1 61.65 ? C4B BLA 601 A 1 HETATM 19 C CMB BLA . . . B 2 -23.419 -25.685 -16.825 1 58.61 ? CMB BLA 601 A 1 HETATM 20 O OB BLA . . . B 2 -20.85 -29.291 -15.132 1 63.39 ? OB BLA 601 A 1 HETATM 21 C CAB BLA . . . B 2 -22.701 -27.25 -14.393 1 61.67 ? CAB BLA 601 A 1 HETATM 22 C CBB BLA . . . B 2 -23.134 -28.177 -13.534 1 63.22 ? CBB BLA 601 A 1 HETATM 23 N NC BLA . . . B 2 -19.149 -22.792 -22.502 1 73.75 ? NC BLA 601 A 1 HETATM 24 C C1C BLA . . . B 2 -18.78 -21.638 -21.929 1 74.4 ? C1C BLA 601 A 1 HETATM 25 C C2C BLA . . . B 2 -18.437 -20.717 -22.809 1 74.87 ? C2C BLA 601 A 1 HETATM 26 C C3C BLA . . . B 2 -18.584 -21.273 -24.009 1 75.55 ? C3C BLA 601 A 1 HETATM 27 C C4C BLA . . . B 2 -19.009 -22.55 -23.815 1 72.73 ? C4C BLA 601 A 1 HETATM 28 C CMC BLA . . . B 2 -17.961 -19.288 -22.478 1 75.18 ? CMC BLA 601 A 1 HETATM 29 O OC BLA . . . B 2 -18.743 -21.422 -20.715 1 75.54 ? OC BLA 601 A 1 HETATM 30 C CAC BLA . . . B 2 -18.257 -20.515 -25.317 1 80.05 ? CAC BLA 601 A 1 HETATM 31 C CBC BLA . . . B 2 -19.255 -19.389 -25.572 1 86 ? CBC BLA 601 A 1 HETATM 32 C CHD BLA . . . B 2 -19.262 -23.404 -24.851 1 69.36 ? CHD BLA 601 A 1 HETATM 33 N ND BLA . . . B 2 -20.003 -25.502 -23.736 1 63.45 ? ND BLA 601 A 1 HETATM 34 C C1D BLA . . . B 2 -19.611 -24.732 -24.782 1 65.3 ? C1D BLA 601 A 1 HETATM 35 C C2D BLA . . . B 2 -19.676 -25.508 -25.877 1 63.34 ? C2D BLA 601 A 1 HETATM 36 C C3D BLA . . . B 2 -20.087 -26.723 -25.531 1 62.37 ? C3D BLA 601 A 1 HETATM 37 C C4D BLA . . . B 2 -20.302 -26.739 -24.198 1 62.37 ? C4D BLA 601 A 1 HETATM 38 C CMD BLA . . . B 2 -19.333 -25.075 -27.312 1 63.4 ? CMD BLA 601 A 1 HETATM 39 C CAD BLA . . . B 2 -20.226 -27.735 -26.403 1 62.56 ? CAD BLA 601 A 1 HETATM 40 C CBD BLA . . . B 2 -19.089 -28.781 -26.546 1 62.24 ? CBD BLA 601 A 1 HETATM 41 C CGD BLA . . . B 2 -19.314 -29.751 -27.718 1 63.71 ? CGD BLA 601 A 1 HETATM 42 O O1D BLA . . . B 2 -20.294 -30.516 -27.645 1 64.72 ? O1D BLA 601 A 1 HETATM 43 O O2D BLA . . . B 2 -18.485 -29.741 -28.653 1 63.48 ? O2D BLA 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #