data_5I5Q # _model_server_result.job_id 8DwJTqreFHmHEgkIcggYHg _model_server_result.datetime_utc '2024-11-16 06:38:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5I5Q # _exptl.entry_id 5I5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.04 _cell.angle_beta 71.17 _cell.angle_gamma 68.35 _cell.entry_id 5I5Q _cell.length_a 27.346 _cell.length_b 32.134 _cell.length_c 34.296 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5I5Q _atom_sites.fract_transf_matrix[1][1] 0.036568 _atom_sites.fract_transf_matrix[1][2] -0.014513 _atom_sites.fract_transf_matrix[1][3] -0.01394 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033481 _atom_sites.fract_transf_matrix[2][3] 0.003247 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 204 DMS DMS . C 3 NO3 A 1 202 210 NO3 NO3 . D 4 PT A 1 203 3 PT PT . E 4 PT A 1 204 1 PT PT . F 4 PT A 1 205 4 PT PT . G 3 NO3 A 1 206 1 NO3 NO3 . H 3 NO3 A 1 207 2 NO3 NO3 . I 5 HOH A 1 301 302 HOH HOH . I 5 HOH A 2 302 307 HOH HOH . I 5 HOH A 3 303 313 HOH HOH . I 5 HOH A 4 304 320 HOH HOH . I 5 HOH A 5 305 314 HOH HOH . I 5 HOH A 6 306 336 HOH HOH . I 5 HOH A 7 307 319 HOH HOH . I 5 HOH A 8 308 312 HOH HOH . I 5 HOH A 9 309 310 HOH HOH . I 5 HOH A 10 310 332 HOH HOH . I 5 HOH A 11 311 339 HOH HOH . I 5 HOH A 12 312 333 HOH HOH . I 5 HOH A 13 313 324 HOH HOH . I 5 HOH A 14 314 315 HOH HOH . I 5 HOH A 15 315 305 HOH HOH . I 5 HOH A 16 316 301 HOH HOH . I 5 HOH A 17 317 340 HOH HOH . I 5 HOH A 18 318 317 HOH HOH . I 5 HOH A 19 319 325 HOH HOH . I 5 HOH A 20 320 306 HOH HOH . I 5 HOH A 21 321 303 HOH HOH . I 5 HOH A 22 322 322 HOH HOH . I 5 HOH A 23 323 304 HOH HOH . I 5 HOH A 24 324 335 HOH HOH . I 5 HOH A 25 325 318 HOH HOH . I 5 HOH A 26 326 337 HOH HOH . I 5 HOH A 27 327 316 HOH HOH . I 5 HOH A 28 328 321 HOH HOH . I 5 HOH A 29 329 334 HOH HOH . I 5 HOH A 30 330 338 HOH HOH . I 5 HOH A 31 331 311 HOH HOH . I 5 HOH A 32 332 331 HOH HOH . I 5 HOH A 33 333 330 HOH HOH . I 5 HOH A 34 334 309 HOH HOH . I 5 HOH A 35 335 326 HOH HOH . I 5 HOH A 36 336 327 HOH HOH . I 5 HOH A 37 337 329 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 0.343 -14.067 -30.155 1 20.68 ? S DMS 201 A 1 HETATM 2 O O DMS . . . B 2 0.458 -12.98 -31.11 1 15.92 ? O DMS 201 A 1 HETATM 3 C C1 DMS . . . B 2 -0.251 -15.513 -30.894 1 19.21 ? C1 DMS 201 A 1 HETATM 4 C C2 DMS . . . B 2 1.834 -14.81 -29.733 1 20.81 ? C2 DMS 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #