data_5I6C
#
_model_server_result.job_id            JDBf1odFxP6rD5SCysDeOQ 
_model_server_result.datetime_utc      '2025-02-27 13:39:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5i6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1001}' 
#
_entry.id    5I6C 
#
_exptl.entry_id    5I6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.111 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            XANTHINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.11 
_cell.angle_gamma         90 
_cell.entry_id            5I6C 
_cell.length_a            75.09 
_cell.length_b            173.83 
_cell.length_c            82.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5I6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 174 A CYS 174 1_555 A SG CYS 185 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 174 B CYS 174 1_555 B SG CYS 185 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C5 H4 N4 O2' 
_chem_comp.formula_weight    152.111 
_chem_comp.id                XAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              XANTHINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C4 XAN sing 456 n y 
N9 C8 XAN sing 457 n y 
N9 HN9 XAN sing 458 n n 
C4 N3 XAN sing 459 n y 
C4 C5 XAN doub 460 n y 
N3 C2 XAN sing 461 n y 
N3 HN3 XAN sing 462 n n 
C2 O2 XAN doub 463 n n 
C2 N1 XAN sing 464 n y 
N1 C6 XAN sing 465 n y 
N1 HN1 XAN sing 466 n n 
C6 O6 XAN doub 467 n n 
C6 C5 XAN sing 468 n y 
C5 N7 XAN sing 469 n y 
N7 C8 XAN doub 470 n y 
C8 H8 XAN sing 471 n n 
#
_atom_sites.entry_id                     5I6C 
_atom_sites.fract_transf_matrix[1][1]    0.013317 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005141 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XAN A 1 1001 1001 XAN XAN . 
D 3 LMT A 1 1002 1002 LMT LMT . 
E 3 LMT A 1 1003 1003 LMT LMT . 
F 2 XAN B 1 1001 1001 XAN XAN . 
G 3 LMT B 1 1002 1002 LMT LMT . 
H 3 LMT B 1 1003 1003 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N9 XAN . . . F 2 -38.856 -44.741 9.867 1 162.59 ? N9 XAN 1001 B 1 
HETATM 2 C C4 XAN . . . F 2 -39.506 -45.381 8.856 1 161.19 ? C4 XAN 1001 B 1 
HETATM 3 N N3 XAN . . . F 2 -39.348 -45.355 7.5 1 160.22 ? N3 XAN 1001 B 1 
HETATM 4 C C2 XAN . . . F 2 -40.149 -46.111 6.696 1 160.01 ? C2 XAN 1001 B 1 
HETATM 5 O O2 XAN . . . F 2 -40.002 -46.082 5.489 1 159.08 ? O2 XAN 1001 B 1 
HETATM 6 N N1 XAN . . . F 2 -41.114 -46.9 7.257 1 159.98 ? N1 XAN 1001 B 1 
HETATM 7 C C6 XAN . . . F 2 -41.271 -46.927 8.592 1 160.85 ? C6 XAN 1001 B 1 
HETATM 8 O O6 XAN . . . F 2 -42.125 -47.623 9.092 1 161.75 ? O6 XAN 1001 B 1 
HETATM 9 C C5 XAN . . . F 2 -40.459 -46.16 9.405 1 158.78 ? C5 XAN 1001 B 1 
HETATM 10 N N7 XAN . . . F 2 -40.405 -46.007 10.753 1 159.7 ? N7 XAN 1001 B 1 
HETATM 11 C C8 XAN . . . F 2 -39.418 -45.13 11.035 1 161.43 ? C8 XAN 1001 B 1 
#
_model_server_stats.io_time_ms              108 
_model_server_stats.parse_time_ms           142 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#