data_5I6E # _model_server_result.job_id L-5eQxbpr4Jw1X219uCNLA _model_server_result.datetime_utc '2025-02-05 12:54:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5I6E # _exptl.entry_id 5I6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I6E _cell.length_a 110.86 _cell.length_b 110.86 _cell.length_c 131.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 390 A VAL 1156 1_555 A N SEP 391 A SEP 1157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C SEP 391 A SEP 1157 1_555 A N VAL 392 A VAL 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 5I6E _atom_sites.fract_transf_matrix[1][1] 0.00902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 1501 1 MLI MLI . C 3 HOH A 1 1601 58 HOH HOH . C 3 HOH A 2 1602 31 HOH HOH . C 3 HOH A 3 1603 19 HOH HOH . C 3 HOH A 4 1604 1 HOH HOH . C 3 HOH A 5 1605 23 HOH HOH . C 3 HOH A 6 1606 51 HOH HOH . C 3 HOH A 7 1607 65 HOH HOH . C 3 HOH A 8 1608 5 HOH HOH . C 3 HOH A 9 1609 73 HOH HOH . C 3 HOH A 10 1610 50 HOH HOH . C 3 HOH A 11 1611 10 HOH HOH . C 3 HOH A 12 1612 38 HOH HOH . C 3 HOH A 13 1613 2 HOH HOH . C 3 HOH A 14 1614 24 HOH HOH . C 3 HOH A 15 1615 12 HOH HOH . C 3 HOH A 16 1616 4 HOH HOH . C 3 HOH A 17 1617 3 HOH HOH . C 3 HOH A 18 1618 25 HOH HOH . C 3 HOH A 19 1619 29 HOH HOH . C 3 HOH A 20 1620 42 HOH HOH . C 3 HOH A 21 1621 61 HOH HOH . C 3 HOH A 22 1622 27 HOH HOH . C 3 HOH A 23 1623 64 HOH HOH . C 3 HOH A 24 1624 37 HOH HOH . C 3 HOH A 25 1625 18 HOH HOH . C 3 HOH A 26 1626 28 HOH HOH . C 3 HOH A 27 1627 44 HOH HOH . C 3 HOH A 28 1628 46 HOH HOH . C 3 HOH A 29 1629 34 HOH HOH . C 3 HOH A 30 1630 67 HOH HOH . C 3 HOH A 31 1631 59 HOH HOH . C 3 HOH A 32 1632 48 HOH HOH . C 3 HOH A 33 1633 22 HOH HOH . C 3 HOH A 34 1634 33 HOH HOH . C 3 HOH A 35 1635 40 HOH HOH . C 3 HOH A 36 1636 41 HOH HOH . C 3 HOH A 37 1637 30 HOH HOH . C 3 HOH A 38 1638 63 HOH HOH . C 3 HOH A 39 1639 35 HOH HOH . C 3 HOH A 40 1640 26 HOH HOH . C 3 HOH A 41 1641 52 HOH HOH . C 3 HOH A 42 1642 15 HOH HOH . C 3 HOH A 43 1643 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . B 2 14.894 26.077 21.581 1 90.63 ? C1 MLI 1501 A 1 HETATM 2 C C2 MLI . . . B 2 16.291 26.451 21.102 1 87.62 ? C2 MLI 1501 A 1 HETATM 3 C C3 MLI . . . B 2 14.92 25.113 22.761 1 92.66 ? C3 MLI 1501 A 1 HETATM 4 O O6 MLI . . . B 2 16.746 25.848 20.111 1 86.25 ? O6 MLI 1501 A 1 HETATM 5 O O7 MLI . . . B 2 16.913 27.337 21.722 1 86.41 ? O7 MLI 1501 A 1 HETATM 6 O O8 MLI . . . B 2 15.295 23.936 22.553 1 93.44 ? O8 MLI 1501 A 1 HETATM 7 O O9 MLI . . . B 2 14.559 25.55 23.883 1 92.53 ? O9 MLI 1501 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #