data_5I6N # _model_server_result.job_id okq3_KaYvoJ-kcGIGrJQKA _model_server_result.datetime_utc '2024-12-26 20:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 5I6N # _exptl.entry_id 5I6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I6N _cell.length_a 95.192 _cell.length_b 95.192 _cell.length_c 95.192 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 88 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A NE2 HIS 93 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A NE2 HIS 128 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 A SG CYS 129 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc5 A ND1 HIS 138 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc6 A SD MET 143 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 A NE2 HIS 299 A HIS 306 1_555 C CU CU . A CU 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc8 C CU CU . A CU 502 1_555 D N NO . A NO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc9 C CU CU . A CU 502 1_555 D O NO . A NO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 238 n n N O2 NO2 sing 239 n n # _atom_sites.entry_id 5I6N _atom_sites.fract_transf_matrix[1][1] 0.010505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 NO A 1 503 1 NO NO . E 4 NO2 A 1 504 546 NO2 NO2 . F 4 NO2 A 1 505 547 NO2 NO2 . G 4 NO2 A 1 506 545 NO2 NO2 . H 4 NO2 A 1 507 546 NO2 NO2 . I 4 NO2 A 1 508 547 NO2 NO2 . J 4 NO2 A 1 509 548 NO2 NO2 . K 5 HOH A 1 601 255 HOH HOH . K 5 HOH A 2 602 2300 HOH HOH . K 5 HOH A 3 603 2314 HOH HOH . K 5 HOH A 4 604 2416 HOH HOH . K 5 HOH A 5 605 2230 HOH HOH . K 5 HOH A 6 606 2399 HOH HOH . K 5 HOH A 7 607 2326 HOH HOH . K 5 HOH A 8 608 2072 HOH HOH . K 5 HOH A 9 609 2286 HOH HOH . K 5 HOH A 10 610 2436 HOH HOH . K 5 HOH A 11 611 2203 HOH HOH . K 5 HOH A 12 612 2073 HOH HOH . K 5 HOH A 13 613 2023 HOH HOH . K 5 HOH A 14 614 2281 HOH HOH . K 5 HOH A 15 615 2151 HOH HOH . K 5 HOH A 16 616 2301 HOH HOH . K 5 HOH A 17 617 8 HOH HOH . K 5 HOH A 18 618 2169 HOH HOH . K 5 HOH A 19 619 2061 HOH HOH . K 5 HOH A 20 620 2212 HOH HOH . K 5 HOH A 21 621 2253 HOH HOH . K 5 HOH A 22 622 2357 HOH HOH . K 5 HOH A 23 623 2265 HOH HOH . K 5 HOH A 24 624 2220 HOH HOH . K 5 HOH A 25 625 2138 HOH HOH . K 5 HOH A 26 626 2022 HOH HOH . K 5 HOH A 27 627 2058 HOH HOH . K 5 HOH A 28 628 2261 HOH HOH . K 5 HOH A 29 629 2162 HOH HOH . K 5 HOH A 30 630 35 HOH HOH . K 5 HOH A 31 631 2322 HOH HOH . K 5 HOH A 32 632 2291 HOH HOH . K 5 HOH A 33 633 2114 HOH HOH . K 5 HOH A 34 634 2405 HOH HOH . K 5 HOH A 35 635 2387 HOH HOH . K 5 HOH A 36 636 256 HOH HOH . K 5 HOH A 37 637 2273 HOH HOH . K 5 HOH A 38 638 2338 HOH HOH . K 5 HOH A 39 639 2037 HOH HOH . K 5 HOH A 40 640 2247 HOH HOH . K 5 HOH A 41 641 2398 HOH HOH . K 5 HOH A 42 642 2401 HOH HOH . K 5 HOH A 43 643 2056 HOH HOH . K 5 HOH A 44 644 2362 HOH HOH . K 5 HOH A 45 645 2372 HOH HOH . K 5 HOH A 46 646 2112 HOH HOH . K 5 HOH A 47 647 2386 HOH HOH . K 5 HOH A 48 648 2340 HOH HOH . K 5 HOH A 49 649 2397 HOH HOH . K 5 HOH A 50 650 2158 HOH HOH . K 5 HOH A 51 651 2433 HOH HOH . K 5 HOH A 52 652 2403 HOH HOH . K 5 HOH A 53 653 2239 HOH HOH . K 5 HOH A 54 654 2324 HOH HOH . K 5 HOH A 55 655 2388 HOH HOH . K 5 HOH A 56 656 2424 HOH HOH . K 5 HOH A 57 657 2142 HOH HOH . K 5 HOH A 58 658 2277 HOH HOH . K 5 HOH A 59 659 2332 HOH HOH . K 5 HOH A 60 660 2064 HOH HOH . K 5 HOH A 61 661 2105 HOH HOH . K 5 HOH A 62 662 2283 HOH HOH . K 5 HOH A 63 663 2451 HOH HOH . K 5 HOH A 64 664 2365 HOH HOH . K 5 HOH A 65 665 2163 HOH HOH . K 5 HOH A 66 666 2317 HOH HOH . K 5 HOH A 67 667 2423 HOH HOH . K 5 HOH A 68 668 2148 HOH HOH . K 5 HOH A 69 669 2071 HOH HOH . K 5 HOH A 70 670 2391 HOH HOH . K 5 HOH A 71 671 2389 HOH HOH . K 5 HOH A 72 672 2223 HOH HOH . K 5 HOH A 73 673 2323 HOH HOH . K 5 HOH A 74 674 2355 HOH HOH . K 5 HOH A 75 675 2400 HOH HOH . K 5 HOH A 76 676 2241 HOH HOH . K 5 HOH A 77 677 2154 HOH HOH . K 5 HOH A 78 678 2153 HOH HOH . K 5 HOH A 79 679 213 HOH HOH . K 5 HOH A 80 680 2404 HOH HOH . K 5 HOH A 81 681 250 HOH HOH . K 5 HOH A 82 682 2385 HOH HOH . K 5 HOH A 83 683 2164 HOH HOH . K 5 HOH A 84 684 2356 HOH HOH . K 5 HOH A 85 685 2410 HOH HOH . K 5 HOH A 86 686 2 HOH HOH . K 5 HOH A 87 687 2143 HOH HOH . K 5 HOH A 88 688 15 HOH HOH . K 5 HOH A 89 689 2282 HOH HOH . K 5 HOH A 90 690 2378 HOH HOH . K 5 HOH A 91 691 2337 HOH HOH . K 5 HOH A 92 692 2328 HOH HOH . K 5 HOH A 93 693 2266 HOH HOH . K 5 HOH A 94 694 2165 HOH HOH . K 5 HOH A 95 695 2236 HOH HOH . K 5 HOH A 96 696 2249 HOH HOH . K 5 HOH A 97 697 2090 HOH HOH . K 5 HOH A 98 698 2294 HOH HOH . K 5 HOH A 99 699 2411 HOH HOH . K 5 HOH A 100 700 2224 HOH HOH . K 5 HOH A 101 701 2139 HOH HOH . K 5 HOH A 102 702 2302 HOH HOH . K 5 HOH A 103 703 2219 HOH HOH . K 5 HOH A 104 704 2182 HOH HOH . K 5 HOH A 105 705 2246 HOH HOH . K 5 HOH A 106 706 2339 HOH HOH . K 5 HOH A 107 707 263 HOH HOH . K 5 HOH A 108 708 2145 HOH HOH . K 5 HOH A 109 709 2284 HOH HOH . K 5 HOH A 110 710 2008 HOH HOH . K 5 HOH A 111 711 2457 HOH HOH . K 5 HOH A 112 712 2276 HOH HOH . K 5 HOH A 113 713 2020 HOH HOH . K 5 HOH A 114 714 2384 HOH HOH . K 5 HOH A 115 715 2127 HOH HOH . K 5 HOH A 116 716 19 HOH HOH . K 5 HOH A 117 717 2208 HOH HOH . K 5 HOH A 118 718 2271 HOH HOH . K 5 HOH A 119 719 2330 HOH HOH . K 5 HOH A 120 720 2012 HOH HOH . K 5 HOH A 121 721 2110 HOH HOH . K 5 HOH A 122 722 2449 HOH HOH . K 5 HOH A 123 723 2371 HOH HOH . K 5 HOH A 124 724 2262 HOH HOH . K 5 HOH A 125 725 2181 HOH HOH . K 5 HOH A 126 726 2468 HOH HOH . K 5 HOH A 127 727 2427 HOH HOH . K 5 HOH A 128 728 2235 HOH HOH . K 5 HOH A 129 729 17 HOH HOH . K 5 HOH A 130 730 2278 HOH HOH . K 5 HOH A 131 731 12 HOH HOH . K 5 HOH A 132 732 2307 HOH HOH . K 5 HOH A 133 733 2098 HOH HOH . K 5 HOH A 134 734 2184 HOH HOH . K 5 HOH A 135 735 2345 HOH HOH . K 5 HOH A 136 736 2417 HOH HOH . K 5 HOH A 137 737 2347 HOH HOH . K 5 HOH A 138 738 2264 HOH HOH . K 5 HOH A 139 739 2226 HOH HOH . K 5 HOH A 140 740 148 HOH HOH . K 5 HOH A 141 741 2134 HOH HOH . K 5 HOH A 142 742 2335 HOH HOH . K 5 HOH A 143 743 2180 HOH HOH . K 5 HOH A 144 744 2392 HOH HOH . K 5 HOH A 145 745 252 HOH HOH . K 5 HOH A 146 746 2444 HOH HOH . K 5 HOH A 147 747 2244 HOH HOH . K 5 HOH A 148 748 199 HOH HOH . K 5 HOH A 149 749 260 HOH HOH . K 5 HOH A 150 750 2131 HOH HOH . K 5 HOH A 151 751 2402 HOH HOH . K 5 HOH A 152 752 233 HOH HOH . K 5 HOH A 153 753 2050 HOH HOH . K 5 HOH A 154 754 262 HOH HOH . K 5 HOH A 155 755 2422 HOH HOH . K 5 HOH A 156 756 2446 HOH HOH . K 5 HOH A 157 757 261 HOH HOH . K 5 HOH A 158 758 2034 HOH HOH . K 5 HOH A 159 759 2342 HOH HOH . K 5 HOH A 160 760 2052 HOH HOH . K 5 HOH A 161 761 2377 HOH HOH . K 5 HOH A 162 762 2030 HOH HOH . K 5 HOH A 163 763 2029 HOH HOH . K 5 HOH A 164 764 2078 HOH HOH . K 5 HOH A 165 765 2081 HOH HOH . K 5 HOH A 166 766 2343 HOH HOH . K 5 HOH A 167 767 2095 HOH HOH . K 5 HOH A 168 768 2091 HOH HOH . K 5 HOH A 169 769 2040 HOH HOH . K 5 HOH A 170 770 264 HOH HOH . K 5 HOH A 171 771 2054 HOH HOH . K 5 HOH A 172 772 2191 HOH HOH . K 5 HOH A 173 773 2019 HOH HOH . K 5 HOH A 174 774 2179 HOH HOH . K 5 HOH A 175 775 2482 HOH HOH . K 5 HOH A 176 776 2103 HOH HOH . K 5 HOH A 177 777 2093 HOH HOH . K 5 HOH A 178 778 2370 HOH HOH . K 5 HOH A 179 779 237 HOH HOH . K 5 HOH A 180 780 2432 HOH HOH . K 5 HOH A 181 781 2280 HOH HOH . K 5 HOH A 182 782 265 HOH HOH . K 5 HOH A 183 783 2312 HOH HOH . K 5 HOH A 184 784 2287 HOH HOH . K 5 HOH A 185 785 2447 HOH HOH . K 5 HOH A 186 786 2070 HOH HOH . K 5 HOH A 187 787 2189 HOH HOH . K 5 HOH A 188 788 2290 HOH HOH . K 5 HOH A 189 789 2135 HOH HOH . K 5 HOH A 190 790 3 HOH HOH . K 5 HOH A 191 791 2409 HOH HOH . K 5 HOH A 192 792 2069 HOH HOH . K 5 HOH A 193 793 2460 HOH HOH . K 5 HOH A 194 794 2118 HOH HOH . K 5 HOH A 195 795 2248 HOH HOH . K 5 HOH A 196 796 2263 HOH HOH . K 5 HOH A 197 797 218 HOH HOH . K 5 HOH A 198 798 2394 HOH HOH . K 5 HOH A 199 799 2233 HOH HOH . K 5 HOH A 200 800 2137 HOH HOH . K 5 HOH A 201 801 2270 HOH HOH . K 5 HOH A 202 802 2104 HOH HOH . K 5 HOH A 203 803 2048 HOH HOH . K 5 HOH A 204 804 2316 HOH HOH . K 5 HOH A 205 805 2174 HOH HOH . K 5 HOH A 206 806 2057 HOH HOH . K 5 HOH A 207 807 2373 HOH HOH . K 5 HOH A 208 808 2232 HOH HOH . K 5 HOH A 209 809 2364 HOH HOH . K 5 HOH A 210 810 2014 HOH HOH . K 5 HOH A 211 811 2395 HOH HOH . K 5 HOH A 212 812 2480 HOH HOH . K 5 HOH A 213 813 2136 HOH HOH . K 5 HOH A 214 814 2079 HOH HOH . K 5 HOH A 215 815 2412 HOH HOH . K 5 HOH A 216 816 2141 HOH HOH . K 5 HOH A 217 817 2415 HOH HOH . K 5 HOH A 218 818 11 HOH HOH . K 5 HOH A 219 819 30 HOH HOH . K 5 HOH A 220 820 2107 HOH HOH . K 5 HOH A 221 821 2305 HOH HOH . K 5 HOH A 222 822 2197 HOH HOH . K 5 HOH A 223 823 266 HOH HOH . K 5 HOH A 224 824 2047 HOH HOH . K 5 HOH A 225 825 245 HOH HOH . K 5 HOH A 226 826 258 HOH HOH . K 5 HOH A 227 827 20 HOH HOH . K 5 HOH A 228 828 2221 HOH HOH . K 5 HOH A 229 829 2275 HOH HOH . K 5 HOH A 230 830 2374 HOH HOH . K 5 HOH A 231 831 2055 HOH HOH . K 5 HOH A 232 832 2168 HOH HOH . K 5 HOH A 233 833 2113 HOH HOH . K 5 HOH A 234 834 2080 HOH HOH . K 5 HOH A 235 835 7 HOH HOH . K 5 HOH A 236 836 2123 HOH HOH . K 5 HOH A 237 837 2129 HOH HOH . K 5 HOH A 238 838 2046 HOH HOH . K 5 HOH A 239 839 2067 HOH HOH . K 5 HOH A 240 840 242 HOH HOH . K 5 HOH A 241 841 6 HOH HOH . K 5 HOH A 242 842 2017 HOH HOH . K 5 HOH A 243 843 2049 HOH HOH . K 5 HOH A 244 844 46 HOH HOH . K 5 HOH A 245 845 2167 HOH HOH . K 5 HOH A 246 846 2171 HOH HOH . K 5 HOH A 247 847 2041 HOH HOH . K 5 HOH A 248 848 251 HOH HOH . K 5 HOH A 249 849 70 HOH HOH . K 5 HOH A 250 850 2250 HOH HOH . K 5 HOH A 251 851 2111 HOH HOH . K 5 HOH A 252 852 2218 HOH HOH . K 5 HOH A 253 853 2152 HOH HOH . K 5 HOH A 254 854 2043 HOH HOH . K 5 HOH A 255 855 2132 HOH HOH . K 5 HOH A 256 856 2255 HOH HOH . K 5 HOH A 257 857 2051 HOH HOH . K 5 HOH A 258 858 2044 HOH HOH . K 5 HOH A 259 859 254 HOH HOH . K 5 HOH A 260 860 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . H 4 3.543 -6.674 -3.747 1 35.74 ? N NO2 507 A 1 HETATM 2 O O1 NO2 . . . H 4 4.234 -6.951 -2.799 1 18.31 ? O1 NO2 507 A 1 HETATM 3 O O2 NO2 . . . H 4 3.852 -5.504 -4.397 1 38.58 ? O2 NO2 507 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #