data_5I6O # _model_server_result.job_id qlPZglPTIHdGUw-qLC9oGg _model_server_result.datetime_utc '2024-11-15 11:57:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5I6O # _exptl.entry_id 5I6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 30.006 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRIC OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I6O _cell.length_a 95.236 _cell.length_b 95.236 _cell.length_c 95.236 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 88 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A NE2 HIS 93 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A NE2 HIS 128 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A SG CYS 129 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc5 A ND1 HIS 138 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc6 A SD MET 143 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A NE2 HIS 299 A HIS 306 1_555 C CU CU . A CU 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 C CU CU . A CU 502 1_555 D N NO . A NO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 C CU CU . A CU 502 1_555 D O NO . A NO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? # _chem_comp.formula 'N O' _chem_comp.formula_weight 30.006 _chem_comp.id NO _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRIC OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nitrogen monoxide' # _chem_comp_bond.atom_id_1 N _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id NO _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 239 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 5I6O _atom_sites.fract_transf_matrix[1][1] 0.0105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 NO A 1 503 1 NO NO . E 4 2NO A 1 504 548 2NO 2NO . F 5 HOH A 1 601 2311 HOH HOH . F 5 HOH A 2 602 2368 HOH HOH . F 5 HOH A 3 603 2399 HOH HOH . F 5 HOH A 4 604 2291 HOH HOH . F 5 HOH A 5 605 2286 HOH HOH . F 5 HOH A 6 606 2151 HOH HOH . F 5 HOH A 7 607 2261 HOH HOH . F 5 HOH A 8 608 225 HOH HOH . F 5 HOH A 9 609 2436 HOH HOH . F 5 HOH A 10 610 2169 HOH HOH . F 5 HOH A 11 611 2326 HOH HOH . F 5 HOH A 12 612 2073 HOH HOH . F 5 HOH A 13 613 2386 HOH HOH . F 5 HOH A 14 614 2138 HOH HOH . F 5 HOH A 15 615 2273 HOH HOH . F 5 HOH A 16 616 2362 HOH HOH . F 5 HOH A 17 617 2398 HOH HOH . F 5 HOH A 18 618 2405 HOH HOH . F 5 HOH A 19 619 274 HOH HOH . F 5 HOH A 20 620 2236 HOH HOH . F 5 HOH A 21 621 35 HOH HOH . F 5 HOH A 22 622 2433 HOH HOH . F 5 HOH A 23 623 2061 HOH HOH . F 5 HOH A 24 624 8 HOH HOH . F 5 HOH A 25 625 2241 HOH HOH . F 5 HOH A 26 626 2283 HOH HOH . F 5 HOH A 27 627 2220 HOH HOH . F 5 HOH A 28 628 2020 HOH HOH . F 5 HOH A 29 629 2451 HOH HOH . F 5 HOH A 30 630 12 HOH HOH . F 5 HOH A 31 631 2401 HOH HOH . F 5 HOH A 32 632 2223 HOH HOH . F 5 HOH A 33 633 2064 HOH HOH . F 5 HOH A 34 634 2114 HOH HOH . F 5 HOH A 35 635 2056 HOH HOH . F 5 HOH A 36 636 2071 HOH HOH . F 5 HOH A 37 637 2281 HOH HOH . F 5 HOH A 38 638 2403 HOH HOH . F 5 HOH A 39 639 2340 HOH HOH . F 5 HOH A 40 640 2339 HOH HOH . F 5 HOH A 41 641 2112 HOH HOH . F 5 HOH A 42 642 2397 HOH HOH . F 5 HOH A 43 643 2372 HOH HOH . F 5 HOH A 44 644 2338 HOH HOH . F 5 HOH A 45 645 213 HOH HOH . F 5 HOH A 46 646 2265 HOH HOH . F 5 HOH A 47 647 2345 HOH HOH . F 5 HOH A 48 648 2090 HOH HOH . F 5 HOH A 49 649 2022 HOH HOH . F 5 HOH A 50 650 2416 HOH HOH . F 5 HOH A 51 651 271 HOH HOH . F 5 HOH A 52 652 2328 HOH HOH . F 5 HOH A 53 653 2247 HOH HOH . F 5 HOH A 54 654 2317 HOH HOH . F 5 HOH A 55 655 2127 HOH HOH . F 5 HOH A 56 656 2357 HOH HOH . F 5 HOH A 57 657 2142 HOH HOH . F 5 HOH A 58 658 2012 HOH HOH . F 5 HOH A 59 659 2365 HOH HOH . F 5 HOH A 60 660 2124 HOH HOH . F 5 HOH A 61 661 2143 HOH HOH . F 5 HOH A 62 662 2300 HOH HOH . F 5 HOH A 63 663 2239 HOH HOH . F 5 HOH A 64 664 2457 HOH HOH . F 5 HOH A 65 665 2355 HOH HOH . F 5 HOH A 66 666 2008 HOH HOH . F 5 HOH A 67 667 2182 HOH HOH . F 5 HOH A 68 668 2337 HOH HOH . F 5 HOH A 69 669 2423 HOH HOH . F 5 HOH A 70 670 2391 HOH HOH . F 5 HOH A 71 671 2145 HOH HOH . F 5 HOH A 72 672 2 HOH HOH . F 5 HOH A 73 673 2424 HOH HOH . F 5 HOH A 74 674 2246 HOH HOH . F 5 HOH A 75 675 2271 HOH HOH . F 5 HOH A 76 676 2384 HOH HOH . F 5 HOH A 77 677 2118 HOH HOH . F 5 HOH A 78 678 2139 HOH HOH . F 5 HOH A 79 679 2230 HOH HOH . F 5 HOH A 80 680 2078 HOH HOH . F 5 HOH A 81 681 3 HOH HOH . F 5 HOH A 82 682 2378 HOH HOH . F 5 HOH A 83 683 2266 HOH HOH . F 5 HOH A 84 684 2427 HOH HOH . F 5 HOH A 85 685 2301 HOH HOH . F 5 HOH A 86 686 2324 HOH HOH . F 5 HOH A 87 687 2181 HOH HOH . F 5 HOH A 88 688 2276 HOH HOH . F 5 HOH A 89 689 2385 HOH HOH . F 5 HOH A 90 690 2052 HOH HOH . F 5 HOH A 91 691 15 HOH HOH . F 5 HOH A 92 692 2154 HOH HOH . F 5 HOH A 93 693 2468 HOH HOH . F 5 HOH A 94 694 2164 HOH HOH . F 5 HOH A 95 695 260 HOH HOH . F 5 HOH A 96 696 2165 HOH HOH . F 5 HOH A 97 697 2277 HOH HOH . F 5 HOH A 98 698 2284 HOH HOH . F 5 HOH A 99 699 250 HOH HOH . F 5 HOH A 100 700 2449 HOH HOH . F 5 HOH A 101 701 2400 HOH HOH . F 5 HOH A 102 702 2180 HOH HOH . F 5 HOH A 103 703 2410 HOH HOH . F 5 HOH A 104 704 2134 HOH HOH . F 5 HOH A 105 705 2184 HOH HOH . F 5 HOH A 106 706 2323 HOH HOH . F 5 HOH A 107 707 2371 HOH HOH . F 5 HOH A 108 708 2244 HOH HOH . F 5 HOH A 109 709 2411 HOH HOH . F 5 HOH A 110 710 265 HOH HOH . F 5 HOH A 111 711 2208 HOH HOH . F 5 HOH A 112 712 2262 HOH HOH . F 5 HOH A 113 713 2307 HOH HOH . F 5 HOH A 114 714 2158 HOH HOH . F 5 HOH A 115 715 2282 HOH HOH . F 5 HOH A 116 716 2219 HOH HOH . F 5 HOH A 117 717 2249 HOH HOH . F 5 HOH A 118 718 199 HOH HOH . F 5 HOH A 119 719 2179 HOH HOH . F 5 HOH A 120 720 2356 HOH HOH . F 5 HOH A 121 721 2347 HOH HOH . F 5 HOH A 122 722 2370 HOH HOH . F 5 HOH A 123 723 2335 HOH HOH . F 5 HOH A 124 724 2287 HOH HOH . F 5 HOH A 125 725 2235 HOH HOH . F 5 HOH A 126 726 2070 HOH HOH . F 5 HOH A 127 727 272 HOH HOH . F 5 HOH A 128 728 2098 HOH HOH . F 5 HOH A 129 729 2189 HOH HOH . F 5 HOH A 130 730 2332 HOH HOH . F 5 HOH A 131 731 2394 HOH HOH . F 5 HOH A 132 732 2342 HOH HOH . F 5 HOH A 133 733 2482 HOH HOH . F 5 HOH A 134 734 2093 HOH HOH . F 5 HOH A 135 735 266 HOH HOH . F 5 HOH A 136 736 2392 HOH HOH . F 5 HOH A 137 737 2343 HOH HOH . F 5 HOH A 138 738 2091 HOH HOH . F 5 HOH A 139 739 17 HOH HOH . F 5 HOH A 140 740 2263 HOH HOH . F 5 HOH A 141 741 2402 HOH HOH . F 5 HOH A 142 742 2103 HOH HOH . F 5 HOH A 143 743 2110 HOH HOH . F 5 HOH A 144 744 2040 HOH HOH . F 5 HOH A 145 745 2447 HOH HOH . F 5 HOH A 146 746 2054 HOH HOH . F 5 HOH A 147 747 2029 HOH HOH . F 5 HOH A 148 748 2161 HOH HOH . F 5 HOH A 149 749 2280 HOH HOH . F 5 HOH A 150 750 2422 HOH HOH . F 5 HOH A 151 751 2224 HOH HOH . F 5 HOH A 152 752 2135 HOH HOH . F 5 HOH A 153 753 2248 HOH HOH . F 5 HOH A 154 754 2095 HOH HOH . F 5 HOH A 155 755 2373 HOH HOH . F 5 HOH A 156 756 2104 HOH HOH . F 5 HOH A 157 757 2264 HOH HOH . F 5 HOH A 158 758 2432 HOH HOH . F 5 HOH A 159 759 2081 HOH HOH . F 5 HOH A 160 760 2048 HOH HOH . F 5 HOH A 161 761 2057 HOH HOH . F 5 HOH A 162 762 2050 HOH HOH . F 5 HOH A 163 763 102 HOH HOH . F 5 HOH A 164 764 264 HOH HOH . F 5 HOH A 165 765 93 HOH HOH . F 5 HOH A 166 766 2191 HOH HOH . F 5 HOH A 167 767 2014 HOH HOH . F 5 HOH A 168 768 2279 HOH HOH . F 5 HOH A 169 769 4 HOH HOH . F 5 HOH A 170 770 2233 HOH HOH . F 5 HOH A 171 771 2444 HOH HOH . F 5 HOH A 172 772 2270 HOH HOH . F 5 HOH A 173 773 2363 HOH HOH . F 5 HOH A 174 774 2019 HOH HOH . F 5 HOH A 175 775 2316 HOH HOH . F 5 HOH A 176 776 2480 HOH HOH . F 5 HOH A 177 777 2302 HOH HOH . F 5 HOH A 178 778 2409 HOH HOH . F 5 HOH A 179 779 218 HOH HOH . F 5 HOH A 180 780 2215 HOH HOH . F 5 HOH A 181 781 2462 HOH HOH . F 5 HOH A 182 782 2141 HOH HOH . F 5 HOH A 183 783 2080 HOH HOH . F 5 HOH A 184 784 2197 HOH HOH . F 5 HOH A 185 785 2293 HOH HOH . F 5 HOH A 186 786 2113 HOH HOH . F 5 HOH A 187 787 2067 HOH HOH . F 5 HOH A 188 788 2174 HOH HOH . F 5 HOH A 189 789 2168 HOH HOH . F 5 HOH A 190 790 2129 HOH HOH . F 5 HOH A 191 791 2123 HOH HOH . F 5 HOH A 192 792 2047 HOH HOH . F 5 HOH A 193 793 2049 HOH HOH . F 5 HOH A 194 794 2017 HOH HOH . F 5 HOH A 195 795 2046 HOH HOH . F 5 HOH A 196 796 2167 HOH HOH . F 5 HOH A 197 797 273 HOH HOH . F 5 HOH A 198 798 2051 HOH HOH . F 5 HOH A 199 799 2043 HOH HOH . F 5 HOH A 200 800 2132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO . . . D 3 -8.209 10.097 15.912 0.6 29.83 ? N NO 503 A 1 HETATM 2 O O NO . . . D 3 -9.063 9.227 15.799 0.6 36.76 ? O NO 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 2 #