data_5I6X # _model_server_result.job_id -bfJ8DbNslU8x5YPDe7r-Q _model_server_result.datetime_utc '2024-10-13 19:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 5I6X # _exptl.entry_id 5I6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.365 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Paroxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I6X _cell.length_a 129.15 _cell.length_b 162.83 _cell.length_c 140.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -129.15 0 70.205 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 G C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? metalc ? metalc1 A O ALA 23 A ALA 96 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A OD1 ASN 28 A ASN 101 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A O SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc4 A OG SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 A OD1 ASN 295 A ASN 368 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? # _chem_comp.formula 'C19 H20 F N O3' _chem_comp.formula_weight 329.365 _chem_comp.id 8PR _chem_comp.mon_nstd_flag . _chem_comp.name Paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-[(1,3-benzodioxol-5-yloxy)methyl]-4-(4-fluorophenyl)piperidine # _atom_sites.entry_id 5I6X _atom_sites.fract_transf_matrix[1][1] 0.007743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 701 700 NAG NAG . E 5 CLR A 1 702 702 CLR CLR . F 6 LMT A 1 703 705 LMT LMT . G 4 NAG A 1 704 706 NAG NAG . H 7 8PR A 1 705 800 8PR 8PR . I 8 CL A 1 706 901 CL CL . J 9 NA A 1 707 902 NA NA . K 10 HOH A 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAA 8PR . . . H 7 -33.511 -16.554 0.396 1 90.57 ? FAA 8PR 705 A 1 HETATM 2 C CAB 8PR . . . H 7 -34.848 -18.384 -0.143 1 96.88 ? CAB 8PR 705 A 1 HETATM 3 C CAC 8PR . . . H 7 -32.635 -18.694 0.583 1 98.22 ? CAC 8PR 705 A 1 HETATM 4 C CAD 8PR . . . H 7 -31.451 -23.378 4.77 1 111.33 ? CAD 8PR 705 A 1 HETATM 5 C CAE 8PR . . . H 7 -35.028 -19.737 -0.266 1 85.65 ? CAE 8PR 705 A 1 HETATM 6 C CAF 8PR . . . H 7 -32.811 -20.066 0.459 1 95.08 ? CAF 8PR 705 A 1 HETATM 7 C CAG 8PR . . . H 7 -30.425 -22.791 5.513 1 114.4 ? CAG 8PR 705 A 1 HETATM 8 C CAH 8PR . . . H 7 -30.946 -21.881 2.958 1 98.61 ? CAH 8PR 705 A 1 HETATM 9 C CAI 8PR . . . H 7 -35.542 -23.945 -1.274 1 109.63 ? CAI 8PR 705 A 1 HETATM 10 C CAJ 8PR . . . H 7 -35.282 -22.446 -1.125 1 107.56 ? CAJ 8PR 705 A 1 HETATM 11 C CAK 8PR . . . H 7 -34.641 -24.282 0.978 1 90.34 ? CAK 8PR 705 A 1 HETATM 12 C CAL 8PR . . . H 7 -28.026 -20.303 4.436 1 117.43 ? CAL 8PR 705 A 1 HETATM 13 C CAM 8PR . . . H 7 -33.686 -22.311 2.285 1 95.24 ? CAM 8PR 705 A 1 HETATM 14 N NAN 8PR . . . H 7 -35.668 -24.661 0.005 1 102.54 ? NAN 8PR 705 A 1 HETATM 15 O OAO 8PR . . . H 7 -32.617 -23.215 2.409 1 97.35 ? OAO 8PR 705 A 1 HETATM 16 O OAP 8PR . . . H 7 -28.591 -20.995 5.504 1 112.1 ? OAP 8PR 705 A 1 HETATM 17 O OAQ 8PR . . . H 7 -29.015 -20.263 3.437 1 119.96 ? OAQ 8PR 705 A 1 HETATM 18 C CAR 8PR . . . H 7 -33.643 -17.862 0.285 1 97.62 ? CAR 8PR 705 A 1 HETATM 19 C CAS 8PR . . . H 7 -31.703 -22.914 3.507 1 103.08 ? CAS 8PR 705 A 1 HETATM 20 C CAT 8PR . . . H 7 -33.998 -20.589 0.033 1 87.37 ? CAT 8PR 705 A 1 HETATM 21 C CAU 8PR . . . H 7 -29.677 -21.766 4.977 1 113 ? CAU 8PR 705 A 1 HETATM 22 C CAV 8PR . . . H 7 -29.938 -21.315 3.707 1 108.6 ? CAV 8PR 705 A 1 HETATM 23 C CAW 8PR . . . H 7 -34.622 -22.756 1.153 1 92.17 ? CAW 8PR 705 A 1 HETATM 24 C CAX 8PR . . . H 7 -34.229 -22.149 -0.123 1 95.09 ? CAX 8PR 705 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #