data_5I71 # _model_server_result.job_id mjVdG7R2BERn1Wlw1jIEmQ _model_server_result.datetime_utc '2024-11-25 09:05:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":703}' # _entry.id 5I71 # _exptl.entry_id 5I71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I71 _cell.length_a 129.72 _cell.length_b 163.74 _cell.length_c 140.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -129.72 0 70.28 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 A O ALA 23 A ALA 96 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc3 A O VAL 24 A VAL 97 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A OD1 ASN 28 A ASN 101 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 A O SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 A OG SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 A OD1 ASN 295 A ASN 368 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 A O LEU 361 A LEU 434 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 A OD1 ASP 364 A ASP 437 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc10 A OG SER 365 A SER 438 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc11 K NA NA . A NA 708 1_555 L O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 117 n n C1 C10 CLR sing 118 n n C1 H11 CLR sing 119 n n C1 H12 CLR sing 120 n n C2 C3 CLR sing 121 n n C2 H21 CLR sing 122 n n C2 H22 CLR sing 123 n n C3 C4 CLR sing 124 n n C3 O1 CLR sing 125 n n C3 H3 CLR sing 126 n n C4 C5 CLR sing 127 n n C4 H41 CLR sing 128 n n C4 H42 CLR sing 129 n n C5 C6 CLR doub 130 n n C5 C10 CLR sing 131 n n C6 C7 CLR sing 132 n n C6 H6 CLR sing 133 n n C7 C8 CLR sing 134 n n C7 H71 CLR sing 135 n n C7 H72 CLR sing 136 n n C8 C9 CLR sing 137 n n C8 C14 CLR sing 138 n n C8 H8 CLR sing 139 n n C9 C10 CLR sing 140 n n C9 C11 CLR sing 141 n n C9 H9 CLR sing 142 n n C10 C19 CLR sing 143 n n C11 C12 CLR sing 144 n n C11 H111 CLR sing 145 n n C11 H112 CLR sing 146 n n C12 C13 CLR sing 147 n n C12 H121 CLR sing 148 n n C12 H122 CLR sing 149 n n C13 C14 CLR sing 150 n n C13 C17 CLR sing 151 n n C13 C18 CLR sing 152 n n C14 C15 CLR sing 153 n n C14 H14 CLR sing 154 n n C15 C16 CLR sing 155 n n C15 H151 CLR sing 156 n n C15 H152 CLR sing 157 n n C16 C17 CLR sing 158 n n C16 H161 CLR sing 159 n n C16 H162 CLR sing 160 n n C17 C20 CLR sing 161 n n C17 H17 CLR sing 162 n n C18 H181 CLR sing 163 n n C18 H182 CLR sing 164 n n C18 H183 CLR sing 165 n n C19 H191 CLR sing 166 n n C19 H192 CLR sing 167 n n C19 H193 CLR sing 168 n n C20 C21 CLR sing 169 n n C20 C22 CLR sing 170 n n C20 H20 CLR sing 171 n n C21 H211 CLR sing 172 n n C21 H212 CLR sing 173 n n C21 H213 CLR sing 174 n n C22 C23 CLR sing 175 n n C22 H221 CLR sing 176 n n C22 H222 CLR sing 177 n n C23 C24 CLR sing 178 n n C23 H231 CLR sing 179 n n C23 H232 CLR sing 180 n n C24 C25 CLR sing 181 n n C24 H241 CLR sing 182 n n C24 H242 CLR sing 183 n n C25 C26 CLR sing 184 n n C25 C27 CLR sing 185 n n C25 H25 CLR sing 186 n n C26 H261 CLR sing 187 n n C26 H262 CLR sing 188 n n C26 H263 CLR sing 189 n n C27 H271 CLR sing 190 n n C27 H272 CLR sing 191 n n C27 H273 CLR sing 192 n n O1 H1 CLR sing 193 n n # _atom_sites.entry_id 5I71 _atom_sites.fract_transf_matrix[1][1] 0.007709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 68P A 1 701 700 68P 68P . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 7 D12 A 1 704 703 D12 D12 . H 8 HEX A 1 705 704 HEX HEX . I 5 NAG A 1 706 705 NAG NAG . J 9 NA A 1 707 801 NA NA . K 9 NA A 1 708 802 NA NA . L 10 HOH A 1 901 901 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 -37.7 3.918 16.728 1 191.22 ? C1 CLR 703 A 1 HETATM 2 C C2 CLR . . . F 6 -38.17 4.272 18.13 1 199.45 ? C2 CLR 703 A 1 HETATM 3 C C3 CLR . . . F 6 -38.485 2.984 18.874 1 210.73 ? C3 CLR 703 A 1 HETATM 4 C C4 CLR . . . F 6 -37.247 2.106 18.964 1 194.31 ? C4 CLR 703 A 1 HETATM 5 C C5 CLR . . . F 6 -36.549 1.979 17.635 1 179.69 ? C5 CLR 703 A 1 HETATM 6 C C6 CLR . . . F 6 -36.074 0.79 17.259 1 172.85 ? C6 CLR 703 A 1 HETATM 7 C C7 CLR . . . F 6 -35.655 0.505 15.841 1 171.45 ? C7 CLR 703 A 1 HETATM 8 C C8 CLR . . . F 6 -34.928 1.716 15.309 1 171.44 ? C8 CLR 703 A 1 HETATM 9 C C9 CLR . . . F 6 -35.874 2.902 15.346 1 171 ? C9 CLR 703 A 1 HETATM 10 C C10 CLR . . . F 6 -36.365 3.203 16.773 1 177.86 ? C10 CLR 703 A 1 HETATM 11 C C11 CLR . . . F 6 -35.245 4.122 14.658 1 174.21 ? C11 CLR 703 A 1 HETATM 12 C C12 CLR . . . F 6 -34.586 3.816 13.307 1 174.95 ? C12 CLR 703 A 1 HETATM 13 C C13 CLR . . . F 6 -33.598 2.68 13.452 1 175.56 ? C13 CLR 703 A 1 HETATM 14 C C14 CLR . . . F 6 -34.418 1.499 13.904 1 178.21 ? C14 CLR 703 A 1 HETATM 15 C C15 CLR . . . F 6 -33.534 0.29 13.696 1 176.43 ? C15 CLR 703 A 1 HETATM 16 C C16 CLR . . . F 6 -32.725 0.651 12.459 1 173.77 ? C16 CLR 703 A 1 HETATM 17 C C17 CLR . . . F 6 -32.911 2.14 12.202 1 172.74 ? C17 CLR 703 A 1 HETATM 18 C C18 CLR . . . F 6 -32.568 3.091 14.496 1 180.68 ? C18 CLR 703 A 1 HETATM 19 C C19 CLR . . . F 6 -35.389 4.097 17.508 1 177.12 ? C19 CLR 703 A 1 HETATM 20 C C20 CLR . . . F 6 -31.564 2.757 11.849 1 161.75 ? C20 CLR 703 A 1 HETATM 21 C C21 CLR . . . F 6 -31.726 4.212 11.448 1 159.46 ? C21 CLR 703 A 1 HETATM 22 C C22 CLR . . . F 6 -30.848 1.967 10.761 1 174.06 ? C22 CLR 703 A 1 HETATM 23 C C23 CLR . . . F 6 -29.699 1.159 11.358 1 188.9 ? C23 CLR 703 A 1 HETATM 24 C C24 CLR . . . F 6 -29.482 -0.167 10.633 1 190.4 ? C24 CLR 703 A 1 HETATM 25 C C25 CLR . . . F 6 -28.026 -0.625 10.683 1 179.44 ? C25 CLR 703 A 1 HETATM 26 C C26 CLR . . . F 6 -27.928 -2.145 10.644 1 173.77 ? C26 CLR 703 A 1 HETATM 27 C C27 CLR . . . F 6 -27.214 -0.011 9.553 1 175.28 ? C27 CLR 703 A 1 HETATM 28 O O1 CLR . . . F 6 -38.92 3.302 20.197 1 209.56 ? O1 CLR 703 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #