data_5I73 # _model_server_result.job_id TwelJE0od8fNTDTzZUEWkg _model_server_result.datetime_utc '2024-10-13 21:13:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":703}' # _entry.id 5I73 # _exptl.entry_id 5I73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I73 _cell.length_a 129.85 _cell.length_b 163.21 _cell.length_c 140.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 129.85 0 70.235 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A O ALA 23 A ALA 96 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 A O VAL 24 A VAL 97 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 A OD1 ASN 28 A ASN 101 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 A O SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 A OG SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 A OD1 ASN 295 A ASN 368 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc8 A O LEU 361 A LEU 434 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc9 A OD1 ASP 364 A ASP 437 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc10 A OG SER 365 A SER 438 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc11 K NA NA . A NA 708 1_555 M O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 181 n n C1 C10 CLR sing 182 n n C1 H11 CLR sing 183 n n C1 H12 CLR sing 184 n n C2 C3 CLR sing 185 n n C2 H21 CLR sing 186 n n C2 H22 CLR sing 187 n n C3 C4 CLR sing 188 n n C3 O1 CLR sing 189 n n C3 H3 CLR sing 190 n n C4 C5 CLR sing 191 n n C4 H41 CLR sing 192 n n C4 H42 CLR sing 193 n n C5 C6 CLR doub 194 n n C5 C10 CLR sing 195 n n C6 C7 CLR sing 196 n n C6 H6 CLR sing 197 n n C7 C8 CLR sing 198 n n C7 H71 CLR sing 199 n n C7 H72 CLR sing 200 n n C8 C9 CLR sing 201 n n C8 C14 CLR sing 202 n n C8 H8 CLR sing 203 n n C9 C10 CLR sing 204 n n C9 C11 CLR sing 205 n n C9 H9 CLR sing 206 n n C10 C19 CLR sing 207 n n C11 C12 CLR sing 208 n n C11 H111 CLR sing 209 n n C11 H112 CLR sing 210 n n C12 C13 CLR sing 211 n n C12 H121 CLR sing 212 n n C12 H122 CLR sing 213 n n C13 C14 CLR sing 214 n n C13 C17 CLR sing 215 n n C13 C18 CLR sing 216 n n C14 C15 CLR sing 217 n n C14 H14 CLR sing 218 n n C15 C16 CLR sing 219 n n C15 H151 CLR sing 220 n n C15 H152 CLR sing 221 n n C16 C17 CLR sing 222 n n C16 H161 CLR sing 223 n n C16 H162 CLR sing 224 n n C17 C20 CLR sing 225 n n C17 H17 CLR sing 226 n n C18 H181 CLR sing 227 n n C18 H182 CLR sing 228 n n C18 H183 CLR sing 229 n n C19 H191 CLR sing 230 n n C19 H192 CLR sing 231 n n C19 H193 CLR sing 232 n n C20 C21 CLR sing 233 n n C20 C22 CLR sing 234 n n C20 H20 CLR sing 235 n n C21 H211 CLR sing 236 n n C21 H212 CLR sing 237 n n C21 H213 CLR sing 238 n n C22 C23 CLR sing 239 n n C22 H221 CLR sing 240 n n C22 H222 CLR sing 241 n n C23 C24 CLR sing 242 n n C23 H231 CLR sing 243 n n C23 H232 CLR sing 244 n n C24 C25 CLR sing 245 n n C24 H241 CLR sing 246 n n C24 H242 CLR sing 247 n n C25 C26 CLR sing 248 n n C25 C27 CLR sing 249 n n C25 H25 CLR sing 250 n n C26 H261 CLR sing 251 n n C26 H262 CLR sing 252 n n C26 H263 CLR sing 253 n n C27 H271 CLR sing 254 n n C27 H272 CLR sing 255 n n C27 H273 CLR sing 256 n n O1 H1 CLR sing 257 n n # _atom_sites.entry_id 5I73 _atom_sites.fract_transf_matrix[1][1] 0.007701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 68P A 1 701 700 68P LIG . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 7 C14 A 1 704 704 C14 C14 . H 4 68P A 1 705 705 68P LIG . I 5 NAG A 1 706 706 NAG NAG . J 8 NA A 1 707 802 NA NA . K 8 NA A 1 708 803 NA NA . L 9 ACA A 1 709 901 ACA ACA . M 10 HOH A 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 37.673 159.276 16.759 1 206.05 ? C1 CLR 703 A 1 HETATM 2 C C2 CLR . . . F 6 38.141 158.923 18.162 1 215.71 ? C2 CLR 703 A 1 HETATM 3 C C3 CLR . . . F 6 38.454 160.211 18.906 1 233.69 ? C3 CLR 703 A 1 HETATM 4 C C4 CLR . . . F 6 37.215 161.088 18.994 1 212.18 ? C4 CLR 703 A 1 HETATM 5 C C5 CLR . . . F 6 36.519 161.214 17.664 1 202.65 ? C5 CLR 703 A 1 HETATM 6 C C6 CLR . . . F 6 36.044 162.403 17.287 1 187.03 ? C6 CLR 703 A 1 HETATM 7 C C7 CLR . . . F 6 35.627 162.687 15.868 1 185.86 ? C7 CLR 703 A 1 HETATM 8 C C8 CLR . . . F 6 34.902 161.476 15.335 1 182.72 ? C8 CLR 703 A 1 HETATM 9 C C9 CLR . . . F 6 35.849 160.291 15.374 1 174.22 ? C9 CLR 703 A 1 HETATM 10 C C10 CLR . . . F 6 36.338 159.99 16.801 1 200.82 ? C10 CLR 703 A 1 HETATM 11 C C11 CLR . . . F 6 35.222 159.07 14.685 1 165.96 ? C11 CLR 703 A 1 HETATM 12 C C12 CLR . . . F 6 34.565 159.375 13.332 1 175.6 ? C12 CLR 703 A 1 HETATM 13 C C13 CLR . . . F 6 33.576 160.51 13.476 1 193.44 ? C13 CLR 703 A 1 HETATM 14 C C14 CLR . . . F 6 34.394 161.692 13.929 1 201.17 ? C14 CLR 703 A 1 HETATM 15 C C15 CLR . . . F 6 33.509 162.9 13.719 1 196.51 ? C15 CLR 703 A 1 HETATM 16 C C16 CLR . . . F 6 32.703 162.539 12.481 1 190.52 ? C16 CLR 703 A 1 HETATM 17 C C17 CLR . . . F 6 32.891 161.05 12.224 1 195.7 ? C17 CLR 703 A 1 HETATM 18 C C18 CLR . . . F 6 32.544 160.099 14.518 1 203.64 ? C18 CLR 703 A 1 HETATM 19 C C19 CLR . . . F 6 35.361 159.095 17.535 1 200.08 ? C19 CLR 703 A 1 HETATM 20 C C20 CLR . . . F 6 31.545 160.431 11.869 1 171.02 ? C20 CLR 703 A 1 HETATM 21 C C21 CLR . . . F 6 31.709 158.977 11.468 1 168.21 ? C21 CLR 703 A 1 HETATM 22 C C22 CLR . . . F 6 30.83 161.221 10.78 1 197.02 ? C22 CLR 703 A 1 HETATM 23 C C23 CLR . . . F 6 29.679 162.028 11.375 1 211.86 ? C23 CLR 703 A 1 HETATM 24 C C24 CLR . . . F 6 29.462 163.354 10.649 1 211.98 ? C24 CLR 703 A 1 HETATM 25 C C25 CLR . . . F 6 28.006 163.81 10.697 1 201.78 ? C25 CLR 703 A 1 HETATM 26 C C26 CLR . . . F 6 27.906 165.33 10.657 1 195.9 ? C26 CLR 703 A 1 HETATM 27 C C27 CLR . . . F 6 27.196 163.195 9.565 1 173.87 ? C27 CLR 703 A 1 HETATM 28 O O1 CLR . . . F 6 38.887 159.894 20.23 1 227.09 ? O1 CLR 703 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #