data_5I73 # _model_server_result.job_id wcmsu2t4eROZ7A43GsheWA _model_server_result.datetime_utc '2024-10-13 21:09:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":709}' # _entry.id 5I73 # _exptl.entry_id 5I73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-AMINOHEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I73 _cell.length_a 129.85 _cell.length_b 163.21 _cell.length_c 140.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 129.85 0 70.235 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O GLY 21 A GLY 94 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A O ALA 23 A ALA 96 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 A O VAL 24 A VAL 97 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 A OD1 ASN 28 A ASN 101 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 A O SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 A OG SER 263 A SER 336 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 A OD1 ASN 295 A ASN 368 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc8 A O LEU 361 A LEU 434 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc9 A OD1 ASP 364 A ASP 437 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc10 A OG SER 365 A SER 438 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc11 K NA NA . A NA 708 1_555 M O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id ACA _chem_comp.mon_nstd_flag . _chem_comp.name '6-AMINOHEXANOIC ACID' _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms 'AMINOCAPROIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACA doub 48 n n C OXT ACA sing 49 n n C C2 ACA sing 50 n n OXT HXT ACA sing 51 n n C2 C3 ACA sing 52 n n C2 H21 ACA sing 53 n n C2 H22 ACA sing 54 n n C3 C4 ACA sing 55 n n C3 H31 ACA sing 56 n n C3 H32 ACA sing 57 n n C4 C5 ACA sing 58 n n C4 H41 ACA sing 59 n n C4 H42 ACA sing 60 n n C5 C6 ACA sing 61 n n C5 H51 ACA sing 62 n n C5 H52 ACA sing 63 n n C6 N ACA sing 64 n n C6 H61 ACA sing 65 n n C6 H62 ACA sing 66 n n N H ACA sing 67 n n N H2 ACA sing 68 n n # _atom_sites.entry_id 5I73 _atom_sites.fract_transf_matrix[1][1] 0.007701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 68P A 1 701 700 68P LIG . E 5 NAG A 1 702 701 NAG NAG . F 6 CLR A 1 703 702 CLR CLR . G 7 C14 A 1 704 704 C14 C14 . H 4 68P A 1 705 705 68P LIG . I 5 NAG A 1 706 706 NAG NAG . J 8 NA A 1 707 802 NA NA . K 8 NA A 1 708 803 NA NA . L 9 ACA A 1 709 901 ACA ACA . M 10 HOH A 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACA . . . L 9 30.226 168.738 26.705 1 204.51 ? C ACA 709 A 1 HETATM 2 O O ACA . . . L 9 29.259 167.929 26.677 1 199.38 ? O ACA 709 A 1 HETATM 3 O OXT ACA . . . L 9 30.754 169.052 27.808 1 199.92 ? OXT ACA 709 A 1 HETATM 4 C C2 ACA . . . L 9 30.762 169.336 25.402 1 191.64 ? C2 ACA 709 A 1 HETATM 5 C C3 ACA . . . L 9 32.289 169.267 25.398 1 158.96 ? C3 ACA 709 A 1 HETATM 6 C C4 ACA . . . L 9 32.746 168.018 24.645 1 139.35 ? C4 ACA 709 A 1 HETATM 7 C C5 ACA . . . L 9 33.693 167.21 25.531 1 144.38 ? C5 ACA 709 A 1 HETATM 8 C C6 ACA . . . L 9 32.911 166.587 26.687 1 142.56 ? C6 ACA 709 A 1 HETATM 9 N N ACA . . . L 9 33.824 165.911 27.592 1 118.03 ? N ACA 709 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #