data_5I74 # _model_server_result.job_id b2pLjbqSdFlDr_WXV1upWw _model_server_result.datetime_utc '2024-11-24 12:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 5I74 # _exptl.entry_id 5I74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.298 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(4-bromophenyl)-1-[3-(dimethylamino)propyl]-1,3-dihydro-2-benzofuran-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I74 _cell.length_a 129.59 _cell.length_b 164 _cell.length_c 140.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 129.59 0 70.085 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C20 H21 Br N2 O' _chem_comp.formula_weight 385.298 _chem_comp.id 69D _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(4-bromophenyl)-1-[3-(dimethylamino)propyl]-1,3-dihydro-2-benzofuran-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C07 69D sing 1 n n C05 C10 69D sing 2 n n C05 O02 69D sing 3 n n C05 C06 69D sing 4 n n C07 C08 69D doub 5 n y C07 C13 69D sing 6 n y C08 C11 69D sing 7 n n C08 C14 69D sing 8 n y C10 C15 69D doub 9 n y C10 C16 69D sing 10 n y C13 C17 69D doub 11 n y C14 C18 69D doub 12 n y C15 C19 69D sing 13 n y C16 C20 69D doub 14 n y C17 C18 69D sing 15 n y C18 C24 69D sing 16 n n C19 C21 69D doub 17 n y C20 C21 69D sing 18 n y C21 BR 69D sing 19 n n C24 N04 69D trip 20 n n N03 C12 69D sing 21 n n N03 C22 69D sing 22 n n N03 C23 69D sing 23 n n C06 C09 69D sing 24 n n C09 C12 69D sing 25 n n C11 H1 69D sing 26 n n C11 H2 69D sing 27 n n C13 H4 69D sing 28 n n C14 H5 69D sing 29 n n C15 H6 69D sing 30 n n C16 H7 69D sing 31 n n C17 H8 69D sing 32 n n C19 H9 69D sing 33 n n C20 H10 69D sing 34 n n C06 H13 69D sing 35 n n C06 H14 69D sing 36 n n C09 H15 69D sing 37 n n C09 H16 69D sing 38 n n C12 H17 69D sing 39 n n C12 H18 69D sing 40 n n C22 H19 69D sing 41 n n C22 H20 69D sing 42 n n C22 H21 69D sing 43 n n C23 H22 69D sing 44 n n C23 H23 69D sing 45 n n C23 H24 69D sing 46 n n O02 C11 69D sing 47 n n # _atom_sites.entry_id 5I74 _atom_sites.fract_transf_matrix[1][1] 0.007717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 69D A 1 700 700 69D BCI . E 5 NAG A 1 701 701 NAG NAG . F 6 CLR A 1 702 702 CLR CLR . G 7 D12 A 1 703 703 D12 D12 . H 8 HEX A 1 704 704 HEX HEX . I 5 NAG A 1 705 705 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 69D . . . D 4 32.044 185.421 1.881 1 119.14 ? C05 69D 700 A 1 HETATM 2 C C07 69D . . . D 4 32.613 184.241 1.718 1 124.53 ? C07 69D 700 A 1 HETATM 3 C C08 69D . . . D 4 32.469 183.373 0.692 1 138.91 ? C08 69D 700 A 1 HETATM 4 C C10 69D . . . D 4 30.997 185.498 3.047 1 149.68 ? C10 69D 700 A 1 HETATM 5 C C11 69D . . . D 4 31.426 184.171 -0.2 1 181.31 ? C11 69D 700 A 1 HETATM 6 C C13 69D . . . D 4 33.503 183.729 2.607 1 160.38 ? C13 69D 700 A 1 HETATM 7 C C14 69D . . . D 4 33.306 182.024 0.755 1 170.98 ? C14 69D 700 A 1 HETATM 8 C C15 69D . . . D 4 31.169 186.461 4.029 1 165.05 ? C15 69D 700 A 1 HETATM 9 C C16 69D . . . D 4 29.9 184.651 3.097 1 155.38 ? C16 69D 700 A 1 HETATM 10 C C17 69D . . . D 4 34.093 182.705 2.593 1 169.37 ? C17 69D 700 A 1 HETATM 11 C C18 69D . . . D 4 34.091 181.861 1.825 1 160.34 ? C18 69D 700 A 1 HETATM 12 C C19 69D . . . D 4 30.263 186.571 5.069 1 196.27 ? C19 69D 700 A 1 HETATM 13 C C20 69D . . . D 4 28.991 184.761 4.14 1 160 ? C20 69D 700 A 1 HETATM 14 C C21 69D . . . D 4 29.172 185.721 5.126 1 185.96 ? C21 69D 700 A 1 HETATM 15 C C24 69D . . . D 4 34.943 180.605 2.004 1 138.3 ? C24 69D 700 A 1 HETATM 16 BR BR 69D . . . D 4 27.909 185.889 6.59 1 275.45 ? BR 69D 700 A 1 HETATM 17 O O02 69D . . . D 4 31.337 185.674 0.571 1 155.49 ? O02 69D 700 A 1 HETATM 18 N N03 69D . . . D 4 35.325 187.724 -0.36 1 151.8 ? N03 69D 700 A 1 HETATM 19 N N04 69D . . . D 4 35.574 179.673 2.135 1 138.43 ? N04 69D 700 A 1 HETATM 20 C C06 69D . . . D 4 33.107 186.494 2.106 1 127.7 ? C06 69D 700 A 1 HETATM 21 C C09 69D . . . D 4 33.267 187.272 0.806 1 146.1 ? C09 69D 700 A 1 HETATM 22 C C12 69D . . . D 4 34.554 188.09 0.813 1 163.18 ? C12 69D 700 A 1 HETATM 23 C C22 69D . . . D 4 36.519 188.546 -0.429 1 142.3 ? C22 69D 700 A 1 HETATM 24 C C23 69D . . . D 4 35.72 186.336 -0.222 1 149.95 ? C23 69D 700 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #