data_5I74 # _model_server_result.job_id a7ILj1E_alvsax2hPFfRQA _model_server_result.datetime_utc '2024-11-24 12:07:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5i74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":703}' # _entry.id 5I74 # _exptl.entry_id 5I74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5I74 _cell.length_a 129.59 _cell.length_b 164 _cell.length_c 140.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5I74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I 1 1 B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 129.59 0 70.085 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 200 1_555 A SG CYS 136 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 134 B CYS 153 1_555 C SG CYS 214 C CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 146 B CYS 165 1_555 B SG CYS 201 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 23 C CYS 43 1_555 C SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 134 C CYS 154 1_555 C SG CYS 194 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 135 A ASN 208 1_555 E C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 144 A ASN 217 1_555 I C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 207 n n C1 H11 D12 sing 208 n n C1 H12 D12 sing 209 n n C1 H13 D12 sing 210 n n C2 C3 D12 sing 211 n n C2 H21 D12 sing 212 n n C2 H22 D12 sing 213 n n C3 C4 D12 sing 214 n n C3 H31 D12 sing 215 n n C3 H32 D12 sing 216 n n C4 C5 D12 sing 217 n n C4 H41 D12 sing 218 n n C4 H42 D12 sing 219 n n C5 C6 D12 sing 220 n n C5 H51 D12 sing 221 n n C5 H52 D12 sing 222 n n C6 C7 D12 sing 223 n n C6 H61 D12 sing 224 n n C6 H62 D12 sing 225 n n C7 C8 D12 sing 226 n n C7 H71 D12 sing 227 n n C7 H72 D12 sing 228 n n C8 C9 D12 sing 229 n n C8 H81 D12 sing 230 n n C8 H82 D12 sing 231 n n C9 C10 D12 sing 232 n n C9 H91 D12 sing 233 n n C9 H92 D12 sing 234 n n C10 C11 D12 sing 235 n n C10 H101 D12 sing 236 n n C10 H102 D12 sing 237 n n C11 C12 D12 sing 238 n n C11 H111 D12 sing 239 n n C11 H112 D12 sing 240 n n C12 H121 D12 sing 241 n n C12 H122 D12 sing 242 n n C12 H123 D12 sing 243 n n # _atom_sites.entry_id 5I74 _atom_sites.fract_transf_matrix[1][1] 0.007717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 69D A 1 700 700 69D BCI . E 5 NAG A 1 701 701 NAG NAG . F 6 CLR A 1 702 702 CLR CLR . G 7 D12 A 1 703 703 D12 D12 . H 8 HEX A 1 704 704 HEX HEX . I 5 NAG A 1 705 705 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . G 7 45.029 179.978 -0.026 1 111.91 ? C1 D12 703 A 1 HETATM 2 C C2 D12 . . . G 7 43.594 179.497 -0.074 1 134.95 ? C2 D12 703 A 1 HETATM 3 C C3 D12 . . . G 7 42.633 180.486 0.549 1 120.91 ? C3 D12 703 A 1 HETATM 4 C C4 D12 . . . G 7 41.241 179.914 0.717 1 100.99 ? C4 D12 703 A 1 HETATM 5 C C5 D12 . . . G 7 41.214 178.713 1.637 1 105.34 ? C5 D12 703 A 1 HETATM 6 C C6 D12 . . . G 7 40 177.839 1.407 1 104 ? C6 D12 703 A 1 HETATM 7 C C7 D12 . . . G 7 40.254 176.388 1.759 1 126.98 ? C7 D12 703 A 1 HETATM 8 C C8 D12 . . . G 7 40.28 175.484 0.544 1 110.26 ? C8 D12 703 A 1 HETATM 9 C C9 D12 . . . G 7 41.513 175.693 -0.31 1 109.32 ? C9 D12 703 A 1 HETATM 10 C C10 D12 . . . G 7 41.651 174.65 -1.398 1 118.33 ? C10 D12 703 A 1 HETATM 11 C C11 D12 . . . G 7 42.87 174.873 -2.269 1 124.38 ? C11 D12 703 A 1 HETATM 12 C C12 D12 . . . G 7 44.15 174.987 -1.469 1 123.43 ? C12 D12 703 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #